Wall clock time and date at job start Mon Mar 30 2020 02:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.37514 * 2 1 4 4 C 1.52174 * 109.28212 * 240.28508 * 2 1 3 5 5 C 1.50436 * 115.49976 * 169.36215 * 4 2 1 6 6 N 1.47093 * 111.46404 * 68.03884 * 5 4 2 7 7 C 1.34770 * 120.84392 * 89.57603 * 6 5 4 8 8 O 1.21831 * 120.00109 * 359.97438 * 7 6 5 9 9 C 1.41496 * 120.00371 * 179.97438 * 7 6 5 10 10 H 1.07993 * 119.99550 * 354.07520 * 9 7 6 11 11 C 1.40141 * 119.99702 * 174.07922 * 9 7 6 12 12 N 1.30619 * 120.00735 * 6.35721 * 11 9 7 13 13 Si 1.86808 * 119.99380 * 186.35405 * 11 9 7 14 14 H 1.48504 * 109.47039 * 94.98797 * 13 11 9 15 15 H 1.48500 * 109.46843 * 214.98374 * 13 11 9 16 16 H 1.48494 * 109.47512 * 334.98594 * 13 11 9 17 17 C 1.39387 * 118.31708 * 269.55518 * 6 5 4 18 18 C 1.39281 * 119.69908 * 254.08898 * 17 6 5 19 19 C 1.38070 * 119.64219 * 175.73446 * 18 17 6 20 20 C 1.38582 * 120.73094 * 359.96187 * 19 18 17 21 21 C 1.38379 * 120.12483 * 0.89911 * 20 19 18 22 22 C 1.38441 * 119.20331 * 0.02562 * 21 20 19 23 23 S 1.77622 * 120.42623 * 176.48838 * 22 21 20 24 24 H 1.09000 * 109.47241 * 300.23920 * 1 2 3 25 25 H 1.09004 * 109.46987 * 60.23652 * 1 2 3 26 26 H 1.08999 * 109.47257 * 180.24183 * 1 2 3 27 27 H 1.09005 * 108.28049 * 290.92143 * 4 2 1 28 28 H 1.08999 * 108.27915 * 47.98584 * 4 2 1 29 29 H 1.09000 * 109.08212 * 188.55135 * 5 4 2 30 30 H 1.08998 * 109.07667 * 307.59322 * 5 4 2 31 31 H 0.96997 * 120.00553 * 179.97438 * 12 11 9 32 32 H 1.07994 * 120.17852 * 355.70299 * 18 17 6 33 33 H 1.08000 * 119.62981 * 179.97438 * 19 18 17 34 34 H 1.07998 * 119.93977 * 180.92371 * 20 19 18 35 35 H 1.07998 * 120.39870 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8916 1.0282 0.0000 4 6 2.0325 -0.7120 -1.2475 5 6 3.5060 -0.5789 -1.5199 6 7 4.3063 -1.2896 -0.5109 7 6 4.6417 -2.5837 -0.6812 8 8 4.2811 -3.1801 -1.6806 9 6 5.4126 -3.2500 0.3006 10 1 5.8130 -2.6986 1.1384 11 6 5.6566 -4.6252 0.1856 12 7 5.2801 -5.2679 -0.8874 13 14 6.5204 -5.5391 1.5670 14 1 5.5079 -6.1532 2.4631 15 1 7.3834 -6.6026 0.9930 16 1 7.3563 -4.5882 2.3428 17 6 4.7093 -0.5906 0.6256 18 6 6.0375 -0.1920 0.7558 19 6 6.4170 0.5761 1.8385 20 6 5.4909 0.9556 2.7970 21 6 4.1722 0.5505 2.6873 22 6 3.7943 -0.2356 1.6122 23 16 2.1327 -0.8510 1.4880 24 1 -0.3634 0.5175 0.8878 25 1 -0.3633 0.5102 -0.8921 26 1 -0.3634 -1.0276 0.0043 27 1 1.7965 -1.7721 -1.1546 28 1 1.4915 -0.3175 -2.1076 29 1 3.7251 -0.9923 -2.5044 30 1 3.7764 0.4770 -1.5088 31 1 5.4493 -6.2197 -0.9671 32 1 6.7667 -0.4826 0.0140 33 1 7.4471 0.8847 1.9394 34 1 5.7986 1.5690 3.6308 35 1 3.4469 0.8433 3.4319 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547467648.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:09 Heat of formation + Delta-G solvation = -6.244612 kcal Electronic energy + Delta-G solvation = -19788.071130 eV Core-core repulsion = 16877.101778 eV Total energy + Delta-G solvation = -2910.969352 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.42530 -37.32220 -35.42093 -33.50941 -32.50090 -30.61001 -29.90479 -28.15743 -26.39923 -23.52286 -22.40472 -22.15466 -21.15248 -19.11801 -17.69549 -16.63056 -16.02885 -15.60992 -15.02145 -14.72681 -14.38954 -14.15897 -13.81202 -13.41489 -13.27425 -12.76625 -12.45011 -12.24789 -12.11679 -11.71864 -11.59005 -11.26855 -11.21326 -11.05864 -10.88492 -10.66890 -10.53228 -10.24080 -10.21247 -9.72751 -8.89296 -8.54248 -8.52830 -7.67860 -7.35085 -7.07018 -6.27470 -4.75699 1.44698 1.77200 2.23175 3.02608 3.11641 3.19508 3.23225 4.03134 4.12558 4.36274 4.47586 4.88629 5.11606 5.26493 5.36880 5.42085 5.56877 5.66944 5.71639 5.76650 5.88122 5.92257 5.94618 6.06032 6.11447 6.23777 6.34052 6.45552 6.61434 6.71726 6.81049 6.96512 7.13797 7.37141 7.78204 8.12356 8.26030 8.94817 9.40806 10.48596 10.69807 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.015813 B = 0.008545 C = 0.006824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.286005 B = 3276.149813 C = 4101.960230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 H 0.081 0.919 4 C -0.133 4.133 5 C 0.129 3.871 6 N -0.604 5.604 7 C 0.566 3.434 8 O -0.574 6.574 9 C -0.532 4.532 10 H 0.070 0.930 11 C 0.092 3.908 12 N -0.752 5.752 13 Si 0.904 3.096 14 H -0.270 1.270 15 H -0.278 1.278 16 H -0.263 1.263 17 C 0.231 3.769 18 C -0.124 4.124 19 C -0.099 4.099 20 C -0.146 4.146 21 C -0.072 4.072 22 C -0.123 4.123 23 S -0.148 6.148 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.050 0.950 31 H 0.270 0.730 32 H 0.128 0.872 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.074 12.188 4.811 13.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.191 4.191 3 H 0.099 0.901 4 C -0.174 4.174 5 C 0.006 3.994 6 N -0.337 5.337 7 C 0.377 3.623 8 O -0.458 6.458 9 C -0.568 4.568 10 H 0.088 0.912 11 C -0.130 4.130 12 N -0.380 5.380 13 Si 0.728 3.272 14 H -0.195 1.195 15 H -0.203 1.203 16 H -0.187 1.187 17 C 0.134 3.866 18 C -0.146 4.146 19 C -0.118 4.118 20 C -0.166 4.166 21 C -0.094 4.094 22 C -0.237 4.237 23 S 0.088 5.912 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.146 0.854 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.941 10.850 4.733 12.477 hybrid contribution 1.196 0.338 0.085 1.246 sum -2.745 11.188 4.819 12.487 Atomic orbital electron populations 1.21603 0.92152 1.02836 1.02140 1.23063 0.98867 1.00811 0.96373 0.90087 1.21597 0.97606 1.02548 0.95625 1.20663 0.89556 0.95177 0.93983 1.46076 1.56878 1.12592 1.18191 1.16793 0.80725 0.77293 0.87473 1.90653 1.60007 1.63306 1.31803 1.20060 1.33536 0.93833 1.09362 0.91217 1.25720 0.94019 0.97771 0.95531 1.70014 1.34122 1.09112 1.24730 0.86402 0.79728 0.79460 0.81600 1.19543 1.20300 1.18653 1.17646 0.91377 0.89546 0.88046 1.21651 0.96144 0.97702 0.99080 1.21110 0.99168 0.97564 0.93945 1.21087 0.93140 1.02590 0.99798 1.21082 0.96216 0.95557 0.96497 1.22068 0.97350 1.05132 0.99121 1.85604 1.07606 1.63293 1.34731 0.91861 0.91476 0.91840 0.90134 0.91606 0.89621 0.93196 0.91921 0.85358 0.86227 0.86176 0.85545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.62 9.12 37.16 0.34 -1.28 16 2 C -0.06 -0.98 2.87 -27.15 -0.08 -1.06 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.13 -2.34 4.68 -28.43 -0.13 -2.47 16 5 C 0.13 2.54 5.54 -5.00 -0.03 2.51 16 6 N -0.60 -14.01 2.13 -117.60 -0.25 -14.26 16 7 C 0.57 16.08 7.41 -15.02 -0.11 15.97 16 8 O -0.57 -18.31 14.57 5.07 0.07 -18.24 16 9 C -0.53 -15.14 8.52 -37.63 -0.32 -15.46 16 10 H 0.07 1.90 6.17 -52.49 -0.32 1.58 16 11 C 0.09 2.57 5.49 -17.35 -0.10 2.47 16 12 N -0.75 -22.29 11.75 55.55 0.65 -21.64 16 13 Si 0.90 20.47 29.56 -169.99 -5.03 15.45 16 14 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 15 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 16 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 17 C 0.23 4.79 3.86 -83.69 -0.32 4.46 16 18 C -0.12 -2.31 8.85 -39.26 -0.35 -2.66 16 19 C -0.10 -1.49 10.01 -39.52 -0.40 -1.89 16 20 C -0.15 -2.06 10.06 -39.40 -0.40 -2.46 16 21 C -0.07 -1.13 9.85 -39.45 -0.39 -1.52 16 22 C -0.12 -2.33 5.70 -39.16 -0.22 -2.55 16 23 S -0.15 -2.76 20.83 -107.50 -2.24 -5.00 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.71 8.13 -51.93 -0.42 0.28 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.08 1.70 8.11 -51.93 -0.42 1.28 16 28 H 0.07 0.96 8.03 -51.93 -0.42 0.54 16 29 H 0.09 1.80 7.50 -51.93 -0.39 1.41 16 30 H 0.05 0.85 7.99 -51.93 -0.42 0.44 16 31 H 0.27 7.24 8.29 -40.82 -0.34 6.91 16 32 H 0.13 2.42 8.06 -52.49 -0.42 2.00 16 33 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 35 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 303.01 15.07 4.57 4.57 Total: -1.00 -33.44 303.01 -9.21 -42.65 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -4.48 Total: 2.41 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -2.50 Total: -5.92 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.40 Total: -35.90 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: 0.07 Total: -18.24 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.45 kcal Atomic # 16 Polarization: -2.76 SS G_CDS: -2.24 Total: -5.00 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.44 -9.21 -42.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547467648.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.402 kcal (2) G-P(sol) polarization free energy of solvation -33.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds