Wall clock time and date at job start Mon Mar 30 2020 01:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00005 * 2 1 4 4 H 1.48498 * 109.46955 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46830 * 299.99823 * 3 2 1 6 6 H 1.48493 * 109.47016 * 59.99706 * 3 2 1 7 7 C 1.37877 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99978 * 169.58055 * 7 2 1 9 9 C 1.50701 * 119.99984 * 349.58528 * 7 2 1 10 10 C 1.52997 * 115.55027 * 324.23010 * 9 7 2 11 11 N 1.46503 * 109.47199 * 306.82224 * 10 9 7 12 12 C 1.34778 * 120.00216 * 174.97411 * 11 10 9 13 13 O 1.21756 * 119.99576 * 5.03253 * 12 11 10 14 14 C 1.41654 * 119.99994 * 185.02967 * 12 11 10 15 15 C 1.35241 * 120.00092 * 174.61502 * 14 12 11 16 16 C 1.46693 * 120.00206 * 180.02562 * 15 14 12 17 17 C 1.44528 * 123.50204 * 180.02562 * 16 15 14 18 18 C 1.32738 * 113.09192 * 179.97438 * 17 16 15 19 19 S 1.75498 * 110.63843 * 0.02562 * 18 17 16 20 20 C 1.36300 * 123.49661 * 359.70465 * 16 15 14 21 21 C 1.53006 * 117.49768 * 109.89631 * 9 7 2 22 22 C 1.53000 * 117.49948 * 178.55708 * 9 7 2 23 23 H 0.97000 * 119.99830 * 5.03862 * 1 2 3 24 24 H 1.08997 * 109.47445 * 186.81742 * 10 9 7 25 25 H 1.09008 * 109.47365 * 66.81844 * 10 9 7 26 26 H 0.97006 * 119.99716 * 354.96938 * 11 10 9 27 27 H 1.08004 * 119.99891 * 354.61970 * 14 12 11 28 28 H 1.08004 * 120.00017 * 0.02562 * 15 14 12 29 29 H 1.08004 * 123.45124 * 359.96680 * 17 16 15 30 30 H 1.07999 * 124.68152 * 179.97438 * 18 17 16 31 31 H 1.07996 * 124.60188 * 0.02562 * 20 16 15 32 32 H 1.09002 * 117.49353 * 215.00262 * 21 9 7 33 33 H 1.08996 * 117.50036 * 0.02829 * 21 9 7 34 34 H 1.09001 * 117.49896 * 359.97438 * 22 9 7 35 35 H 1.09002 * 117.49524 * 144.97538 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0712 -1.2018 -0.1686 9 6 1.2697 -2.4883 0.2370 10 6 0.1123 -2.4171 1.2351 11 7 0.5865 -1.8323 2.4919 12 6 -0.2853 -1.5767 3.4875 13 8 -1.4498 -1.9153 3.3787 14 6 0.1533 -0.9143 4.6603 15 6 -0.7406 -0.5606 5.6115 16 6 -0.2866 0.1259 6.8258 17 6 -1.1748 0.5371 7.8892 18 6 -0.5447 1.1400 8.8899 19 16 1.1785 1.2317 8.5702 20 6 1.0177 0.4366 7.0712 21 6 1.1222 -3.4438 -0.9489 22 6 2.0852 -3.7821 0.1920 23 1 -0.4850 0.8368 -0.0738 24 1 -0.2683 -3.4212 1.4224 25 1 -0.6846 -1.7973 0.8239 26 1 1.5279 -1.6291 2.6075 27 1 1.2015 -0.6917 4.7948 28 1 -1.7888 -0.7835 5.4772 29 1 -2.2418 0.3709 7.8714 30 1 -1.0261 1.5222 9.7779 31 1 1.8374 0.2119 6.4050 32 1 0.2005 -4.0217 -1.0178 33 1 1.5570 -3.1365 -1.8999 34 1 3.1531 -3.6972 -0.0092 35 1 1.7973 -4.5824 0.8737 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493379230.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:39 Heat of formation + Delta-G solvation = 34.284633 kcal Electronic energy + Delta-G solvation = -18398.373462 eV Core-core repulsion = 15489.161590 eV Total energy + Delta-G solvation = -2909.211872 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.10178 -37.78732 -36.65597 -33.00664 -32.81722 -32.17009 -29.08677 -26.59151 -25.55955 -24.44928 -21.73797 -21.18668 -19.45092 -19.22798 -18.45083 -18.05031 -16.57843 -16.03647 -15.33499 -14.82988 -14.59019 -14.18910 -13.77202 -13.47873 -13.27794 -13.08684 -12.72549 -12.59307 -12.22246 -11.73858 -11.63428 -11.55266 -11.07335 -10.91672 -10.76537 -10.51857 -10.28049 -10.02025 -9.65972 -9.17614 -9.04951 -9.02017 -8.81156 -8.25044 -8.02292 -7.71539 -6.07520 -4.17712 0.62901 1.50776 1.54615 1.89347 2.91435 3.19440 3.30165 3.31974 4.08158 4.27246 4.33265 4.68766 4.94493 5.05900 5.16212 5.30538 5.49101 5.54728 5.69378 5.87820 5.92466 6.02552 6.26011 6.31036 6.53911 6.57735 6.61672 6.68284 6.71977 6.91831 7.10314 7.27869 7.56428 7.62160 7.92222 8.31791 8.56909 8.82227 9.17345 9.43701 10.89919 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.019295 B = 0.004375 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.779484 B = 6398.299982 C = 7127.415742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.077 3.923 3 Si 0.888 3.112 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.500 4.500 8 H 0.062 0.938 9 C 0.038 3.962 10 C 0.161 3.839 11 N -0.682 5.682 12 C 0.536 3.464 13 O -0.569 6.569 14 C -0.189 4.189 15 C -0.020 4.020 16 C -0.087 4.087 17 C -0.112 4.112 18 C -0.234 4.234 19 S 0.154 5.846 20 C -0.234 4.234 21 C -0.196 4.196 22 C -0.213 4.213 23 H 0.263 0.737 24 H 0.024 0.976 25 H 0.111 0.889 26 H 0.398 0.602 27 H 0.120 0.880 28 H 0.137 0.863 29 H 0.149 0.851 30 H 0.164 0.836 31 H 0.169 0.831 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.559 2.080 15.709 15.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.128 4.128 3 Si 0.715 3.285 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.537 4.537 8 H 0.080 0.920 9 C 0.037 3.963 10 C 0.038 3.962 11 N -0.328 5.328 12 C 0.325 3.675 13 O -0.453 6.453 14 C -0.212 4.212 15 C -0.042 4.042 16 C -0.101 4.101 17 C -0.141 4.141 18 C -0.369 4.369 19 S 0.420 5.580 20 C -0.371 4.371 21 C -0.234 4.234 22 C -0.250 4.250 23 H 0.073 0.927 24 H 0.042 0.958 25 H 0.128 0.872 26 H 0.232 0.768 27 H 0.137 0.863 28 H 0.155 0.845 29 H 0.166 0.834 30 H 0.182 0.818 31 H 0.186 0.814 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.827 2.589 16.468 16.770 hybrid contribution -0.179 0.397 -1.038 1.126 sum 1.648 2.986 15.430 15.802 Atomic orbital electron populations 1.69858 1.05908 1.26868 1.47469 1.24962 0.94707 0.98983 0.94103 0.86597 0.80218 0.83774 0.77880 1.19645 1.20934 1.20771 1.20498 0.93944 0.88882 1.50423 0.92012 1.19201 0.94207 0.89010 0.93855 1.21002 0.98267 0.95214 0.81719 1.45718 1.10846 1.61385 1.14877 1.16910 0.86085 0.80485 0.84059 1.90749 1.18013 1.54584 1.81912 1.22147 1.00328 1.02972 0.95718 1.21867 1.00230 0.92447 0.89648 1.19473 0.91644 1.02732 0.96241 1.21368 1.00712 0.99408 0.92631 1.25435 0.97546 1.09301 1.04594 1.82944 1.05930 1.55847 1.13302 1.25635 1.01034 1.07252 1.03178 1.22911 0.99265 1.06753 0.94504 1.22968 0.96771 1.01964 1.03297 0.92658 0.95793 0.87165 0.76772 0.86251 0.84547 0.83371 0.81820 0.81361 0.91517 0.90219 0.90638 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.46 10.79 55.43 0.60 -22.86 16 2 C 0.08 1.99 5.14 -17.82 -0.09 1.90 16 3 Si 0.89 20.10 29.55 -169.99 -5.02 15.08 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.50 -12.73 8.37 -34.44 -0.29 -13.02 16 8 H 0.06 1.58 7.84 -52.49 -0.41 1.17 16 9 C 0.04 0.90 1.96 -155.66 -0.30 0.59 16 10 C 0.16 3.85 4.76 -4.04 -0.02 3.83 16 11 N -0.68 -14.75 5.21 -63.21 -0.33 -15.08 16 12 C 0.54 11.37 7.55 -14.96 -0.11 11.25 16 13 O -0.57 -13.90 16.13 5.14 0.08 -13.82 16 14 C -0.19 -3.20 9.25 -39.35 -0.36 -3.56 16 15 C -0.02 -0.30 9.57 -37.24 -0.36 -0.66 16 16 C -0.09 -1.14 5.97 -104.70 -0.62 -1.76 16 17 C -0.11 -1.22 10.38 -38.98 -0.40 -1.62 16 18 C -0.23 -2.19 11.11 28.85 0.32 -1.87 16 19 S 0.15 1.46 23.02 -107.50 -2.47 -1.01 16 20 C -0.23 -2.76 10.26 30.03 0.31 -2.45 16 21 C -0.20 -4.34 9.96 -26.69 -0.27 -4.60 16 22 C -0.21 -4.44 9.92 -26.69 -0.26 -4.70 16 23 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 24 H 0.02 0.56 8.08 -51.93 -0.42 0.14 16 25 H 0.11 3.02 6.08 -51.92 -0.32 2.70 16 26 H 0.40 8.02 8.03 -40.82 -0.33 7.69 16 27 H 0.12 1.71 6.52 -52.48 -0.34 1.37 16 28 H 0.14 2.16 7.46 -52.48 -0.39 1.77 16 29 H 0.15 1.35 8.06 -52.48 -0.42 0.93 16 30 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.17 1.82 6.81 -52.49 -0.36 1.46 16 32 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 34 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 318.04 15.07 4.79 4.79 Total: -1.00 -29.40 318.04 -9.06 -38.46 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -4.24 Total: 11.09 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -2.47 Total: -16.66 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.27 Total: -37.94 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.08 Total: -13.82 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -2.47 Total: -1.01 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.40 -9.06 -38.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493379230.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.748 kcal (2) G-P(sol) polarization free energy of solvation -29.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds