Wall clock time and date at job start Mon Mar 30 2020 02:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47406 * 100.39271 * 3 2 1 5 5 C 1.36882 * 120.00085 * 95.58393 * 4 3 2 6 6 H 1.08004 * 119.99553 * 224.77109 * 5 4 3 7 7 C 1.39002 * 120.00071 * 44.77998 * 5 4 3 8 8 N 1.31401 * 120.00339 * 16.93306 * 7 5 4 9 9 Si 1.86806 * 119.99870 * 196.93920 * 7 5 4 10 10 H 1.48506 * 109.46976 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46966 * 119.99455 * 9 7 5 12 12 H 1.48494 * 109.47129 * 239.99728 * 9 7 5 13 13 C 1.34778 * 119.99704 * 275.58343 * 4 3 2 14 14 O 1.21746 * 120.00248 * 5.43705 * 13 4 3 15 15 C 1.46462 * 119.99971 * 185.43345 * 13 4 3 16 16 C 1.36763 * 125.46288 * 184.29943 * 15 13 4 17 17 C 1.37442 * 113.27890 * 179.86424 * 16 15 13 18 18 C 1.33844 * 115.10740 * 0.42999 * 17 16 15 19 19 C 1.50706 * 124.51728 * 179.75942 * 18 17 16 20 20 C 1.53005 * 109.46966 * 120.02142 * 19 18 17 21 21 C 1.52998 * 109.47331 * 240.02609 * 19 18 17 22 22 S 1.70618 * 110.97106 * 359.76236 * 18 17 16 23 23 H 4.40637 * 5.51411 * 180.02562 * 4 1 2 24 24 H 1.09001 * 109.47400 * 340.38484 * 3 2 1 25 25 H 1.09012 * 109.47161 * 220.38923 * 3 2 1 26 26 H 0.96994 * 120.00032 * 180.02562 * 8 7 5 27 27 H 1.07998 * 123.36317 * 0.02562 * 16 15 13 28 28 H 1.08004 * 122.44875 * 180.19068 * 17 16 15 29 29 H 1.09003 * 109.46935 * 0.02918 * 19 18 17 30 30 H 1.09000 * 109.47504 * 300.00493 * 20 19 18 31 31 H 1.09003 * 109.46660 * 60.00607 * 20 19 18 32 32 H 1.09001 * 109.46674 * 180.02562 * 20 19 18 33 33 H 1.09000 * 109.47231 * 59.99814 * 21 19 18 34 34 H 1.08996 * 109.47012 * 179.97438 * 21 19 18 35 35 H 1.08997 * 109.46755 * 299.99717 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.2500 -1.3585 5 6 3.4706 1.5201 -1.7425 6 1 3.1465 1.8981 -2.7010 7 6 4.2295 2.3232 -0.8992 8 7 4.8999 1.7840 0.0940 9 14 4.2960 4.1692 -1.1776 10 1 3.4603 4.5229 -2.3531 11 1 3.7804 4.8702 0.0258 12 1 5.7005 4.5818 -1.4270 13 6 3.2523 -0.7711 -2.2302 14 8 2.8610 -1.8823 -1.9228 15 6 3.8512 -0.5441 -3.5473 16 6 3.9504 -1.4744 -4.5448 17 6 4.5558 -0.9911 -5.6801 18 6 4.9481 0.2869 -5.6144 19 6 5.6365 1.0275 -6.7319 20 6 4.7896 2.2340 -7.1418 21 6 7.0098 1.5061 -6.2566 22 16 4.5650 0.9659 -4.0967 23 1 -1.0500 0.0002 0.0001 24 1 3.0098 -0.9672 0.3450 25 1 3.0090 0.7836 0.6660 26 1 5.4291 2.3445 0.6827 27 1 3.5868 -2.4870 -4.4509 28 1 4.7076 -1.5992 -6.5597 29 1 5.7594 0.3625 -7.5868 30 1 3.8113 1.8930 -7.4804 31 1 4.6668 2.8989 -6.2869 32 1 5.2874 2.7693 -7.9504 33 1 7.6131 0.6465 -5.9645 34 1 7.5078 2.0413 -7.0650 35 1 6.8869 2.1710 -5.4017 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491014446.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:17 Heat of formation + Delta-G solvation = 25.481773 kcal Electronic energy + Delta-G solvation = -19100.267180 eV Core-core repulsion = 16190.673588 eV Total energy + Delta-G solvation = -2909.593593 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.61276 -38.86886 -37.00739 -35.80209 -34.39624 -33.29058 -30.22389 -28.30995 -27.96813 -26.98423 -25.09732 -22.21958 -21.81056 -20.62787 -19.33946 -18.89358 -17.97761 -17.00586 -16.57056 -16.26824 -15.91577 -15.63504 -15.17559 -14.71149 -14.62441 -14.23876 -14.10818 -13.86110 -13.48569 -13.36055 -13.23401 -12.88231 -12.79191 -12.68711 -12.13648 -12.04782 -11.98490 -11.92456 -11.59100 -11.37238 -11.07557 -10.79875 -10.61884 -9.75208 -9.30118 -9.14283 -8.49811 -6.33683 -0.14101 0.94971 1.35128 1.44560 1.53587 1.59154 1.64756 1.76749 1.96994 2.25060 2.45813 2.95906 3.04873 3.69882 3.81671 4.09901 4.30178 4.31782 4.51574 4.64216 4.67482 4.80867 4.82606 4.91544 4.94457 5.00987 5.12637 5.16532 5.24403 5.28998 5.41150 5.42943 5.52949 5.71446 5.81372 6.20636 6.73524 6.91248 7.33470 7.80038 8.54565 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.015784 B = 0.008032 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.528832 B = 3485.390851 C = 4688.521946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.226 4.226 3 C 0.226 3.774 4 N -0.439 5.439 5 C -0.363 4.363 6 H 0.103 0.897 7 C 0.032 3.968 8 N -0.869 5.869 9 Si 0.962 3.038 10 H -0.248 1.248 11 H -0.270 1.270 12 H -0.263 1.263 13 C 0.527 3.473 14 O -0.630 6.630 15 C -0.279 4.279 16 C -0.091 4.091 17 C -0.165 4.165 18 C -0.252 4.252 19 C -0.021 4.021 20 C -0.146 4.146 21 C -0.147 4.147 22 S 0.296 5.704 23 H 0.257 0.743 24 H 0.063 0.937 25 H 0.110 0.890 26 H 0.283 0.717 27 H 0.132 0.868 28 H 0.152 0.848 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.051 0.949 34 H 0.084 0.916 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.663 5.165 -10.274 11.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.227 4.227 3 C 0.103 3.897 4 N -0.155 5.155 5 C -0.495 4.495 6 H 0.120 0.880 7 C -0.177 4.177 8 N -0.502 5.502 9 Si 0.782 3.218 10 H -0.171 1.171 11 H -0.195 1.195 12 H -0.187 1.187 13 C 0.319 3.681 14 O -0.519 6.519 15 C -0.399 4.399 16 C -0.125 4.125 17 C -0.194 4.194 18 C -0.371 4.371 19 C -0.041 4.041 20 C -0.204 4.204 21 C -0.205 4.205 22 S 0.570 5.430 23 H 0.273 0.727 24 H 0.081 0.919 25 H 0.127 0.873 26 H 0.094 0.906 27 H 0.150 0.850 28 H 0.170 0.830 29 H 0.114 0.886 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.882 6.117 -9.335 11.318 hybrid contribution -0.363 -1.259 -0.065 1.312 sum 1.519 4.858 -9.400 10.689 Atomic orbital electron populations 1.25663 0.96472 1.01078 0.98668 1.24323 0.95938 1.00533 1.01887 1.18125 0.83260 1.01533 0.86747 1.43348 1.55185 1.06845 1.10139 1.19626 1.34460 0.89375 1.05993 0.88028 1.26304 0.91843 1.04507 0.95071 1.69977 1.24668 1.38495 1.17088 0.85333 0.79567 0.76970 0.79895 1.17103 1.19531 1.18729 1.17912 0.80976 0.83843 0.85346 1.90604 1.56317 1.25227 1.79798 1.24526 1.14650 1.01455 0.99291 1.20708 0.99937 0.99488 0.92413 1.19859 1.04478 0.95765 0.99344 1.25833 1.05612 1.00456 1.05226 1.19762 0.94281 0.96496 0.93589 1.21930 0.99869 0.96683 1.01880 1.21934 0.95436 1.01217 1.01870 1.84059 1.49043 1.09070 1.00835 0.72662 0.91873 0.87252 0.90640 0.84976 0.83029 0.88583 0.92621 0.93269 0.89763 0.92938 0.89676 0.93396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -7.66 19.25 74.32 1.43 -6.23 16 2 C -0.23 -10.48 13.60 31.12 0.42 -10.05 16 3 C 0.23 11.46 5.31 84.57 0.45 11.91 16 4 N -0.44 -23.21 2.43 -650.18 -1.58 -24.80 16 5 C -0.36 -17.97 6.65 84.09 0.56 -17.41 16 6 H 0.10 4.89 5.73 -12.88 -0.07 4.82 16 7 C 0.03 1.49 4.95 84.94 0.42 1.91 16 8 N -0.87 -43.36 11.82 21.67 0.26 -43.11 16 9 Si 0.96 36.12 29.59 68.60 2.03 38.15 16 10 H -0.25 -8.84 7.11 99.48 0.71 -8.13 16 11 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 12 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 13 C 0.53 28.75 7.52 86.38 0.65 29.40 16 14 O -0.63 -37.22 16.56 -4.50 -0.07 -37.29 16 15 C -0.28 -13.14 6.29 24.07 0.15 -12.99 16 16 C -0.09 -3.75 10.02 21.74 0.22 -3.53 16 17 C -0.17 -5.54 9.95 21.08 0.21 -5.33 16 18 C -0.25 -8.12 4.95 24.69 0.12 -8.00 16 19 C -0.02 -0.51 3.25 -11.54 -0.04 -0.54 16 20 C -0.15 -3.10 9.08 71.98 0.65 -2.45 16 21 C -0.15 -3.25 9.08 71.98 0.65 -2.60 16 22 S 0.30 11.65 17.70 -56.49 -1.00 10.65 16 23 H 0.26 6.68 7.80 -4.42 -0.03 6.65 16 24 H 0.06 3.32 7.68 -2.39 -0.02 3.30 16 25 H 0.11 5.57 6.01 -2.38 -0.01 5.56 16 26 H 0.28 13.02 8.31 -92.71 -0.77 12.25 16 27 H 0.13 5.40 8.06 -2.91 -0.02 5.38 16 28 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 29 H 0.10 1.93 8.07 -2.39 -0.02 1.91 16 30 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 1.15 7.90 -2.39 -0.02 1.13 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.05 1.17 7.90 -2.39 -0.02 1.16 16 Total: -1.00 -63.80 317.42 6.56 -57.24 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 1.03 Total: 25.09 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: 5.90 Total: -25.93 kcal Atomic # 7 Polarization: -66.58 SS G_CDS: -1.33 Total: -67.90 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -0.07 Total: -37.29 kcal Atomic # 14 Polarization: 36.12 SS G_CDS: 2.03 Total: 38.15 kcal Atomic # 16 Polarization: 11.65 SS G_CDS: -1.00 Total: 10.65 kcal Total: -63.80 6.56 -57.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491014446.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.720 kcal (2) G-P(sol) polarization free energy of solvation -63.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds