Wall clock time and date at job start Mon Mar 30 2020 02:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47097 * 2 1 4 4 C 1.50707 * 109.46692 * 240.00368 * 2 1 3 5 5 H 1.07997 * 120.00412 * 275.00321 * 4 2 1 6 6 C 1.37878 * 119.99902 * 95.00630 * 4 2 1 7 7 N 1.31508 * 120.00170 * 184.90962 * 6 4 2 8 8 Si 1.86807 * 119.99876 * 4.91088 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.83582 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.83208 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.83521 * 8 6 4 12 12 N 1.46495 * 109.46950 * 120.00931 * 2 1 3 13 13 C 1.34780 * 119.99388 * 274.99377 * 12 2 1 14 14 O 1.21617 * 120.00178 * 0.02562 * 13 12 2 15 15 C 1.47348 * 119.99644 * 180.02562 * 13 12 2 16 16 N 1.35218 * 126.55904 * 0.02774 * 15 13 12 17 17 C 1.29995 * 108.84036 * 179.97438 * 16 15 13 18 18 O 1.33991 * 109.70326 * 0.02562 * 17 16 15 19 19 C 1.34783 * 108.10487 * 359.75105 * 18 17 16 20 20 C 1.47760 * 126.76634 * 180.28234 * 19 18 17 21 21 C 1.42493 * 126.96796 * 0.13098 * 20 19 18 22 22 C 1.35177 * 103.92339 * 179.97438 * 21 20 19 23 23 O 1.34069 * 106.74687 * 0.02562 * 22 21 20 24 24 N 1.20914 * 111.89458 * 359.74013 * 23 22 21 25 25 H 1.09006 * 109.47034 * 55.03017 * 1 2 3 26 26 H 1.08993 * 109.47019 * 295.03459 * 1 2 3 27 27 H 1.09001 * 109.47478 * 175.02850 * 1 2 3 28 28 H 0.96999 * 120.00090 * 179.97438 * 7 6 4 29 29 H 0.97000 * 120.00171 * 94.99890 * 12 2 1 30 30 H 1.08004 * 125.14728 * 180.02562 * 17 16 15 31 31 H 1.08000 * 128.03804 * 359.92398 * 21 20 19 32 32 H 1.08006 * 126.63060 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.1354 -1.7854 -1.2293 6 6 2.3603 0.0122 -2.3581 7 7 2.7059 -0.6129 -3.4623 8 14 2.3136 1.8793 -2.3173 9 1 3.5992 2.3949 -1.7820 10 1 2.1059 2.3994 -3.6926 11 1 1.1987 2.3276 -1.4448 12 7 2.0183 -0.6908 1.1960 13 6 2.1471 -0.0185 2.3570 14 8 1.8575 1.1615 2.4118 15 6 2.6387 -0.7131 3.5599 16 7 2.9973 -2.0138 3.6488 17 6 3.3783 -2.2619 4.8667 18 8 3.2828 -1.1483 5.6057 19 6 2.8267 -0.1578 4.8135 20 6 2.5751 1.2442 5.2065 21 6 2.7677 1.8206 6.4953 22 6 2.3991 3.1110 6.3330 23 8 2.0276 3.2484 5.0521 24 7 2.1334 2.2120 4.4383 25 1 -0.3633 0.5890 -0.8422 26 1 -0.3633 0.4348 0.9311 27 1 -0.3634 -1.0238 -0.0891 28 1 2.9363 -0.1045 -4.2556 29 1 2.2490 -1.6319 1.1524 30 1 3.7200 -3.2206 5.2282 31 1 3.1244 1.3383 7.3934 32 1 2.4023 3.8821 7.0891 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596998521.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:40 Heat of formation + Delta-G solvation = 68.567642 kcal Electronic energy + Delta-G solvation = -21052.634918 eV Core-core repulsion = 17598.616454 eV Total energy + Delta-G solvation = -3454.018464 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.00447 -43.40576 -38.75391 -34.99577 -34.97194 -34.34997 -32.26711 -31.87391 -30.24919 -29.39387 -25.30618 -24.80570 -23.94608 -22.61091 -21.82679 -20.49886 -19.54527 -18.73136 -17.86215 -17.69596 -16.78197 -16.66996 -16.03052 -15.45652 -15.27193 -14.51364 -14.03208 -13.96614 -13.63533 -13.24510 -13.03850 -12.46549 -12.33745 -11.60868 -11.43172 -11.32758 -11.08913 -11.02085 -10.84317 -10.73863 -10.51309 -9.85900 -9.82847 -9.28299 -9.14690 -8.70361 -8.64868 -7.97693 -6.18260 -4.21536 0.58521 1.49237 2.11843 2.12705 2.48160 3.17110 3.30951 3.38289 3.46631 3.72002 3.87553 4.00686 4.13901 4.37511 4.39769 4.91836 5.00825 5.10828 5.17473 5.28729 5.48093 5.64861 5.73202 6.05755 6.40393 6.59080 6.73314 6.98034 7.23462 7.33929 7.47581 7.59529 8.20182 8.20791 8.63756 8.82993 9.00937 9.43718 10.93519 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.020675 B = 0.005565 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.946687 B = 5030.479478 C = 5993.964724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.232 3.768 3 H 0.051 0.949 4 C -0.528 4.528 5 H 0.080 0.920 6 C 0.082 3.918 7 N -0.889 5.889 8 Si 0.873 3.127 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.259 1.259 12 N -0.684 5.684 13 C 0.568 3.432 14 O -0.516 6.516 15 C -0.011 4.011 16 N -0.456 5.456 17 C 0.183 3.817 18 O -0.191 6.191 19 C 0.077 3.923 20 C 0.056 3.944 21 C -0.213 4.213 22 C -0.070 4.070 23 O 0.126 5.874 24 N -0.255 5.255 25 H 0.053 0.947 26 H 0.029 0.971 27 H 0.047 0.953 28 H 0.267 0.733 29 H 0.400 0.600 30 H 0.260 0.740 31 H 0.175 0.825 32 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.104 2.055 22.632 22.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.130 3.870 3 H 0.069 0.931 4 C -0.566 4.566 5 H 0.098 0.902 6 C -0.123 4.123 7 N -0.526 5.526 8 Si 0.700 3.300 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.183 1.183 12 N -0.333 5.333 13 C 0.351 3.649 14 O -0.392 6.392 15 C -0.135 4.135 16 N -0.185 5.185 17 C -0.045 4.045 18 O -0.076 6.076 19 C 0.020 3.980 20 C -0.100 4.100 21 C -0.235 4.235 22 C -0.150 4.150 23 O 0.045 5.955 24 N 0.050 4.950 25 H 0.072 0.928 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.235 0.765 30 H 0.276 0.724 31 H 0.192 0.808 32 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 0.591 2.493 20.631 20.789 hybrid contribution 0.631 0.314 1.401 1.569 sum 1.222 2.808 22.032 22.244 Atomic orbital electron populations 1.22209 0.98424 1.00628 0.99287 1.19185 0.91033 0.94335 0.82474 0.93077 1.21013 1.45093 0.95728 0.94782 0.90226 1.24929 0.93599 0.98606 0.95136 1.69881 1.44851 1.36155 1.01675 0.86906 0.79888 0.85896 0.77318 1.19882 1.21177 1.18338 1.46509 1.63544 1.14300 1.08902 1.16948 0.79679 0.86395 0.81915 1.90909 1.50539 1.13873 1.83836 1.22474 1.05697 0.89973 0.95405 1.70538 1.13953 1.14500 1.19502 1.28152 1.00306 0.90886 0.85146 1.84337 1.64411 1.18457 1.40406 1.19692 1.02741 0.86941 0.88589 1.20177 1.07445 0.90727 0.91643 1.22756 1.07752 0.94464 0.98522 1.25953 1.01801 0.98975 0.88284 1.85073 1.61348 1.29615 1.19460 1.75214 1.12327 0.91426 1.16016 0.92798 0.95190 0.93379 0.92274 0.76516 0.72436 0.80772 0.76477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.47 37.16 0.35 -3.05 16 2 C 0.23 5.86 2.22 -69.08 -0.15 5.71 16 3 H 0.05 1.39 4.73 -51.93 -0.25 1.15 16 4 C -0.53 -14.84 9.05 -34.44 -0.31 -15.15 16 5 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 6 C 0.08 2.35 5.47 -17.82 -0.10 2.26 16 7 N -0.89 -26.84 13.96 55.43 0.77 -26.06 16 8 Si 0.87 22.25 26.99 -169.99 -4.59 17.67 16 9 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.26 -6.50 6.82 56.52 0.39 -6.11 16 12 N -0.68 -15.57 5.07 -56.03 -0.28 -15.85 16 13 C 0.57 12.58 7.78 -12.55 -0.10 12.48 16 14 O -0.52 -12.53 13.07 5.26 0.07 -12.46 16 15 C -0.01 -0.20 7.05 -82.61 -0.58 -0.78 16 16 N -0.46 -7.15 11.00 -11.16 -0.12 -7.27 16 17 C 0.18 1.97 13.16 51.98 0.68 2.66 16 18 O -0.19 -2.36 10.75 5.21 0.06 -2.31 16 19 C 0.08 1.24 7.37 -35.64 -0.26 0.98 16 20 C 0.06 0.87 7.12 -82.60 -0.59 0.28 16 21 C -0.21 -2.22 11.15 -39.03 -0.44 -2.65 16 22 C -0.07 -0.61 12.27 29.64 0.36 -0.25 16 23 O 0.13 1.72 11.18 17.10 0.19 1.91 16 24 N -0.26 -4.52 8.71 33.27 0.29 -4.23 16 25 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 26 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.40 8.57 8.32 -40.82 -0.34 8.23 16 30 H 0.26 1.15 8.06 -52.48 -0.42 0.73 16 31 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.22 0.71 8.06 -52.48 -0.42 0.29 16 LS Contribution 291.87 15.07 4.40 4.40 Total: -1.00 -36.00 291.87 -3.04 -39.04 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -2.70 Total: 2.68 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -1.13 Total: 2.49 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.66 Total: -53.42 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.32 Total: -12.86 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.59 Total: 17.67 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -36.00 -3.04 -39.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596998521.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.609 kcal (2) G-P(sol) polarization free energy of solvation -35.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds