Wall clock time and date at job start Mon Mar 30 2020 02:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47097 * 2 1 4 4 C 1.50707 * 109.46692 * 240.00368 * 2 1 3 5 5 H 1.07997 * 120.00412 * 275.00321 * 4 2 1 6 6 C 1.37878 * 119.99902 * 95.00630 * 4 2 1 7 7 N 1.31508 * 120.00170 * 184.90962 * 6 4 2 8 8 Si 1.86807 * 119.99876 * 4.91088 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.83582 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.83208 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.83521 * 8 6 4 12 12 N 1.46495 * 109.46950 * 120.00931 * 2 1 3 13 13 C 1.34780 * 119.99388 * 274.99377 * 12 2 1 14 14 O 1.21617 * 120.00178 * 0.02562 * 13 12 2 15 15 C 1.47348 * 119.99644 * 180.02562 * 13 12 2 16 16 N 1.35218 * 126.55904 * 0.02774 * 15 13 12 17 17 C 1.29995 * 108.84036 * 179.97438 * 16 15 13 18 18 O 1.33991 * 109.70326 * 0.02562 * 17 16 15 19 19 C 1.34783 * 108.10487 * 359.75105 * 18 17 16 20 20 C 1.47760 * 126.76634 * 180.28234 * 19 18 17 21 21 C 1.42493 * 126.96796 * 0.13098 * 20 19 18 22 22 C 1.35177 * 103.92339 * 179.97438 * 21 20 19 23 23 O 1.34069 * 106.74687 * 0.02562 * 22 21 20 24 24 N 1.20914 * 111.89458 * 359.74013 * 23 22 21 25 25 H 1.09006 * 109.47034 * 55.03017 * 1 2 3 26 26 H 1.08993 * 109.47019 * 295.03459 * 1 2 3 27 27 H 1.09001 * 109.47478 * 175.02850 * 1 2 3 28 28 H 0.96999 * 120.00090 * 179.97438 * 7 6 4 29 29 H 0.97000 * 120.00171 * 94.99890 * 12 2 1 30 30 H 1.08004 * 125.14728 * 180.02562 * 17 16 15 31 31 H 1.08000 * 128.03804 * 359.92398 * 21 20 19 32 32 H 1.08006 * 126.63060 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.1354 -1.7854 -1.2293 6 6 2.3603 0.0122 -2.3581 7 7 2.7059 -0.6129 -3.4623 8 14 2.3136 1.8793 -2.3173 9 1 3.5992 2.3949 -1.7820 10 1 2.1059 2.3994 -3.6926 11 1 1.1987 2.3276 -1.4448 12 7 2.0183 -0.6908 1.1960 13 6 2.1471 -0.0185 2.3570 14 8 1.8575 1.1615 2.4118 15 6 2.6387 -0.7131 3.5599 16 7 2.9973 -2.0138 3.6488 17 6 3.3783 -2.2619 4.8667 18 8 3.2828 -1.1483 5.6057 19 6 2.8267 -0.1578 4.8135 20 6 2.5751 1.2442 5.2065 21 6 2.7677 1.8206 6.4953 22 6 2.3991 3.1110 6.3330 23 8 2.0276 3.2484 5.0521 24 7 2.1334 2.2120 4.4383 25 1 -0.3633 0.5890 -0.8422 26 1 -0.3633 0.4348 0.9311 27 1 -0.3634 -1.0238 -0.0891 28 1 2.9363 -0.1045 -4.2556 29 1 2.2490 -1.6319 1.1524 30 1 3.7200 -3.2206 5.2282 31 1 3.1244 1.3383 7.3934 32 1 2.4023 3.8821 7.0891 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596998521.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:39 Heat of formation + Delta-G solvation = 38.274751 kcal Electronic energy + Delta-G solvation = -21053.948516 eV Core-core repulsion = 17598.616454 eV Total energy + Delta-G solvation = -3455.332062 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -46.01145 -44.47990 -40.47843 -36.81559 -36.12536 -35.44521 -34.38007 -32.79319 -31.86865 -30.82844 -27.39319 -26.16676 -24.97396 -23.64218 -23.13198 -21.91846 -21.25990 -20.02236 -19.21326 -18.75175 -18.29470 -17.84853 -17.30995 -17.29343 -16.46185 -15.85362 -15.77540 -15.46987 -14.87508 -14.57847 -14.53524 -14.30135 -14.07665 -13.38008 -13.08802 -12.84621 -12.61423 -12.53022 -12.34367 -12.15323 -11.91601 -11.89449 -11.29282 -11.01193 -10.86484 -10.68120 -10.00091 -9.68684 -8.42470 -6.49306 -0.56560 0.73896 1.02593 1.08680 1.26734 1.30324 1.41313 1.42447 2.21689 2.24707 2.32258 2.47855 2.94821 3.09737 3.13450 3.39267 3.74856 4.01731 4.16439 4.36584 4.39099 4.50015 4.67672 4.73596 4.76299 4.99425 5.05598 5.08508 5.30927 5.39793 5.65628 6.05492 6.30921 6.54209 6.81377 7.14854 7.27782 7.35975 8.72796 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.020675 B = 0.005565 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.946687 B = 5030.479478 C = 5993.964724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.237 3.763 3 H 0.033 0.967 4 C -0.529 4.529 5 H 0.054 0.946 6 C 0.036 3.964 7 N -0.928 5.928 8 Si 0.928 3.072 9 H -0.277 1.277 10 H -0.271 1.271 11 H -0.255 1.255 12 N -0.690 5.690 13 C 0.564 3.436 14 O -0.542 6.542 15 C -0.052 4.052 16 N -0.496 5.496 17 C 0.221 3.779 18 O -0.175 6.175 19 C 0.085 3.915 20 C 0.021 3.979 21 C -0.209 4.209 22 C -0.045 4.045 23 O 0.118 5.882 24 N -0.318 5.318 25 H 0.054 0.946 26 H 0.035 0.965 27 H 0.055 0.945 28 H 0.272 0.728 29 H 0.404 0.596 30 H 0.323 0.677 31 H 0.209 0.791 32 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.526 2.534 25.974 26.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.133 3.867 3 H 0.050 0.950 4 C -0.567 4.567 5 H 0.072 0.928 6 C -0.165 4.165 7 N -0.566 5.566 8 Si 0.752 3.248 9 H -0.202 1.202 10 H -0.196 1.196 11 H -0.179 1.179 12 N -0.339 5.339 13 C 0.349 3.651 14 O -0.419 6.419 15 C -0.175 4.175 16 N -0.223 5.223 17 C -0.007 4.007 18 O -0.061 6.061 19 C 0.027 3.973 20 C -0.134 4.134 21 C -0.231 4.231 22 C -0.124 4.124 23 O 0.037 5.963 24 N -0.013 5.013 25 H 0.073 0.927 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.240 0.760 30 H 0.337 0.663 31 H 0.226 0.774 32 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 1.007 2.950 23.972 24.173 hybrid contribution 0.554 0.098 0.572 0.803 sum 1.561 3.048 24.544 24.782 Atomic orbital electron populations 1.22086 0.96827 1.01223 0.99555 1.18956 0.92174 0.93058 0.82479 0.94952 1.21140 1.44793 0.94706 0.96057 0.92827 1.25594 0.93498 1.02586 0.94818 1.69970 1.46339 1.37839 1.02428 0.86043 0.79686 0.81109 0.77953 1.20244 1.19580 1.17918 1.46277 1.64404 1.14411 1.08793 1.17355 0.78850 0.86240 0.82614 1.90887 1.51456 1.15052 1.84549 1.21903 1.09067 0.91615 0.94909 1.70471 1.16272 1.13360 1.22225 1.29560 0.96019 0.91666 0.83412 1.84395 1.63926 1.18157 1.39623 1.19832 1.01455 0.87899 0.88113 1.20629 1.08470 0.90445 0.93811 1.23182 1.07598 0.94745 0.97576 1.27038 0.98571 0.99860 0.86965 1.84988 1.61216 1.28472 1.21601 1.75215 1.14800 0.92883 1.18427 0.92745 0.94637 0.92563 0.91841 0.76044 0.66283 0.77376 0.70810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.47 9.47 71.98 0.68 -5.79 16 2 C 0.24 12.27 2.22 44.25 0.10 12.37 16 3 H 0.03 1.81 4.73 -2.39 -0.01 1.80 16 4 C -0.53 -30.59 9.05 25.60 0.23 -30.36 16 5 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 6 C 0.04 2.10 5.47 84.66 0.46 2.57 16 7 N -0.93 -57.09 13.96 21.45 0.30 -56.79 16 8 Si 0.93 46.59 26.99 68.60 1.85 48.45 16 9 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 10 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 11 H -0.26 -12.56 6.82 99.48 0.68 -11.88 16 12 N -0.69 -32.47 5.07 -449.44 -2.28 -34.75 16 13 C 0.56 25.83 7.78 86.64 0.67 26.50 16 14 O -0.54 -27.30 13.07 -4.08 -0.05 -27.35 16 15 C -0.05 -1.94 7.05 41.06 0.29 -1.65 16 16 N -0.50 -15.01 11.00 -304.12 -3.35 -18.36 16 17 C 0.22 4.03 13.16 130.51 1.72 5.75 16 18 O -0.18 -3.84 10.75 -4.26 -0.05 -3.89 16 19 C 0.08 2.66 7.37 24.83 0.18 2.85 16 20 C 0.02 0.62 7.12 42.82 0.30 0.93 16 21 C -0.21 -3.71 11.15 22.62 0.25 -3.46 16 22 C -0.04 -0.63 12.27 67.11 0.82 0.19 16 23 O 0.12 3.11 11.18 71.37 0.80 3.91 16 24 N -0.32 -11.36 8.71 -49.48 -0.43 -11.79 16 25 H 0.05 2.50 8.14 -2.38 -0.02 2.48 16 26 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 29 H 0.40 18.05 8.32 -92.71 -0.77 17.28 16 30 H 0.32 1.01 8.06 -2.91 -0.02 0.99 16 31 H 0.21 2.04 8.06 -2.91 -0.02 2.01 16 32 H 0.28 0.23 8.06 -2.91 -0.02 0.20 16 Total: -1.00 -83.90 291.87 2.90 -81.00 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.39 Total: 9.70 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 5.72 Total: 9.88 kcal Atomic # 7 Polarization: -115.94 SS G_CDS: -5.75 Total: -121.69 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: 0.70 Total: -27.33 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 1.85 Total: 48.45 kcal Total: -83.90 2.90 -81.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596998521.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.273 kcal (2) G-P(sol) polarization free energy of solvation -83.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds