Wall clock time and date at job start Mon Mar 30 2020 01:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99952 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99914 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00007 * 3 2 1 7 7 C 1.38950 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99776 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99816 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99959 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99643 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00078 * 179.97438 * 10 9 7 13 13 H 1.09001 * 109.50167 * 300.07000 * 12 10 9 14 14 C 1.53041 * 109.49371 * 60.16940 * 12 10 9 15 15 C 1.53039 * 109.53749 * 181.31585 * 14 12 10 16 16 C 1.53199 * 109.31094 * 298.63477 * 15 14 12 17 17 N 1.46925 * 108.77485 * 54.63242 * 16 15 14 18 18 S 1.65595 * 120.62566 * 126.37236 * 17 16 15 19 19 N 1.65605 * 107.21985 * 270.01929 * 18 17 16 20 20 O 1.42099 * 106.40557 * 23.56233 * 18 17 16 21 21 O 1.42106 * 106.40235 * 156.47982 * 18 17 16 22 22 C 1.46916 * 118.74142 * 306.39194 * 17 16 15 23 23 H 0.96996 * 120.00340 * 179.97438 * 1 2 3 24 24 H 0.97000 * 120.00486 * 0.02562 * 9 7 2 25 25 H 1.09004 * 109.45928 * 301.33294 * 14 12 10 26 26 H 1.08997 * 109.46090 * 61.29529 * 14 12 10 27 27 H 1.09000 * 109.49944 * 178.68023 * 15 14 12 28 28 H 1.08995 * 109.52410 * 58.59821 * 15 14 12 29 29 H 1.09007 * 109.58464 * 294.84323 * 16 15 14 30 30 H 1.09002 * 109.58371 * 174.42491 * 16 15 14 31 31 H 0.96997 * 119.99744 * 0.02562 * 19 18 17 32 32 H 0.96995 * 119.99957 * 179.97438 * 19 18 17 33 33 H 1.08997 * 109.58776 * 293.82404 * 22 17 16 34 34 H 1.09004 * 109.70849 * 173.46732 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2832 2.7465 -0.0006 5 1 3.1019 1.6964 1.2125 6 1 3.1019 1.6964 -1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3233 -2.3906 0.0016 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5578 0.0011 12 6 1.2437 -4.8629 0.0034 13 1 0.6169 -4.9200 0.8933 14 6 0.3653 -4.9472 -1.2471 15 6 -0.4251 -6.2575 -1.2300 16 6 0.5509 -7.4382 -1.2442 17 7 1.4926 -7.2868 -0.1265 18 16 1.7085 -8.5119 0.9665 19 7 0.6126 -8.2795 2.1861 20 8 1.3261 -9.7107 0.3064 21 8 2.9941 -8.3163 1.5396 22 6 2.2386 -6.0278 0.0031 23 1 -0.4850 -0.8400 -0.0004 24 1 0.3533 -2.3906 0.0016 25 1 -0.3272 -4.1055 -1.2618 26 1 0.9951 -4.9147 -2.1361 27 1 -1.0679 -6.3062 -2.1089 28 1 -1.0369 -6.3021 -0.3290 29 1 1.0999 -7.4472 -2.1859 30 1 -0.0021 -8.3708 -1.1323 31 1 0.0044 -7.5245 2.1543 32 1 0.5783 -8.8988 2.9319 33 1 2.9251 -5.9217 -0.8369 34 1 2.8010 -6.0282 0.9368 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590446057.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:38 Heat of formation + Delta-G solvation = -155.075734 kcal Electronic energy + Delta-G solvation = -20340.088565 eV Core-core repulsion = 17011.816148 eV Total energy + Delta-G solvation = -3328.272417 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.92571 -38.81013 -38.33557 -36.98384 -36.40102 -34.03485 -33.91954 -32.82688 -32.16532 -27.02989 -25.65895 -24.78860 -22.29140 -21.07389 -20.25819 -19.98014 -19.35726 -18.50215 -17.94908 -17.22662 -17.01320 -16.69691 -16.00756 -15.58537 -15.57587 -15.19361 -15.15235 -14.67348 -14.24216 -13.79828 -13.40010 -13.28271 -13.26845 -13.16105 -13.04505 -12.81385 -12.49689 -12.04723 -11.93691 -11.91485 -11.84930 -11.56359 -11.49023 -11.34648 -10.41841 -10.15323 -10.09013 -8.91809 -6.06168 -0.48304 1.52296 1.56002 1.79473 1.83613 1.99154 2.42692 2.55691 2.98675 3.16823 3.49369 3.53462 3.79202 3.88848 4.00919 4.17264 4.24732 4.43183 4.49917 4.75727 4.81350 4.96004 5.01138 5.08912 5.12165 5.28513 5.38028 5.48260 5.64820 5.97126 6.33373 6.56150 6.73325 7.43695 7.91273 8.55799 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.036366 B = 0.004404 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.768329 B = 6356.090900 C = 6671.618931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.038 4.038 3 Si 1.131 2.869 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.412 4.412 8 H 0.072 0.928 9 N -0.577 5.577 10 C 0.445 3.555 11 O -0.631 6.631 12 C -0.102 4.102 13 H 0.113 0.887 14 C -0.107 4.107 15 C -0.123 4.123 16 C 0.110 3.890 17 N -0.995 5.995 18 S 2.818 3.182 19 N -1.248 6.248 20 O -1.006 7.006 21 O -1.022 7.022 22 C 0.152 3.848 23 H 0.260 0.740 24 H 0.386 0.614 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.104 0.896 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.111 0.889 31 H 0.426 0.574 32 H 0.427 0.573 33 H 0.066 0.934 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.915 -14.700 0.391 16.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.236 4.236 3 Si 0.951 3.049 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.542 4.542 8 H 0.090 0.910 9 N -0.215 5.215 10 C 0.233 3.767 11 O -0.519 6.519 12 C -0.125 4.125 13 H 0.131 0.869 14 C -0.146 4.146 15 C -0.161 4.161 16 C -0.014 4.014 17 N -0.836 5.836 18 S 2.823 3.177 19 N -0.927 5.927 20 O -0.988 6.988 21 O -1.005 7.005 22 C 0.026 3.974 23 H 0.071 0.929 24 H 0.221 0.779 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.122 0.878 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.129 0.871 31 H 0.256 0.744 32 H 0.259 0.741 33 H 0.084 0.916 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.512 -13.823 0.179 14.883 hybrid contribution -0.491 -1.101 0.388 1.267 sum -6.003 -14.925 0.567 16.097 Atomic orbital electron populations 1.70976 1.06913 1.29570 1.47811 1.27721 0.96673 1.05135 0.94119 0.82654 0.73854 0.70551 0.77838 1.19717 1.19982 1.19964 1.20532 0.93939 0.85775 1.53924 0.90991 1.41955 1.08645 1.05304 1.65590 1.20773 0.87935 0.86024 0.81973 1.90523 1.16180 1.88118 1.57039 1.21492 0.97823 0.90666 1.02513 0.86867 1.21500 0.97882 0.99763 0.95410 1.21942 0.97284 0.91749 1.05162 1.21794 0.90463 1.00178 0.89010 1.57604 1.54986 1.29772 1.41211 1.00723 0.72721 0.71716 0.72523 1.53140 1.56283 1.42022 1.41269 1.93589 1.83962 1.45979 1.75286 1.93603 1.42422 1.85835 1.78629 1.20920 0.92173 0.80901 1.03401 0.92858 0.77915 0.91342 0.92445 0.87809 0.89278 0.90385 0.87100 0.74415 0.74094 0.91554 0.89942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.15 13.68 21.66 0.30 -48.86 16 2 C -0.04 -1.98 5.50 84.93 0.47 -1.51 16 3 Si 1.13 47.43 29.92 68.60 2.05 49.48 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 6 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.41 -22.91 9.68 84.04 0.81 -22.10 16 8 H 0.07 4.33 7.16 -2.91 -0.02 4.31 16 9 N -0.58 -27.90 5.17 -306.99 -1.59 -29.49 16 10 C 0.45 20.07 7.11 87.66 0.62 20.69 16 11 O -0.63 -34.25 15.50 -3.07 -0.05 -34.30 16 12 C -0.10 -3.09 2.68 -11.46 -0.03 -3.12 16 13 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 14 C -0.11 -2.61 5.08 30.62 0.16 -2.46 16 15 C -0.12 -1.86 6.08 30.67 0.19 -1.67 16 16 C 0.11 1.86 6.38 86.37 0.55 2.41 16 17 N -0.99 -21.96 3.35 -513.06 -1.72 -23.67 16 18 S 2.82 63.91 6.70 -56.49 -0.38 63.53 16 19 N -1.25 -17.29 9.58 37.02 0.35 -16.93 16 20 O -1.01 -26.65 16.85 -128.00 -2.16 -28.80 16 21 O -1.02 -32.68 16.86 -128.00 -2.16 -34.84 16 22 C 0.15 4.56 5.01 86.37 0.43 4.99 16 23 H 0.26 13.41 6.78 -92.71 -0.63 12.78 16 24 H 0.39 16.88 6.14 -92.71 -0.57 16.31 16 25 H 0.07 1.72 7.54 -2.38 -0.02 1.70 16 26 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.11 1.51 7.13 -2.39 -0.02 1.49 16 31 H 0.43 4.09 8.96 -96.75 -0.87 3.22 16 32 H 0.43 4.43 8.96 -96.75 -0.87 3.57 16 33 H 0.07 2.22 7.96 -2.39 -0.02 2.21 16 34 H 0.08 2.72 7.13 -2.38 -0.02 2.70 16 Total: -1.00 -78.42 294.89 -3.14 -81.57 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: -1.00 Total: 25.08 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 3.20 Total: -2.76 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -2.65 Total: -118.95 kcal Atomic # 8 Polarization: -93.58 SS G_CDS: -4.36 Total: -97.94 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.05 Total: 49.48 kcal Atomic # 16 Polarization: 63.91 SS G_CDS: -0.38 Total: 63.53 kcal Total: -78.42 -3.14 -81.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590446057.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.508 kcal (2) G-P(sol) polarization free energy of solvation -78.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds