Wall clock time and date at job start Mon Mar 30 2020 02:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47072 * 2 1 4 4 C 1.36928 * 119.99827 * 264.58879 * 3 2 1 5 5 H 1.08000 * 119.99813 * 145.16910 * 4 3 2 6 6 C 1.38959 * 119.99995 * 325.16102 * 4 3 2 7 7 N 1.31430 * 120.00316 * 338.94545 * 6 4 3 8 8 Si 1.86800 * 119.99749 * 158.94886 * 6 4 3 9 9 H 1.48497 * 109.47245 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47172 * 119.99998 * 8 6 4 11 11 H 1.48502 * 109.46874 * 239.99839 * 8 6 4 12 12 C 1.34775 * 119.99959 * 84.58463 * 3 2 1 13 13 O 1.21841 * 119.99777 * 179.97438 * 12 3 2 14 14 C 1.41187 * 119.99927 * 0.02562 * 12 3 2 15 15 C 1.35210 * 119.99817 * 179.97438 * 14 12 3 16 16 S 1.76199 * 119.99824 * 179.97438 * 15 14 12 17 17 C 1.76195 * 99.99895 * 185.16914 * 16 15 14 18 18 C 1.38957 * 120.07807 * 90.75797 * 17 16 15 19 19 C 1.38086 * 119.92112 * 179.97438 * 18 17 16 20 20 C 1.38299 * 120.08027 * 359.97278 * 19 18 17 21 21 C 1.38305 * 120.15469 * 0.30026 * 20 19 18 22 22 C 1.38093 * 120.07469 * 359.44663 * 21 20 19 23 23 H 1.08991 * 109.47308 * 59.99907 * 1 2 3 24 24 H 1.09003 * 109.46894 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46983 * 299.99727 * 1 2 3 26 26 H 1.09004 * 109.46582 * 239.99990 * 2 1 3 27 27 H 1.09000 * 109.47177 * 120.00044 * 2 1 3 28 28 H 0.96994 * 120.00001 * 179.97438 * 7 6 4 29 29 H 1.07995 * 120.00006 * 359.97438 * 14 12 3 30 30 H 1.07995 * 120.00176 * 359.97438 * 15 14 12 31 31 H 1.08003 * 120.03423 * 359.95303 * 18 17 16 32 32 H 1.08005 * 119.95899 * 179.97438 * 19 18 17 33 33 H 1.07992 * 119.92586 * 180.02562 * 20 19 18 34 34 H 1.07996 * 119.96573 * 179.72108 * 21 20 19 35 35 H 1.07998 * 120.03784 * 180.25164 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3520 1.9894 -1.1806 5 1 2.1696 3.0454 -1.3143 6 6 2.9253 1.2478 -2.2064 7 7 3.5227 0.1081 -1.9389 8 14 2.8471 1.8709 -3.9657 9 1 2.1249 3.1680 -3.9997 10 1 4.2252 2.0572 -4.4866 11 1 2.1284 0.8825 -4.8093 12 6 2.1391 2.0532 1.1620 13 8 2.5457 3.2018 1.1620 14 6 1.7955 1.4259 2.3793 15 6 1.9172 2.1000 3.5450 16 16 1.4877 1.3174 5.0641 17 6 1.6892 2.6713 6.1735 18 6 0.6142 3.5048 6.4575 19 6 0.7755 4.5647 7.3278 20 6 2.0050 4.7968 7.9170 21 6 3.0786 3.9726 7.6323 22 6 2.9231 2.9077 6.7670 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.9226 -0.4096 -2.6550 29 1 1.4356 0.4078 2.3793 30 1 2.2776 3.1180 3.5451 31 1 -0.3462 3.3241 5.9977 32 1 -0.0594 5.2132 7.5486 33 1 2.1283 5.6262 8.5976 34 1 4.0384 4.1594 8.0907 35 1 3.7607 2.2621 6.5482 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491290635.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:56 Heat of formation + Delta-G solvation = 18.267737 kcal Electronic energy + Delta-G solvation = -18101.216721 eV Core-core repulsion = 15191.310304 eV Total energy + Delta-G solvation = -2909.906417 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.06652 -38.71424 -35.08449 -32.46369 -31.62138 -31.15340 -31.13744 -29.45096 -25.65313 -23.30236 -22.75407 -22.65884 -21.80426 -18.60233 -17.52809 -17.13345 -16.54273 -15.96798 -15.16543 -15.07268 -14.62918 -14.33551 -13.79069 -13.63202 -13.52343 -13.20712 -12.86353 -12.72237 -12.15901 -11.84227 -11.72011 -11.43402 -11.37908 -11.10694 -10.91411 -10.49683 -10.39150 -10.31525 -10.12245 -10.00757 -9.14511 -9.04177 -8.97858 -8.42084 -7.54486 -7.28078 -6.37797 -3.94462 0.80705 1.20079 1.77352 1.86573 2.62330 3.16170 3.24753 3.31806 3.57846 4.13888 4.45171 4.68860 4.77077 4.88261 4.99852 5.13401 5.23779 5.29896 5.53894 5.58420 5.80034 5.92951 6.09227 6.14735 6.17005 6.24799 6.25610 6.34069 6.53977 6.56560 6.68929 6.73826 6.90377 7.27086 7.55410 8.23989 8.51123 9.18055 9.38410 10.02902 10.64634 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.032607 B = 0.003632 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.498546 B = 7706.823615 C = 8034.213677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.092 3.908 3 N -0.425 5.425 4 C -0.300 4.300 5 H 0.095 0.905 6 C 0.034 3.966 7 N -0.863 5.863 8 Si 0.920 3.080 9 H -0.266 1.266 10 H -0.281 1.281 11 H -0.279 1.279 12 C 0.479 3.521 13 O -0.595 6.595 14 C -0.148 4.148 15 C -0.134 4.134 16 S -0.029 6.029 17 C -0.135 4.135 18 C -0.067 4.067 19 C -0.131 4.131 20 C -0.096 4.096 21 C -0.130 4.130 22 C -0.068 4.068 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.044 0.956 26 H 0.114 0.886 27 H 0.050 0.950 28 H 0.269 0.731 29 H 0.121 0.879 30 H 0.139 0.861 31 H 0.132 0.868 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.019 1.380 15.709 16.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.032 4.032 3 N -0.142 5.142 4 C -0.428 4.428 5 H 0.113 0.887 6 C -0.170 4.170 7 N -0.501 5.501 8 Si 0.746 3.254 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.205 1.205 12 C 0.270 3.730 13 O -0.482 6.482 14 C -0.180 4.180 15 C -0.268 4.268 16 S 0.217 5.783 17 C -0.246 4.246 18 C -0.087 4.087 19 C -0.150 4.150 20 C -0.114 4.114 21 C -0.150 4.150 22 C -0.088 4.088 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.132 0.868 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.138 0.862 30 H 0.157 0.843 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.068 0.618 15.858 16.660 hybrid contribution 0.447 1.376 -1.115 1.826 sum -4.621 1.994 14.744 15.579 Atomic orbital electron populations 1.22228 0.97938 1.00447 1.01685 1.21673 0.91911 0.85394 1.04232 1.43565 1.53721 1.11717 1.05185 1.19576 1.38106 0.96001 0.89165 0.88730 1.25414 0.94434 0.96418 1.00764 1.69925 1.31974 1.15020 1.33201 0.85970 0.78202 0.79203 0.81999 1.19061 1.20658 1.20485 1.16780 0.84308 0.88047 0.83885 1.90658 1.51789 1.18582 1.87180 1.21904 1.02422 1.00413 0.93213 1.25598 1.03494 1.03019 0.94705 1.84240 1.84821 1.12301 0.96893 1.21931 0.96847 1.01853 1.03999 1.21618 0.98292 0.93068 0.95769 1.21216 0.97893 0.98027 0.97889 1.21340 0.93003 0.98677 0.98421 1.21224 0.99218 0.95535 0.99008 1.21639 0.96243 0.96506 0.94422 0.92434 0.92993 0.93686 0.86820 0.93112 0.92071 0.86162 0.84324 0.84960 0.85466 0.85694 0.85451 0.84936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 10.07 37.16 0.37 -2.67 16 2 C 0.09 2.04 5.28 -4.04 -0.02 2.02 16 3 N -0.42 -11.11 2.55 -118.17 -0.30 -11.41 16 4 C -0.30 -8.44 8.96 -15.01 -0.13 -8.57 16 5 H 0.10 2.79 7.71 -52.49 -0.40 2.38 16 6 C 0.03 0.91 4.94 -17.46 -0.09 0.82 16 7 N -0.86 -23.20 11.32 55.50 0.63 -22.57 16 8 Si 0.92 20.50 29.60 -169.99 -5.03 15.46 16 9 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 12 C 0.48 12.44 7.35 -15.14 -0.11 12.33 16 13 O -0.59 -17.49 15.93 5.06 0.08 -17.41 16 14 C -0.15 -3.09 8.29 -39.54 -0.33 -3.42 16 15 C -0.13 -2.53 9.49 29.65 0.28 -2.24 16 16 S -0.03 -0.42 22.02 -107.50 -2.37 -2.79 16 17 C -0.14 -1.82 5.45 -39.05 -0.21 -2.03 16 18 C -0.07 -0.80 9.79 -39.37 -0.39 -1.19 16 19 C -0.13 -1.31 10.04 -39.61 -0.40 -1.70 16 20 C -0.10 -0.90 10.04 -39.53 -0.40 -1.30 16 21 C -0.13 -1.32 10.04 -39.61 -0.40 -1.72 16 22 C -0.07 -0.82 9.79 -39.37 -0.39 -1.21 16 23 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.04 0.80 7.52 -51.93 -0.39 0.41 16 26 H 0.11 2.75 5.37 -51.93 -0.28 2.47 16 27 H 0.05 1.04 6.40 -51.93 -0.33 0.71 16 28 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 29 H 0.12 2.26 5.96 -52.49 -0.31 1.94 16 30 H 0.14 2.84 7.41 -52.49 -0.39 2.45 16 31 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 32 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 33 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 317.52 15.07 4.78 4.78 Total: -1.00 -31.77 317.52 -8.61 -40.38 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -4.20 Total: 4.43 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -2.20 Total: -10.88 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.33 Total: -33.98 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.08 Total: -17.41 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.46 kcal Atomic # 16 Polarization: -0.42 SS G_CDS: -2.37 Total: -2.79 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.77 -8.61 -40.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491290635.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.646 kcal (2) G-P(sol) polarization free energy of solvation -31.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds