Wall clock time and date at job start Mon Mar 30 2020 02:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.37514 * 2 1 4 4 C 1.52174 * 109.28212 * 240.28508 * 2 1 3 5 5 C 1.50436 * 115.49976 * 169.36215 * 4 2 1 6 6 N 1.47093 * 111.46404 * 68.03884 * 5 4 2 7 7 C 1.34770 * 120.84392 * 89.57603 * 6 5 4 8 8 O 1.21831 * 120.00109 * 359.97438 * 7 6 5 9 9 C 1.41496 * 120.00371 * 179.97438 * 7 6 5 10 10 H 1.07993 * 119.99550 * 354.07520 * 9 7 6 11 11 C 1.40141 * 119.99702 * 174.07922 * 9 7 6 12 12 N 1.30619 * 120.00735 * 6.35721 * 11 9 7 13 13 Si 1.86808 * 119.99380 * 186.35405 * 11 9 7 14 14 H 1.48504 * 109.47039 * 94.98797 * 13 11 9 15 15 H 1.48500 * 109.46843 * 214.98374 * 13 11 9 16 16 H 1.48494 * 109.47512 * 334.98594 * 13 11 9 17 17 C 1.39387 * 118.31708 * 269.55518 * 6 5 4 18 18 C 1.39281 * 119.69908 * 254.08898 * 17 6 5 19 19 C 1.38070 * 119.64219 * 175.73446 * 18 17 6 20 20 C 1.38582 * 120.73094 * 359.96187 * 19 18 17 21 21 C 1.38379 * 120.12483 * 0.89911 * 20 19 18 22 22 C 1.38441 * 119.20331 * 0.02562 * 21 20 19 23 23 S 1.77622 * 120.42623 * 176.48838 * 22 21 20 24 24 H 1.09000 * 109.47241 * 300.23920 * 1 2 3 25 25 H 1.09004 * 109.46987 * 60.23652 * 1 2 3 26 26 H 1.08999 * 109.47257 * 180.24183 * 1 2 3 27 27 H 1.09005 * 108.28049 * 290.92143 * 4 2 1 28 28 H 1.08999 * 108.27915 * 47.98584 * 4 2 1 29 29 H 1.09000 * 109.08212 * 188.55135 * 5 4 2 30 30 H 1.08998 * 109.07667 * 307.59322 * 5 4 2 31 31 H 0.96997 * 120.00553 * 179.97438 * 12 11 9 32 32 H 1.07994 * 120.17852 * 355.70299 * 18 17 6 33 33 H 1.08000 * 119.62981 * 179.97438 * 19 18 17 34 34 H 1.07998 * 119.93977 * 180.92371 * 20 19 18 35 35 H 1.07998 * 120.39870 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8916 1.0282 0.0000 4 6 2.0325 -0.7120 -1.2475 5 6 3.5060 -0.5789 -1.5199 6 7 4.3063 -1.2896 -0.5109 7 6 4.6417 -2.5837 -0.6812 8 8 4.2811 -3.1801 -1.6806 9 6 5.4126 -3.2500 0.3006 10 1 5.8130 -2.6986 1.1384 11 6 5.6566 -4.6252 0.1856 12 7 5.2801 -5.2679 -0.8874 13 14 6.5204 -5.5391 1.5670 14 1 5.5079 -6.1532 2.4631 15 1 7.3834 -6.6026 0.9930 16 1 7.3563 -4.5882 2.3428 17 6 4.7093 -0.5906 0.6256 18 6 6.0375 -0.1920 0.7558 19 6 6.4170 0.5761 1.8385 20 6 5.4909 0.9556 2.7970 21 6 4.1722 0.5505 2.6873 22 6 3.7943 -0.2356 1.6122 23 16 2.1327 -0.8510 1.4880 24 1 -0.3634 0.5175 0.8878 25 1 -0.3633 0.5102 -0.8921 26 1 -0.3634 -1.0276 0.0043 27 1 1.7965 -1.7721 -1.1546 28 1 1.4915 -0.3175 -2.1076 29 1 3.7251 -0.9923 -2.5044 30 1 3.7764 0.4770 -1.5088 31 1 5.4493 -6.2197 -0.9671 32 1 6.7667 -0.4826 0.0140 33 1 7.4471 0.8847 1.9394 34 1 5.7986 1.5690 3.6308 35 1 3.4469 0.8433 3.4319 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547467648.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:09 Heat of formation + Delta-G solvation = -26.260848 kcal Electronic energy + Delta-G solvation = -19788.939099 eV Core-core repulsion = 16877.101778 eV Total energy + Delta-G solvation = -2911.837321 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.01446 -38.98245 -37.07605 -35.09291 -34.62916 -31.91906 -31.28219 -29.78642 -28.33026 -24.91689 -23.89807 -23.59723 -22.56836 -20.89391 -19.38137 -18.01323 -17.73788 -17.55084 -16.48145 -16.20845 -16.08803 -15.58120 -15.16161 -14.87904 -14.70168 -14.46845 -14.21865 -13.74459 -13.33312 -13.30300 -13.09885 -12.88381 -12.74406 -12.64619 -12.52259 -12.27456 -12.03224 -11.91314 -11.79965 -11.09175 -10.97832 -10.21846 -9.85977 -9.66884 -9.11770 -8.51408 -8.36746 -6.95631 0.14126 0.44745 0.87486 1.32173 1.33683 1.49122 1.69082 2.17746 2.37739 2.66572 2.82865 3.53174 3.63518 3.88430 4.06651 4.16376 4.21119 4.24722 4.43049 4.49070 4.59146 4.65938 4.71699 4.77023 4.81763 4.92162 5.02930 5.18377 5.23417 5.24866 5.38621 5.54152 5.57329 5.82803 5.98475 6.19567 6.29467 6.78699 7.42797 8.40138 8.60092 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.015813 B = 0.008545 C = 0.006824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.286005 B = 3276.149813 C = 4101.960230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.047 4.047 3 H 0.099 0.901 4 C -0.125 4.125 5 C 0.124 3.876 6 N -0.605 5.605 7 C 0.556 3.444 8 O -0.627 6.627 9 C -0.554 4.554 10 H 0.076 0.924 11 C 0.036 3.964 12 N -0.802 5.802 13 Si 0.985 3.015 14 H -0.265 1.265 15 H -0.264 1.264 16 H -0.250 1.250 17 C 0.187 3.813 18 C -0.143 4.143 19 C -0.089 4.089 20 C -0.125 4.125 21 C -0.070 4.070 22 C -0.132 4.132 23 S -0.200 6.200 24 H 0.079 0.921 25 H 0.095 0.905 26 H 0.048 0.952 27 H 0.034 0.966 28 H 0.099 0.901 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.277 0.723 32 H 0.111 0.889 33 H 0.155 0.845 34 H 0.167 0.833 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.531 14.570 7.571 16.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.175 4.175 3 H 0.117 0.883 4 C -0.165 4.165 5 C 0.002 3.998 6 N -0.336 5.336 7 C 0.367 3.633 8 O -0.516 6.516 9 C -0.590 4.590 10 H 0.094 0.906 11 C -0.182 4.182 12 N -0.431 5.431 13 Si 0.805 3.195 14 H -0.190 1.190 15 H -0.188 1.188 16 H -0.173 1.173 17 C 0.092 3.908 18 C -0.164 4.164 19 C -0.108 4.108 20 C -0.145 4.145 21 C -0.092 4.092 22 C -0.245 4.245 23 S 0.035 5.965 24 H 0.098 0.902 25 H 0.114 0.886 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.118 0.882 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.129 0.871 33 H 0.173 0.827 34 H 0.185 0.815 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.402 13.298 7.516 15.649 hybrid contribution 1.025 -0.252 -0.770 1.307 sum -2.377 13.045 6.745 14.877 Atomic orbital electron populations 1.21620 0.89569 1.02620 1.04339 1.23124 1.00703 1.00506 0.93139 0.88287 1.21498 0.96427 1.00247 0.98364 1.20820 0.90796 0.96030 0.92146 1.45643 1.56730 1.11530 1.19722 1.17007 0.80513 0.78990 0.86794 1.90592 1.61916 1.65509 1.33546 1.20405 1.34128 0.94813 1.09629 0.90620 1.26902 0.94411 0.98530 0.98335 1.70156 1.35723 1.09835 1.27355 0.85188 0.78581 0.78137 0.77642 1.18984 1.18799 1.17271 1.17882 0.92879 0.91788 0.88258 1.21666 0.94963 0.99310 1.00511 1.21495 1.01256 0.95655 0.92422 1.21610 0.91833 1.01016 1.00005 1.21469 0.97713 0.94368 0.95616 1.22159 0.96567 1.05971 0.99826 1.85695 1.08590 1.65324 1.36900 0.90213 0.88610 0.93268 0.94673 0.88238 0.92217 0.90344 0.91297 0.87057 0.82690 0.81508 0.82966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.85 9.12 71.98 0.66 -2.19 16 2 C -0.05 -1.41 2.87 30.32 0.09 -1.32 16 3 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 4 C -0.13 -4.47 4.68 29.49 0.14 -4.33 16 5 C 0.12 5.09 5.54 85.44 0.47 5.57 16 6 N -0.60 -29.30 2.13 -644.15 -1.37 -30.67 16 7 C 0.56 33.44 7.41 85.05 0.63 34.07 16 8 O -0.63 -42.90 14.57 -4.77 -0.07 -42.97 16 9 C -0.55 -32.76 8.52 23.54 0.20 -32.56 16 10 H 0.08 4.23 6.17 -2.91 -0.02 4.22 16 11 C 0.04 2.07 5.49 85.34 0.47 2.54 16 12 N -0.80 -49.72 11.75 21.85 0.26 -49.46 16 13 Si 0.99 42.55 29.56 68.60 2.03 44.58 16 14 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 15 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 16 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 17 C 0.19 7.82 3.86 38.41 0.15 7.97 16 18 C -0.14 -5.24 8.85 22.48 0.20 -5.04 16 19 C -0.09 -2.39 10.01 22.31 0.22 -2.17 16 20 C -0.13 -2.92 10.06 22.39 0.23 -2.69 16 21 C -0.07 -1.97 9.85 22.35 0.22 -1.75 16 22 C -0.13 -4.85 5.70 22.54 0.13 -4.72 16 23 S -0.20 -7.48 20.83 -56.49 -1.18 -8.66 16 24 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.10 1.70 8.13 -2.38 -0.02 1.68 16 26 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.03 1.57 8.11 -2.38 -0.02 1.55 16 28 H 0.10 2.83 8.03 -2.39 -0.02 2.81 16 29 H 0.06 2.70 7.50 -2.39 -0.02 2.68 16 30 H 0.08 2.70 7.99 -2.39 -0.02 2.68 16 31 H 0.28 15.46 8.29 -92.71 -0.77 14.69 16 32 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16 33 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 34 H 0.17 2.44 8.06 -2.91 -0.02 2.41 16 35 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -79.21 303.01 4.55 -74.66 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 1.09 Total: 19.15 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: 3.80 Total: -6.63 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -1.11 Total: -80.13 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -0.07 Total: -42.97 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 16 Polarization: -7.48 SS G_CDS: -1.18 Total: -8.66 kcal Total: -79.21 4.55 -74.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547467648.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.395 kcal (2) G-P(sol) polarization free energy of solvation -79.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds