Wall clock time and date at job start Mon Mar 30 2020 01:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99952 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99914 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00007 * 3 2 1 7 7 C 1.38950 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99776 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99816 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99959 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99643 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00078 * 179.97438 * 10 9 7 13 13 H 1.09001 * 109.50167 * 300.07000 * 12 10 9 14 14 C 1.53041 * 109.49371 * 60.16940 * 12 10 9 15 15 C 1.53039 * 109.53749 * 181.31585 * 14 12 10 16 16 C 1.53199 * 109.31094 * 298.63477 * 15 14 12 17 17 N 1.46925 * 108.77485 * 54.63242 * 16 15 14 18 18 S 1.65595 * 120.62566 * 126.37236 * 17 16 15 19 19 N 1.65605 * 107.21985 * 270.01929 * 18 17 16 20 20 O 1.42099 * 106.40557 * 23.56233 * 18 17 16 21 21 O 1.42106 * 106.40235 * 156.47982 * 18 17 16 22 22 C 1.46916 * 118.74142 * 306.39194 * 17 16 15 23 23 H 0.96996 * 120.00340 * 179.97438 * 1 2 3 24 24 H 0.97000 * 120.00486 * 0.02562 * 9 7 2 25 25 H 1.09004 * 109.45928 * 301.33294 * 14 12 10 26 26 H 1.08997 * 109.46090 * 61.29529 * 14 12 10 27 27 H 1.09000 * 109.49944 * 178.68023 * 15 14 12 28 28 H 1.08995 * 109.52410 * 58.59821 * 15 14 12 29 29 H 1.09007 * 109.58464 * 294.84323 * 16 15 14 30 30 H 1.09002 * 109.58371 * 174.42491 * 16 15 14 31 31 H 0.96997 * 119.99744 * 0.02562 * 19 18 17 32 32 H 0.96995 * 119.99957 * 179.97438 * 19 18 17 33 33 H 1.08997 * 109.58776 * 293.82404 * 22 17 16 34 34 H 1.09004 * 109.70849 * 173.46732 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2832 2.7465 -0.0006 5 1 3.1019 1.6964 1.2125 6 1 3.1019 1.6964 -1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3233 -2.3906 0.0016 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5578 0.0011 12 6 1.2437 -4.8629 0.0034 13 1 0.6169 -4.9200 0.8933 14 6 0.3653 -4.9472 -1.2471 15 6 -0.4251 -6.2575 -1.2300 16 6 0.5509 -7.4382 -1.2442 17 7 1.4926 -7.2868 -0.1265 18 16 1.7085 -8.5119 0.9665 19 7 0.6126 -8.2795 2.1861 20 8 1.3261 -9.7107 0.3064 21 8 2.9941 -8.3163 1.5396 22 6 2.2386 -6.0278 0.0031 23 1 -0.4850 -0.8400 -0.0004 24 1 0.3533 -2.3906 0.0016 25 1 -0.3272 -4.1055 -1.2618 26 1 0.9951 -4.9147 -2.1361 27 1 -1.0679 -6.3062 -2.1089 28 1 -1.0369 -6.3021 -0.3290 29 1 1.0999 -7.4472 -2.1859 30 1 -0.0021 -8.3708 -1.1323 31 1 0.0044 -7.5245 2.1543 32 1 0.5783 -8.8988 2.9319 33 1 2.9251 -5.9217 -0.8369 34 1 2.8010 -6.0282 0.9368 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590446057.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:39 Heat of formation + Delta-G solvation = -124.195358 kcal Electronic energy + Delta-G solvation = -20338.749492 eV Core-core repulsion = 17011.816148 eV Total energy + Delta-G solvation = -3326.933343 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.093 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.41435 -37.43127 -37.21207 -35.87827 -34.42543 -33.26529 -32.67607 -31.26238 -30.79314 -25.21664 -24.62153 -23.35328 -21.15727 -19.57910 -19.19421 -18.35558 -17.98955 -17.56361 -16.49757 -16.19024 -15.89997 -14.99894 -14.65648 -14.49257 -14.02092 -13.90828 -13.71310 -13.42615 -12.77599 -12.63402 -12.27411 -12.12569 -12.02169 -11.93704 -11.44435 -11.27469 -11.04569 -11.01423 -10.86115 -10.58969 -10.45958 -10.24143 -9.92116 -9.62098 -9.22392 -8.47152 -8.10964 -6.81947 -3.95497 0.50597 2.76522 3.26186 3.32115 3.47102 3.51963 3.73530 4.18138 4.42575 4.49414 4.77423 4.84904 4.94002 5.07457 5.15233 5.24629 5.38897 5.45989 5.70632 5.74770 5.82468 5.88291 5.95114 6.07475 6.13201 6.27542 6.36461 6.49516 6.90189 7.72756 8.01567 8.51320 8.71159 9.39860 9.78274 10.61105 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.036366 B = 0.004404 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.768329 B = 6356.090900 C = 6671.618931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C -0.007 4.007 3 Si 1.091 2.909 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.384 4.384 8 H 0.100 0.900 9 N -0.568 5.568 10 C 0.447 3.553 11 O -0.587 6.587 12 C -0.113 4.113 13 H 0.084 0.916 14 C -0.110 4.110 15 C -0.133 4.133 16 C 0.118 3.882 17 N -1.001 6.001 18 S 2.796 3.204 19 N -1.265 6.265 20 O -0.988 6.988 21 O -0.979 6.979 22 C 0.144 3.856 23 H 0.261 0.739 24 H 0.376 0.624 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.414 0.586 32 H 0.416 0.584 33 H 0.085 0.915 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.061 -13.914 0.350 14.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.210 4.210 3 Si 0.917 3.083 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.513 4.513 8 H 0.118 0.882 9 N -0.205 5.205 10 C 0.232 3.768 11 O -0.472 6.472 12 C -0.137 4.137 13 H 0.102 0.898 14 C -0.148 4.148 15 C -0.172 4.172 16 C -0.007 4.007 17 N -0.842 5.842 18 S 2.801 3.199 19 N -0.938 5.938 20 O -0.970 6.970 21 O -0.962 6.962 22 C 0.019 3.981 23 H 0.072 0.928 24 H 0.209 0.791 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.241 0.759 32 H 0.245 0.755 33 H 0.103 0.897 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.616 -13.003 0.138 13.497 hybrid contribution -1.068 -1.260 0.400 1.699 sum -4.685 -14.263 0.538 15.022 Atomic orbital electron populations 1.70915 1.06532 1.29362 1.46925 1.26520 0.96504 1.02671 0.95300 0.83137 0.74465 0.73604 0.77142 1.20398 1.20955 1.20966 1.20569 0.94763 0.83874 1.52135 0.88226 1.41944 1.08209 1.05527 1.64810 1.19574 0.88085 0.84371 0.84758 1.90552 1.13734 1.87093 1.55826 1.21521 0.97795 0.94704 0.99641 0.89821 1.21498 0.98281 0.97316 0.97675 1.21955 0.97685 0.94823 1.02756 1.21512 0.90592 0.98889 0.89688 1.57799 1.54730 1.31463 1.40246 1.01597 0.73332 0.72376 0.72586 1.53573 1.57100 1.41277 1.41872 1.93610 1.83810 1.45035 1.74578 1.93649 1.39384 1.85351 1.77777 1.21240 0.92342 0.79655 1.04867 0.92795 0.79059 0.91147 0.91085 0.90352 0.91495 0.90581 0.89186 0.75883 0.75464 0.89657 0.88447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.35 13.68 55.50 0.76 -23.59 16 2 C -0.01 -0.19 5.50 -17.47 -0.10 -0.29 16 3 Si 1.09 23.66 29.92 -169.99 -5.09 18.57 16 4 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.38 -10.45 9.68 -14.93 -0.14 -10.60 16 8 H 0.10 2.89 7.16 -52.49 -0.38 2.51 16 9 N -0.57 -13.58 5.17 -10.97 -0.06 -13.64 16 10 C 0.45 9.94 7.11 -10.98 -0.08 9.86 16 11 O -0.59 -15.41 15.50 5.55 0.09 -15.33 16 12 C -0.11 -1.78 2.68 -91.65 -0.25 -2.02 16 13 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 14 C -0.11 -1.44 5.08 -26.69 -0.14 -1.58 16 15 C -0.13 -1.27 6.08 -26.61 -0.16 -1.43 16 16 C 0.12 1.19 6.38 -3.71 -0.02 1.16 16 17 N -1.00 -11.96 3.35 -113.52 -0.38 -12.34 16 18 S 2.80 34.00 6.70 -107.50 -0.72 33.28 16 19 N -1.26 -10.48 9.58 60.35 0.58 -9.90 16 20 O -0.99 -14.10 16.85 -57.17 -0.96 -15.07 16 21 O -0.98 -15.82 16.86 -57.17 -0.96 -16.79 16 22 C 0.14 2.18 5.01 -3.71 -0.02 2.16 16 23 H 0.26 6.75 6.78 -40.82 -0.28 6.47 16 24 H 0.38 8.24 6.14 -40.82 -0.25 7.99 16 25 H 0.07 0.95 7.54 -51.93 -0.39 0.56 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 30 H 0.09 0.79 7.13 -51.93 -0.37 0.42 16 31 H 0.41 2.71 8.96 -34.47 -0.31 2.41 16 32 H 0.42 2.72 8.96 -34.47 -0.31 2.41 16 33 H 0.09 1.40 7.96 -51.93 -0.41 0.98 16 34 H 0.10 1.59 7.13 -51.93 -0.37 1.22 16 LS Contribution 294.89 15.07 4.44 4.44 Total: -1.00 -35.67 294.89 -7.18 -42.85 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -3.97 Total: 10.23 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -0.90 Total: -2.73 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: 0.90 Total: -59.47 kcal Atomic # 8 Polarization: -45.34 SS G_CDS: -1.84 Total: -47.18 kcal Atomic # 14 Polarization: 23.66 SS G_CDS: -5.09 Total: 18.57 kcal Atomic # 16 Polarization: 34.00 SS G_CDS: -0.72 Total: 33.28 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -35.67 -7.18 -42.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590446057.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.345 kcal (2) G-P(sol) polarization free energy of solvation -35.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds