Wall clock time and date at job start Mon Mar 30 2020 02:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47072 * 2 1 4 4 C 1.36928 * 119.99827 * 264.58879 * 3 2 1 5 5 H 1.08000 * 119.99813 * 145.16910 * 4 3 2 6 6 C 1.38959 * 119.99995 * 325.16102 * 4 3 2 7 7 N 1.31430 * 120.00316 * 338.94545 * 6 4 3 8 8 Si 1.86800 * 119.99749 * 158.94886 * 6 4 3 9 9 H 1.48497 * 109.47245 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47172 * 119.99998 * 8 6 4 11 11 H 1.48502 * 109.46874 * 239.99839 * 8 6 4 12 12 C 1.34775 * 119.99959 * 84.58463 * 3 2 1 13 13 O 1.21841 * 119.99777 * 179.97438 * 12 3 2 14 14 C 1.41187 * 119.99927 * 0.02562 * 12 3 2 15 15 C 1.35210 * 119.99817 * 179.97438 * 14 12 3 16 16 S 1.76199 * 119.99824 * 179.97438 * 15 14 12 17 17 C 1.76195 * 99.99895 * 185.16914 * 16 15 14 18 18 C 1.38957 * 120.07807 * 90.75797 * 17 16 15 19 19 C 1.38086 * 119.92112 * 179.97438 * 18 17 16 20 20 C 1.38299 * 120.08027 * 359.97278 * 19 18 17 21 21 C 1.38305 * 120.15469 * 0.30026 * 20 19 18 22 22 C 1.38093 * 120.07469 * 359.44663 * 21 20 19 23 23 H 1.08991 * 109.47308 * 59.99907 * 1 2 3 24 24 H 1.09003 * 109.46894 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46983 * 299.99727 * 1 2 3 26 26 H 1.09004 * 109.46582 * 239.99990 * 2 1 3 27 27 H 1.09000 * 109.47177 * 120.00044 * 2 1 3 28 28 H 0.96994 * 120.00001 * 179.97438 * 7 6 4 29 29 H 1.07995 * 120.00006 * 359.97438 * 14 12 3 30 30 H 1.07995 * 120.00176 * 359.97438 * 15 14 12 31 31 H 1.08003 * 120.03423 * 359.95303 * 18 17 16 32 32 H 1.08005 * 119.95899 * 179.97438 * 19 18 17 33 33 H 1.07992 * 119.92586 * 180.02562 * 20 19 18 34 34 H 1.07996 * 119.96573 * 179.72108 * 21 20 19 35 35 H 1.07998 * 120.03784 * 180.25164 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3520 1.9894 -1.1806 5 1 2.1696 3.0454 -1.3143 6 6 2.9253 1.2478 -2.2064 7 7 3.5227 0.1081 -1.9389 8 14 2.8471 1.8709 -3.9657 9 1 2.1249 3.1680 -3.9997 10 1 4.2252 2.0572 -4.4866 11 1 2.1284 0.8825 -4.8093 12 6 2.1391 2.0532 1.1620 13 8 2.5457 3.2018 1.1620 14 6 1.7955 1.4259 2.3793 15 6 1.9172 2.1000 3.5450 16 16 1.4877 1.3174 5.0641 17 6 1.6892 2.6713 6.1735 18 6 0.6142 3.5048 6.4575 19 6 0.7755 4.5647 7.3278 20 6 2.0050 4.7968 7.9170 21 6 3.0786 3.9726 7.6323 22 6 2.9231 2.9077 6.7670 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.9226 -0.4096 -2.6550 29 1 1.4356 0.4078 2.3793 30 1 2.2776 3.1180 3.5451 31 1 -0.3462 3.3241 5.9977 32 1 -0.0594 5.2132 7.5486 33 1 2.1283 5.6262 8.5976 34 1 4.0384 4.1594 8.0907 35 1 3.7607 2.2621 6.5482 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491290635.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:56 Heat of formation + Delta-G solvation = 0.646083 kcal Electronic energy + Delta-G solvation = -18101.980853 eV Core-core repulsion = 15191.310304 eV Total energy + Delta-G solvation = -2910.670549 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.64860 -39.89629 -37.04818 -34.33832 -33.42008 -32.00434 -31.97988 -31.21006 -27.60414 -24.84315 -23.92178 -23.58767 -23.38206 -20.24033 -18.97812 -18.64713 -18.35508 -17.05316 -16.96459 -16.16443 -16.03304 -15.80306 -15.56118 -14.95452 -14.64823 -14.53226 -14.42838 -13.86008 -13.63609 -13.58609 -13.48089 -12.87434 -12.70760 -12.51584 -12.33016 -12.20003 -12.06881 -11.85365 -11.67118 -11.46401 -10.93812 -10.50361 -9.98118 -9.95511 -9.52705 -8.64583 -8.37672 -6.05899 -0.17819 0.15389 0.36954 0.72190 1.34726 1.39187 1.41261 1.55848 2.28477 2.50587 2.71970 3.08865 3.20538 3.88216 3.98649 4.01882 4.16850 4.27254 4.45534 4.47187 4.47433 4.61648 4.72481 4.79798 4.92199 5.00961 5.01676 5.15511 5.28426 5.29211 5.35563 5.42709 5.45569 5.56458 5.89975 6.17865 6.52102 7.14138 7.40958 8.03864 8.63073 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.032607 B = 0.003632 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.498546 B = 7706.823615 C = 8034.213677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.091 3.909 3 N -0.438 5.438 4 C -0.342 4.342 5 H 0.065 0.935 6 C 0.004 3.996 7 N -0.883 5.883 8 Si 0.987 3.013 9 H -0.272 1.272 10 H -0.276 1.276 11 H -0.260 1.260 12 C 0.469 3.531 13 O -0.648 6.648 14 C -0.178 4.178 15 C -0.109 4.109 16 S 0.017 5.983 17 C -0.171 4.171 18 C -0.080 4.080 19 C -0.133 4.133 20 C -0.089 4.089 21 C -0.133 4.133 22 C -0.083 4.083 23 H 0.043 0.957 24 H 0.088 0.912 25 H 0.051 0.949 26 H 0.094 0.906 27 H 0.065 0.935 28 H 0.277 0.723 29 H 0.144 0.856 30 H 0.116 0.884 31 H 0.137 0.863 32 H 0.155 0.845 33 H 0.159 0.841 34 H 0.153 0.847 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.741 1.190 17.454 18.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.032 4.032 3 N -0.154 5.154 4 C -0.471 4.471 5 H 0.083 0.917 6 C -0.199 4.199 7 N -0.521 5.521 8 Si 0.809 3.191 9 H -0.196 1.196 10 H -0.202 1.202 11 H -0.184 1.184 12 C 0.261 3.739 13 O -0.539 6.539 14 C -0.210 4.210 15 C -0.244 4.244 16 S 0.265 5.735 17 C -0.282 4.282 18 C -0.100 4.100 19 C -0.152 4.152 20 C -0.107 4.107 21 C -0.153 4.153 22 C -0.103 4.103 23 H 0.062 0.938 24 H 0.107 0.893 25 H 0.070 0.930 26 H 0.112 0.888 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.161 0.839 30 H 0.134 0.866 31 H 0.155 0.845 32 H 0.173 0.827 33 H 0.177 0.823 34 H 0.171 0.829 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.808 0.372 17.625 18.561 hybrid contribution 0.706 1.535 -1.357 2.167 sum -5.102 1.907 16.268 17.155 Atomic orbital electron populations 1.22115 0.95002 1.02685 1.01333 1.21786 0.94318 0.83269 1.03855 1.43800 1.53840 1.12996 1.04751 1.19500 1.40913 0.95424 0.91215 0.91720 1.26174 0.93188 0.96453 1.04101 1.69984 1.31736 1.15681 1.34657 0.85002 0.78297 0.78755 0.77013 1.19607 1.20186 1.18400 1.17517 0.83393 0.87563 0.85446 1.90595 1.54326 1.20855 1.88159 1.21607 1.06238 1.01579 0.91617 1.25848 0.99542 1.01941 0.97035 1.84070 1.83207 1.12301 0.93963 1.22079 0.98327 1.02747 1.05093 1.21812 0.98144 0.93599 0.96482 1.21592 0.99246 0.97465 0.96915 1.21812 0.92250 0.98843 0.97766 1.21584 1.00788 0.94667 0.98259 1.21812 0.95842 0.97541 0.95128 0.93816 0.89334 0.92992 0.88787 0.91667 0.91307 0.83860 0.86566 0.84514 0.82748 0.82339 0.82909 0.84807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.55 10.07 71.98 0.72 -4.83 16 2 C 0.09 4.07 5.28 86.38 0.46 4.53 16 3 N -0.44 -23.81 2.55 -645.95 -1.65 -25.45 16 4 C -0.34 -20.16 8.96 84.07 0.75 -19.41 16 5 H 0.06 4.09 7.71 -2.91 -0.02 4.07 16 6 C 0.00 0.21 4.94 84.93 0.42 0.63 16 7 N -0.88 -48.06 11.32 21.67 0.25 -47.81 16 8 Si 0.99 42.66 29.60 68.60 2.03 44.69 16 9 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 10 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 11 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 12 C 0.47 25.47 7.35 84.97 0.62 26.09 16 13 O -0.65 -40.46 15.93 -4.80 -0.08 -40.53 16 14 C -0.18 -7.59 8.29 22.30 0.18 -7.41 16 15 C -0.11 -4.17 9.49 67.12 0.64 -3.53 16 16 S 0.02 0.48 22.02 -56.49 -1.24 -0.77 16 17 C -0.17 -4.41 5.45 22.61 0.12 -4.28 16 18 C -0.08 -1.78 9.79 22.41 0.22 -1.57 16 19 C -0.13 -2.27 10.04 22.25 0.22 -2.05 16 20 C -0.09 -1.36 10.04 22.30 0.22 -1.13 16 21 C -0.13 -2.35 10.04 22.25 0.22 -2.12 16 22 C -0.08 -1.90 9.79 22.41 0.22 -1.68 16 23 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 25 H 0.05 1.80 7.52 -2.39 -0.02 1.78 16 26 H 0.09 4.61 5.37 -2.38 -0.01 4.60 16 27 H 0.07 2.67 6.40 -2.39 -0.02 2.66 16 28 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 29 H 0.14 5.32 5.96 -2.91 -0.02 5.30 16 30 H 0.12 4.95 7.41 -2.91 -0.02 4.93 16 31 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 32 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.16 1.36 8.06 -2.91 -0.02 1.33 16 34 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 35 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -72.73 317.52 5.43 -67.30 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 1.09 Total: 19.34 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: 5.03 Total: -16.76 kcal Atomic # 7 Polarization: -71.86 SS G_CDS: -1.40 Total: -73.26 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -0.08 Total: -40.53 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: 0.48 SS G_CDS: -1.24 Total: -0.77 kcal Total: -72.73 5.43 -67.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491290635.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.945 kcal (2) G-P(sol) polarization free energy of solvation -72.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds