Wall clock time and date at job start Mon Mar 30 2020 01:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38176 * 120.03949 * 2 1 4 4 C 1.38411 * 119.43744 * 179.97438 * 3 2 1 5 5 C 1.37549 * 120.83133 * 359.97438 * 4 3 2 6 6 C 1.40297 * 120.74453 * 0.02562 * 5 4 3 7 7 C 1.38297 * 120.04060 * 179.97438 * 2 1 3 8 8 S 1.76891 * 132.38363 * 0.02662 * 7 2 1 9 9 C 1.77148 * 94.69320 * 179.81812 * 8 7 2 10 10 O 1.21717 * 126.94447 * 180.24080 * 9 8 7 11 11 N 1.33657 * 106.11298 * 0.31532 * 9 8 7 12 12 C 1.46504 * 120.67624 * 179.88740 * 11 9 8 13 13 C 1.53006 * 109.46883 * 269.71952 * 12 11 9 14 14 C 1.52997 * 109.47127 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47242 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99967 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00542 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99408 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00405 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47155 * 60.00002 * 19 17 15 21 21 H 1.48503 * 109.47086 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46879 * 300.00005 * 19 17 15 23 23 H 1.08996 * 109.47685 * 270.02292 * 1 2 3 24 24 H 1.09009 * 109.47057 * 30.02610 * 1 2 3 25 25 H 1.09002 * 109.47059 * 150.02333 * 1 2 3 26 26 H 1.07998 * 120.28177 * 359.97438 * 3 2 1 27 27 H 1.07993 * 119.58207 * 180.02562 * 4 3 2 28 28 H 1.07997 * 119.62668 * 180.02562 * 5 4 3 29 29 H 1.09001 * 109.46891 * 149.72387 * 12 11 9 30 30 H 1.08993 * 109.47378 * 29.71759 * 12 11 9 31 31 H 1.09001 * 109.46801 * 300.00349 * 13 12 11 32 32 H 1.09001 * 109.46998 * 59.99945 * 13 12 11 33 33 H 1.08996 * 109.46952 * 300.00302 * 14 13 12 34 34 H 1.09001 * 109.46832 * 60.00321 * 14 13 12 35 35 H 0.96999 * 119.99910 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1987 1.1962 0.0000 4 6 3.5827 1.1816 0.0005 5 6 4.2752 -0.0068 0.0016 6 6 3.5945 -1.2336 0.0016 7 6 2.1993 -1.1972 0.0005 8 16 1.6652 -2.8835 0.0007 9 6 3.3045 -3.5548 -0.0041 10 8 3.6129 -4.7323 -0.0099 11 7 4.1344 -2.5071 0.0015 12 6 5.5862 -2.7036 0.0021 13 6 6.0911 -2.7716 1.4449 14 6 7.6073 -2.9762 1.4455 15 6 8.1045 -3.0438 2.8665 16 1 7.4085 -2.9507 3.6871 17 6 9.4478 -3.2246 3.1191 18 7 10.2952 -3.3385 2.1198 19 14 10.0640 -3.3092 4.8805 20 1 9.4115 -4.4456 5.5791 21 1 11.5357 -3.5076 4.8811 22 1 9.7344 -2.0422 5.5815 23 1 -0.3634 0.0004 1.0276 24 1 -0.3634 0.8898 -0.5143 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6640 2.1345 -0.0004 27 1 4.1257 2.1151 0.0010 28 1 5.3551 0.0045 0.0024 29 1 6.0658 -1.8704 -0.5117 30 1 5.8271 -3.6343 -0.5114 31 1 5.8501 -1.8409 1.9584 32 1 5.6115 -3.6048 1.9587 33 1 7.8486 -3.9067 0.9318 34 1 8.0865 -2.1427 0.9318 35 1 11.2402 -3.4660 2.2974 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592353610.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:07 Heat of formation + Delta-G solvation = -31.797287 kcal Electronic energy + Delta-G solvation = -18558.399640 eV Core-core repulsion = 15646.322241 eV Total energy + Delta-G solvation = -2912.077399 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.11881 -39.95177 -37.75811 -36.01841 -33.95521 -33.58557 -31.15000 -29.31904 -27.86747 -26.10668 -24.74496 -22.83631 -22.71355 -21.74046 -19.68719 -18.65250 -18.25735 -17.59824 -17.24714 -16.73264 -16.49750 -15.97853 -15.79119 -15.09503 -14.89198 -14.58496 -14.52949 -14.18932 -13.60426 -13.50683 -13.33774 -12.96582 -12.91954 -12.72342 -12.67123 -12.49188 -11.93342 -11.77975 -11.75435 -11.52666 -11.31513 -11.17862 -10.95711 -10.59515 -9.23003 -9.04203 -8.24358 -6.35737 -0.31755 -0.10082 0.12756 0.56915 0.95981 1.37785 1.40720 1.48695 1.62922 2.38133 2.58599 3.09019 3.33027 3.73021 3.83669 4.02786 4.08608 4.19637 4.26219 4.33503 4.50938 4.59592 4.69187 4.79657 4.84039 4.92097 5.00660 5.12349 5.24153 5.34466 5.41421 5.47744 5.55195 5.64403 5.75954 5.90759 6.12649 6.19364 6.78278 7.33406 8.87069 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.023251 B = 0.004275 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.965682 B = 6548.125220 C = 7182.909264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.019 4.019 3 C -0.116 4.116 4 C -0.068 4.068 5 C -0.134 4.134 6 C 0.112 3.888 7 C -0.167 4.167 8 S -0.002 6.002 9 C 0.500 3.500 10 O -0.506 6.506 11 N -0.532 5.532 12 C 0.108 3.892 13 C -0.103 4.103 14 C 0.032 3.968 15 C -0.548 4.548 16 H 0.054 0.946 17 C 0.005 3.995 18 N -0.929 5.929 19 Si 0.963 3.037 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.264 1.264 23 H 0.087 0.913 24 H 0.103 0.897 25 H 0.061 0.939 26 H 0.176 0.824 27 H 0.168 0.832 28 H 0.134 0.866 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.034 0.966 33 H -0.008 1.008 34 H 0.011 0.989 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.862 13.557 -6.189 24.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.024 4.024 3 C -0.136 4.136 4 C -0.088 4.088 5 C -0.156 4.156 6 C 0.009 3.991 7 C -0.283 4.283 8 S 0.241 5.759 9 C 0.182 3.818 10 O -0.387 6.387 11 N -0.253 5.253 12 C -0.016 4.016 13 C -0.142 4.142 14 C -0.006 4.006 15 C -0.586 4.586 16 H 0.073 0.927 17 C -0.193 4.193 18 N -0.568 5.568 19 Si 0.787 3.213 20 H -0.198 1.198 21 H -0.204 1.204 22 H -0.188 1.188 23 H 0.105 0.895 24 H 0.122 0.878 25 H 0.080 0.920 26 H 0.193 0.807 27 H 0.185 0.815 28 H 0.152 0.848 29 H 0.129 0.871 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.010 0.990 34 H 0.029 0.971 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.692 12.080 -6.245 24.760 hybrid contribution 2.202 -0.338 0.766 2.355 sum -18.490 11.742 -5.479 22.578 Atomic orbital electron populations 1.20940 0.88217 1.04319 1.03904 1.19407 0.97515 0.89215 0.96272 1.21489 0.93875 0.97757 1.00488 1.21317 0.94869 0.97465 0.95181 1.20898 1.00925 0.89135 1.04654 1.18272 0.92524 0.85217 1.03051 1.21766 0.93678 0.96752 1.16133 1.85443 1.07136 0.98929 1.84395 1.22369 0.91182 0.87356 0.80919 1.90905 1.78151 1.15374 1.54246 1.45939 1.09288 1.04619 1.65414 1.21998 0.76288 1.04244 0.99096 1.21697 0.97569 1.00611 0.94284 1.18886 0.90075 0.95538 0.96109 1.21555 0.93265 1.50334 0.93419 0.92750 1.25915 0.97121 0.94512 1.01792 1.70065 1.03411 1.50277 1.33097 0.85531 0.77189 0.79136 0.79399 1.19768 1.20437 1.18827 0.89479 0.87849 0.92030 0.80685 0.81450 0.84800 0.87082 0.90219 0.91939 0.94739 0.98961 0.97109 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 9.93 71.24 0.71 -0.61 16 2 C -0.02 -0.33 5.88 -19.87 -0.12 -0.44 16 3 C -0.12 -1.47 9.74 22.30 0.22 -1.25 16 4 C -0.07 -1.03 9.98 22.15 0.22 -0.81 16 5 C -0.13 -3.03 9.47 22.61 0.21 -2.81 16 6 C 0.11 3.12 6.59 38.94 0.26 3.38 16 7 C -0.17 -4.11 6.35 22.60 0.14 -3.96 16 8 S 0.00 -0.06 22.67 -56.49 -1.28 -1.34 16 9 C 0.50 18.22 8.45 129.97 1.10 19.32 16 10 O -0.51 -21.89 17.45 -4.40 -0.08 -21.97 16 11 N -0.53 -17.92 2.63 -642.80 -1.69 -19.61 16 12 C 0.11 3.90 5.31 86.38 0.46 4.36 16 13 C -0.10 -4.45 5.48 30.60 0.17 -4.28 16 14 C 0.03 1.67 4.97 29.85 0.15 1.82 16 15 C -0.55 -31.66 9.11 25.60 0.23 -31.43 16 16 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 17 C 0.01 0.29 5.46 84.65 0.46 0.75 16 18 N -0.93 -56.25 13.29 21.45 0.28 -55.97 16 19 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 20 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 22 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 23 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.10 0.60 8.09 -2.38 -0.02 0.59 16 25 H 0.06 0.80 7.73 -2.39 -0.02 0.78 16 26 H 0.18 0.86 8.06 -2.91 -0.02 0.84 16 27 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 28 H 0.13 3.01 7.07 -2.91 -0.02 2.99 16 29 H 0.11 3.45 6.92 -2.39 -0.02 3.43 16 30 H 0.08 3.08 7.73 -2.39 -0.02 3.06 16 31 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.03 1.60 8.14 -2.39 -0.02 1.59 16 33 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 34 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -71.64 314.03 4.56 -67.08 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: 1.09 Total: 1.20 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: 4.21 Total: -15.97 kcal Atomic # 7 Polarization: -74.17 SS G_CDS: -1.41 Total: -75.58 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.08 Total: -21.97 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -1.28 Total: -1.34 kcal Total: -71.64 4.56 -67.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592353610.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.278 kcal (2) G-P(sol) polarization free energy of solvation -71.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds