Wall clock time and date at job start Mon Mar 30 2020 01:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86808 * 119.99508 * 2 1 4 4 H 1.48498 * 109.46816 * 239.99892 * 3 2 1 5 5 H 1.48502 * 109.46977 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47022 * 119.99598 * 3 2 1 7 7 C 1.37870 * 120.00589 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00159 * 169.58510 * 7 2 1 9 9 C 1.50702 * 119.99876 * 349.58147 * 7 2 1 10 10 C 1.52998 * 115.55060 * 324.23672 * 9 7 2 11 11 N 1.46498 * 109.47095 * 306.81777 * 10 9 7 12 12 C 1.34783 * 120.00198 * 174.97670 * 11 10 9 13 13 O 1.21786 * 119.99808 * 5.02915 * 12 11 10 14 14 C 1.41467 * 119.99802 * 185.03490 * 12 11 10 15 15 C 1.35655 * 119.99734 * 174.61310 * 14 12 11 16 16 C 1.41581 * 120.00180 * 179.97438 * 15 14 12 17 17 C 1.37040 * 125.47886 * 179.71621 * 16 15 14 18 18 C 1.37439 * 113.22467 * 179.83702 * 17 16 15 19 19 C 1.33859 * 115.12373 * 0.45843 * 18 17 16 20 20 S 1.70602 * 111.01820 * 359.74723 * 19 18 17 21 21 C 1.52998 * 117.49730 * 109.90320 * 9 7 2 22 22 C 1.52999 * 117.49986 * 178.56301 * 9 7 2 23 23 H 0.96996 * 120.00109 * 5.04370 * 1 2 3 24 24 H 1.09000 * 109.46911 * 186.81942 * 10 9 7 25 25 H 1.09000 * 109.47738 * 66.81813 * 10 9 7 26 26 H 0.96998 * 120.00037 * 354.97326 * 11 10 9 27 27 H 1.07997 * 120.00817 * 354.61529 * 14 12 11 28 28 H 1.07996 * 120.00046 * 359.97438 * 15 14 12 29 29 H 1.08006 * 123.38581 * 0.02562 * 17 16 15 30 30 H 1.07995 * 122.43416 * 180.20801 * 18 17 16 31 31 H 1.08003 * 124.48715 * 179.71140 * 19 18 17 32 32 H 1.09005 * 117.50228 * 215.00411 * 21 9 7 33 33 H 1.08997 * 117.49892 * 0.02562 * 21 9 7 34 34 H 1.09000 * 117.49937 * 359.97438 * 22 9 7 35 35 H 1.08999 * 117.49784 * 144.97768 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0047 -1.1939 0.0005 8 1 3.0713 -1.2016 -0.1685 9 6 1.2699 -2.4882 0.2371 10 6 0.1124 -2.4171 1.2351 11 7 0.5865 -1.8322 2.4919 12 6 -0.2853 -1.5766 3.4875 13 8 -1.4501 -1.9153 3.3787 14 6 0.1526 -0.9150 4.6587 15 6 -0.7441 -0.5602 5.6127 16 6 -0.3058 0.1016 6.7852 17 6 -1.1116 0.5141 7.8141 18 6 -0.4204 1.1280 8.8311 19 6 0.9012 1.2257 8.6419 20 16 1.3589 0.5331 7.1516 21 6 1.1225 -3.4438 -0.9486 22 6 2.0854 -3.7820 0.1922 23 1 -0.4850 0.8368 -0.0738 24 1 -0.2681 -3.4212 1.4224 25 1 -0.6845 -1.7974 0.8239 26 1 1.5279 -1.6289 2.6075 27 1 1.2008 -0.6922 4.7933 28 1 -1.7923 -0.7825 5.4780 29 1 -2.1817 0.3685 7.8260 30 1 -0.9086 1.5076 9.7164 31 1 1.5867 1.6831 9.3401 32 1 0.2009 -4.0218 -1.0177 33 1 1.5573 -3.1365 -1.8997 34 1 3.1533 -3.6970 -0.0089 35 1 1.7976 -4.5823 0.8740 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701164486.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:13 Heat of formation + Delta-G solvation = 19.342458 kcal Electronic energy + Delta-G solvation = -18408.090690 eV Core-core repulsion = 15498.230877 eV Total energy + Delta-G solvation = -2909.859813 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.71488 -38.94986 -38.44540 -34.98452 -34.76011 -34.11971 -30.17790 -27.98591 -27.31360 -25.52787 -23.17324 -22.85407 -21.19175 -20.85890 -20.33270 -18.49163 -18.19667 -17.51960 -16.73451 -16.49125 -16.34107 -15.92894 -15.43742 -14.86137 -14.37921 -14.30109 -14.22622 -13.59936 -13.52698 -13.45164 -13.42324 -12.84117 -12.83214 -12.66241 -12.31924 -12.04237 -11.69469 -11.46262 -11.42697 -11.07245 -10.83827 -10.61458 -10.10446 -9.70686 -9.53223 -9.00016 -8.01676 -6.17834 -0.79660 0.60107 0.84902 1.07328 1.42991 1.45752 1.52159 1.85902 2.41734 2.50805 2.72944 3.09075 3.65760 3.93291 4.06667 4.19664 4.26693 4.36403 4.48186 4.54480 4.61779 4.75492 4.81061 4.93506 4.97116 5.10837 5.18396 5.20593 5.30572 5.42446 5.52287 5.53273 5.60420 5.86008 5.93705 6.38545 6.78957 6.95821 7.45745 7.51118 8.93301 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.019416 B = 0.004692 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.744869 B = 5966.216853 C = 6674.830375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.039 3.961 3 Si 0.943 3.057 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.262 1.262 7 C -0.508 4.508 8 H 0.060 0.940 9 C 0.010 3.990 10 C 0.173 3.827 11 N -0.682 5.682 12 C 0.537 3.463 13 O -0.611 6.611 14 C -0.231 4.231 15 C 0.027 3.973 16 C -0.228 4.228 17 C -0.093 4.093 18 C -0.153 4.153 19 C -0.236 4.236 20 S 0.191 5.809 21 C -0.199 4.199 22 C -0.184 4.184 23 H 0.258 0.742 24 H 0.021 0.979 25 H 0.073 0.927 26 H 0.405 0.595 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.163 0.837 30 H 0.168 0.832 31 H 0.192 0.808 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.094 2.702 17.479 17.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.163 4.163 3 Si 0.769 3.231 4 H -0.199 1.199 5 H -0.220 1.220 6 H -0.186 1.186 7 C -0.545 4.545 8 H 0.078 0.922 9 C 0.009 3.991 10 C 0.049 3.951 11 N -0.328 5.328 12 C 0.328 3.672 13 O -0.498 6.498 14 C -0.254 4.254 15 C 0.005 3.995 16 C -0.345 4.345 17 C -0.125 4.125 18 C -0.184 4.184 19 C -0.373 4.373 20 S 0.459 5.541 21 C -0.238 4.238 22 C -0.222 4.222 23 H 0.067 0.933 24 H 0.040 0.960 25 H 0.091 0.909 26 H 0.240 0.760 27 H 0.154 0.846 28 H 0.153 0.847 29 H 0.180 0.820 30 H 0.185 0.815 31 H 0.209 0.791 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.574 2.445 16.703 17.255 hybrid contribution -0.752 1.048 0.181 1.302 sum 2.822 3.492 16.884 17.471 Atomic orbital electron populations 1.70016 1.07201 1.27113 1.48752 1.25558 0.95166 1.01655 0.93939 0.85848 0.78522 0.79548 0.79223 1.19939 1.21991 1.18630 1.20641 0.93876 0.89848 1.50148 0.92172 1.19232 0.95180 0.89723 0.94922 1.20655 0.97538 0.94243 0.82642 1.45636 1.11253 1.61588 1.14346 1.17348 0.85369 0.79728 0.84723 1.90719 1.19585 1.56580 1.82889 1.21961 1.01139 1.06746 0.95586 1.20674 1.00007 0.89640 0.89175 1.22694 0.98565 1.12317 1.00915 1.21333 1.01805 0.97281 0.92072 1.20283 0.93392 1.03109 1.01566 1.25707 1.01151 1.07505 1.02918 1.83305 1.06019 1.51727 1.13042 1.22924 1.00201 1.06342 0.94299 1.22962 0.96899 1.00253 1.02045 0.93268 0.96039 0.90922 0.76030 0.84597 0.84696 0.81985 0.81493 0.79056 0.90796 0.90610 0.89593 0.89671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.78 10.79 21.45 0.23 -49.55 16 2 C 0.04 2.01 5.14 84.65 0.44 2.45 16 3 Si 0.94 41.30 29.55 68.60 2.03 43.33 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 7 C -0.51 -25.84 8.37 25.60 0.21 -25.62 16 8 H 0.06 3.01 7.84 -2.91 -0.02 2.99 16 9 C 0.01 0.48 1.96 -52.93 -0.10 0.38 16 10 C 0.17 8.52 4.76 86.38 0.41 8.93 16 11 N -0.68 -30.34 5.21 -472.25 -2.46 -32.80 16 12 C 0.54 23.54 7.54 85.04 0.64 24.18 16 13 O -0.61 -31.01 16.13 -4.62 -0.07 -31.09 16 14 C -0.23 -8.00 9.30 22.47 0.21 -7.79 16 15 C 0.03 0.82 9.36 22.50 0.21 1.03 16 16 C -0.23 -5.61 6.21 22.81 0.14 -5.47 16 17 C -0.09 -1.82 10.25 21.80 0.22 -1.60 16 18 C -0.15 -2.41 10.15 21.08 0.21 -2.20 16 19 C -0.24 -3.68 10.92 66.82 0.73 -2.95 16 20 S 0.19 3.92 21.76 -56.49 -1.23 2.69 16 21 C -0.20 -8.73 9.96 30.62 0.30 -8.43 16 22 C -0.18 -7.42 9.92 30.62 0.30 -7.11 16 23 H 0.26 14.13 8.32 -92.71 -0.77 13.36 16 24 H 0.02 1.04 8.08 -2.39 -0.02 1.02 16 25 H 0.07 4.16 6.07 -2.39 -0.01 4.15 16 26 H 0.40 16.67 8.03 -92.71 -0.74 15.93 16 27 H 0.14 4.07 7.04 -2.91 -0.02 4.05 16 28 H 0.14 4.30 7.47 -2.91 -0.02 4.27 16 29 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 30 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 31 H 0.19 1.84 8.06 -2.91 -0.02 1.82 16 32 H 0.07 3.09 8.14 -2.38 -0.02 3.07 16 33 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 34 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 35 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -63.52 318.19 2.79 -60.73 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: 0.36 Total: 30.90 kcal Atomic # 6 Polarization: -28.14 SS G_CDS: 3.94 Total: -24.21 kcal Atomic # 7 Polarization: -80.13 SS G_CDS: -2.23 Total: -82.36 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.07 Total: -31.09 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Atomic # 16 Polarization: 3.92 SS G_CDS: -1.23 Total: 2.69 kcal Total: -63.52 2.79 -60.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701164486.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.072 kcal (2) G-P(sol) polarization free energy of solvation -63.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds