Wall clock time and date at job start Mon Mar 30 2020 01:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38176 * 120.03949 * 2 1 4 4 C 1.38411 * 119.43744 * 179.97438 * 3 2 1 5 5 C 1.37549 * 120.83133 * 359.97438 * 4 3 2 6 6 C 1.40297 * 120.74453 * 0.02562 * 5 4 3 7 7 C 1.38297 * 120.04060 * 179.97438 * 2 1 3 8 8 S 1.76891 * 132.38363 * 0.02662 * 7 2 1 9 9 C 1.77148 * 94.69320 * 179.81812 * 8 7 2 10 10 O 1.21717 * 126.94447 * 180.24080 * 9 8 7 11 11 N 1.33657 * 106.11298 * 0.31532 * 9 8 7 12 12 C 1.46504 * 120.67624 * 179.88740 * 11 9 8 13 13 C 1.53006 * 109.46883 * 269.71952 * 12 11 9 14 14 C 1.52997 * 109.47127 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47242 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99967 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00542 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99408 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00405 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47155 * 60.00002 * 19 17 15 21 21 H 1.48503 * 109.47086 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46879 * 300.00005 * 19 17 15 23 23 H 1.08996 * 109.47685 * 270.02292 * 1 2 3 24 24 H 1.09009 * 109.47057 * 30.02610 * 1 2 3 25 25 H 1.09002 * 109.47059 * 150.02333 * 1 2 3 26 26 H 1.07998 * 120.28177 * 359.97438 * 3 2 1 27 27 H 1.07993 * 119.58207 * 180.02562 * 4 3 2 28 28 H 1.07997 * 119.62668 * 180.02562 * 5 4 3 29 29 H 1.09001 * 109.46891 * 149.72387 * 12 11 9 30 30 H 1.08993 * 109.47378 * 29.71759 * 12 11 9 31 31 H 1.09001 * 109.46801 * 300.00349 * 13 12 11 32 32 H 1.09001 * 109.46998 * 59.99945 * 13 12 11 33 33 H 1.08996 * 109.46952 * 300.00302 * 14 13 12 34 34 H 1.09001 * 109.46832 * 60.00321 * 14 13 12 35 35 H 0.96999 * 119.99910 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1987 1.1962 0.0000 4 6 3.5827 1.1816 0.0005 5 6 4.2752 -0.0068 0.0016 6 6 3.5945 -1.2336 0.0016 7 6 2.1993 -1.1972 0.0005 8 16 1.6652 -2.8835 0.0007 9 6 3.3045 -3.5548 -0.0041 10 8 3.6129 -4.7323 -0.0099 11 7 4.1344 -2.5071 0.0015 12 6 5.5862 -2.7036 0.0021 13 6 6.0911 -2.7716 1.4449 14 6 7.6073 -2.9762 1.4455 15 6 8.1045 -3.0438 2.8665 16 1 7.4085 -2.9507 3.6871 17 6 9.4478 -3.2246 3.1191 18 7 10.2952 -3.3385 2.1198 19 14 10.0640 -3.3092 4.8805 20 1 9.4115 -4.4456 5.5791 21 1 11.5357 -3.5076 4.8811 22 1 9.7344 -2.0422 5.5815 23 1 -0.3634 0.0004 1.0276 24 1 -0.3634 0.8898 -0.5143 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6640 2.1345 -0.0004 27 1 4.1257 2.1151 0.0010 28 1 5.3551 0.0045 0.0024 29 1 6.0658 -1.8704 -0.5117 30 1 5.8271 -3.6343 -0.5114 31 1 5.8501 -1.8409 1.9584 32 1 5.6115 -3.6048 1.9587 33 1 7.8486 -3.9067 0.9318 34 1 8.0865 -2.1427 0.9318 35 1 11.2402 -3.4660 2.2974 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592353610.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:07 Heat of formation + Delta-G solvation = -14.099412 kcal Electronic energy + Delta-G solvation = -18557.632202 eV Core-core repulsion = 15646.322241 eV Total energy + Delta-G solvation = -2911.309962 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.98074 -38.88335 -36.51022 -34.16209 -32.81536 -32.07593 -29.91931 -27.95577 -26.76432 -24.57229 -23.43840 -21.87633 -21.15478 -20.23846 -18.62618 -17.23756 -16.73903 -16.19649 -15.97579 -15.60446 -14.94587 -14.48761 -14.33230 -14.07713 -14.00134 -13.58334 -12.95911 -12.79787 -12.46045 -12.28909 -12.20335 -11.79003 -11.55547 -11.12744 -10.96844 -10.87179 -10.70034 -10.49604 -10.13195 -9.97860 -9.84724 -9.46455 -9.19648 -8.40239 -8.27620 -7.96916 -6.05274 -4.08071 0.87055 0.87227 0.98098 1.62510 2.17274 2.80387 3.31224 3.35520 3.38435 3.42499 4.27738 4.42355 4.62295 4.87944 4.96587 5.05617 5.16235 5.30344 5.32502 5.34107 5.47896 5.59980 5.62470 5.82294 5.86233 6.07370 6.09903 6.27115 6.33211 6.52309 6.65656 6.89661 6.92336 7.39459 7.55935 7.68081 7.92398 8.34407 8.97441 9.56363 11.06014 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.023251 B = 0.004275 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.965682 B = 6548.125220 C = 7182.909264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.016 4.016 3 C -0.133 4.133 4 C -0.077 4.077 5 C -0.122 4.122 6 C 0.148 3.852 7 C -0.152 4.152 8 S -0.037 6.037 9 C 0.523 3.477 10 O -0.456 6.456 11 N -0.531 5.531 12 C 0.097 3.903 13 C -0.123 4.123 14 C 0.026 3.974 15 C -0.522 4.522 16 H 0.054 0.946 17 C 0.059 3.941 18 N -0.895 5.895 19 Si 0.893 3.107 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.134 0.866 27 H 0.135 0.865 28 H 0.137 0.863 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.020 0.980 34 H 0.019 0.981 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.219 10.409 -6.830 22.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.022 4.022 3 C -0.154 4.154 4 C -0.097 4.097 5 C -0.144 4.144 6 C 0.043 3.957 7 C -0.269 4.269 8 S 0.206 5.794 9 C 0.203 3.797 10 O -0.333 6.333 11 N -0.251 5.251 12 C -0.026 4.026 13 C -0.161 4.161 14 C -0.011 4.011 15 C -0.560 4.560 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 H 0.096 0.904 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.152 0.848 27 H 0.153 0.847 28 H 0.155 0.845 29 H 0.107 0.893 30 H 0.112 0.888 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.038 0.962 34 H 0.037 0.963 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.012 8.876 -6.882 22.082 hybrid contribution 1.788 0.459 1.002 2.100 sum -17.224 9.335 -5.880 20.454 Atomic orbital electron populations 1.20844 0.90307 1.03216 1.03012 1.18925 0.95932 0.89859 0.97436 1.20961 0.94088 0.96835 1.03509 1.20872 0.94171 0.97381 0.97276 1.20675 1.00704 0.88911 1.04070 1.17968 0.91633 0.85728 1.00333 1.21468 0.94018 0.96544 1.14857 1.85691 1.10859 0.98007 1.84883 1.21815 0.89452 0.87576 0.80842 1.90951 1.76435 1.13814 1.52051 1.46020 1.10100 1.03583 1.65438 1.22327 0.74799 1.03918 1.01591 1.22025 1.00840 1.01346 0.91935 1.19027 0.87083 0.97385 0.97626 1.21133 0.92663 1.50042 0.92203 0.92734 1.25004 0.96953 0.95166 0.97168 1.69945 1.03009 1.49667 1.30767 0.86633 0.77631 0.78671 0.84951 1.20185 1.21197 1.20196 0.90398 0.90688 0.91321 0.84789 0.84691 0.84534 0.89284 0.88831 0.92657 0.92604 0.96199 0.96290 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.93 36.01 0.36 -0.53 16 2 C -0.02 -0.17 5.88 -104.62 -0.62 -0.78 16 3 C -0.13 -1.17 9.74 -39.54 -0.39 -1.55 16 4 C -0.08 -0.73 9.98 -39.77 -0.40 -1.12 16 5 C -0.12 -1.48 9.47 -39.06 -0.37 -1.85 16 6 C 0.15 2.11 6.59 -83.66 -0.55 1.56 16 7 C -0.15 -1.98 6.35 -39.06 -0.25 -2.23 16 8 S -0.04 -0.51 22.67 -107.50 -2.44 -2.95 16 9 C 0.52 9.08 8.45 53.56 0.45 9.53 16 10 O -0.46 -9.20 17.45 5.17 0.09 -9.11 16 11 N -0.53 -8.65 2.63 -116.97 -0.31 -8.96 16 12 C 0.10 1.67 5.31 -4.04 -0.02 1.65 16 13 C -0.12 -2.55 5.48 -26.73 -0.15 -2.69 16 14 C 0.03 0.67 4.97 -27.89 -0.14 0.53 16 15 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 16 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 19 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.41 8.09 -51.92 -0.42 -0.01 16 25 H 0.07 0.54 7.73 -51.93 -0.40 0.14 16 26 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 27 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 28 H 0.14 1.61 7.07 -52.49 -0.37 1.23 16 29 H 0.09 1.35 6.92 -51.93 -0.36 0.99 16 30 H 0.09 1.67 7.73 -51.93 -0.40 1.27 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 314.03 15.07 4.73 4.73 Total: -1.00 -31.79 314.03 -9.14 -40.92 By element: Atomic # 1 Polarization: 0.04 SS G_CDS: -4.45 Total: -4.41 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -2.47 Total: -10.99 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.43 Total: -34.86 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -0.51 SS G_CDS: -2.44 Total: -2.95 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.79 -9.14 -40.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592353610.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.823 kcal (2) G-P(sol) polarization free energy of solvation -31.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds