Wall clock time and date at job start Mon Mar 30 2020 01:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.33976 * 125.10415 * 2 1 4 4 C 1.34426 * 111.41061 * 179.97438 * 3 2 1 5 5 N 1.33039 * 134.04292 * 180.02562 * 4 3 2 6 6 C 1.31595 * 120.72498 * 180.02562 * 5 4 3 7 7 N 1.32026 * 122.67526 * 359.95538 * 6 5 4 8 8 C 1.32904 * 120.87772 * 0.02562 * 7 6 5 9 9 O 1.35472 * 120.82361 * 179.97438 * 8 7 6 10 10 C 1.39686 * 118.34435 * 359.97438 * 8 7 6 11 11 C 1.36068 * 125.10502 * 179.97438 * 2 1 3 12 12 C 1.47135 * 127.18436 * 0.02562 * 11 2 1 13 13 O 1.21647 * 119.99730 * 269.99596 * 12 11 2 14 14 N 1.34773 * 120.00273 * 89.99923 * 12 11 2 15 15 C 1.46494 * 120.00297 * 179.97438 * 14 12 11 16 16 C 1.50696 * 109.47526 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99708 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00367 * 180.02562 * 16 15 14 19 19 N 1.31510 * 119.99953 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99819 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47222 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47139 * 119.99836 * 20 18 16 23 23 H 1.48508 * 109.46755 * 239.99482 * 20 18 16 24 24 H 1.08999 * 109.47071 * 0.02995 * 1 2 3 25 25 H 1.09004 * 109.47001 * 120.02650 * 1 2 3 26 26 H 1.09000 * 109.46942 * 240.02586 * 1 2 3 27 27 H 1.07999 * 118.65929 * 179.97438 * 6 5 4 28 28 H 0.96706 * 113.99450 * 90.00466 * 9 8 7 29 29 H 0.97005 * 119.99559 * 0.02562 * 14 12 11 30 30 H 1.09000 * 109.47345 * 300.00250 * 15 14 12 31 31 H 1.09004 * 109.46953 * 60.00395 * 15 14 12 32 32 H 0.96996 * 120.00340 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2775 1.0961 0.0000 4 6 3.5836 0.7778 0.0006 5 7 4.7086 1.4880 0.0012 6 6 5.8810 0.8904 0.0012 7 7 6.0113 -0.4235 0.0013 8 6 4.9435 -1.2148 0.0011 9 8 5.0784 -2.5628 0.0007 10 6 3.6787 -0.6219 0.0011 11 6 2.2896 -1.1132 0.0005 12 6 1.8420 -2.5148 0.0006 13 8 1.6566 -3.0940 1.0542 14 7 1.6374 -3.1570 -1.1665 15 6 1.1923 -4.5527 -1.1664 16 6 1.0404 -5.0317 -2.5871 17 1 1.2545 -4.3634 -3.4081 18 6 0.6282 -6.3231 -2.8389 19 7 0.3680 -7.1370 -1.8393 20 14 0.4407 -6.9169 -4.6001 21 1 0.7926 -5.8170 -5.5335 22 1 1.3449 -8.0718 -4.8320 23 1 -0.9652 -7.3340 -4.8348 24 1 -0.3633 1.0277 -0.0005 25 1 -0.3633 -0.5143 -0.8898 26 1 -0.3633 -0.5134 0.8902 27 1 6.7728 1.4994 0.0013 28 1 5.1175 -2.9543 0.8841 29 1 1.7856 -2.6952 -2.0066 30 1 1.9297 -5.1692 -0.6524 31 1 0.2338 -4.6283 -0.6527 32 1 0.0783 -8.0456 -2.0164 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701315168.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:55 Heat of formation + Delta-G solvation = -17.498912 kcal Electronic energy + Delta-G solvation = -20906.807012 eV Core-core repulsion = 17449.056423 eV Total energy + Delta-G solvation = -3457.750589 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.17448 -40.30850 -38.78648 -37.62514 -34.29206 -33.62411 -33.04697 -32.29871 -31.75257 -28.17413 -27.11835 -24.64234 -24.02240 -23.22217 -21.86582 -20.26375 -19.01418 -18.70616 -17.38793 -17.10112 -16.91731 -16.02299 -15.58548 -15.29162 -14.99850 -14.67968 -14.30477 -14.26529 -13.85856 -13.40529 -13.08397 -13.02938 -12.63282 -12.12386 -12.04172 -11.81201 -11.09269 -11.00774 -10.92325 -10.84081 -10.39927 -10.17096 -9.69592 -9.47822 -9.41292 -8.80989 -8.57980 -8.02806 -6.22055 -4.28950 0.23810 0.71786 1.71460 1.75801 2.94635 3.08837 3.20942 3.28522 3.31442 3.40520 3.66631 3.89686 4.13790 4.17769 4.34400 4.77862 4.90710 5.02319 5.14839 5.23873 5.28118 5.29849 5.58116 5.75346 5.88983 6.47811 6.59844 7.18646 7.23651 7.25784 7.41903 7.58694 7.71129 7.89171 8.46910 8.66542 8.90956 9.37588 10.88138 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.021987 B = 0.004756 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.148291 B = 5886.471601 C = 6412.422285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.080 3.920 3 O -0.167 6.167 4 C 0.309 3.691 5 N -0.510 5.510 6 C 0.344 3.656 7 N -0.543 5.543 8 C 0.428 3.572 9 O -0.461 6.461 10 C -0.221 4.221 11 C -0.179 4.179 12 C 0.575 3.425 13 O -0.543 6.543 14 N -0.692 5.692 15 C 0.249 3.751 16 C -0.543 4.543 17 H 0.064 0.936 18 C 0.065 3.935 19 N -0.885 5.885 20 Si 0.904 3.096 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.282 1.282 24 H 0.088 0.912 25 H 0.103 0.897 26 H 0.102 0.898 27 H 0.217 0.783 28 H 0.416 0.584 29 H 0.393 0.607 30 H 0.031 0.969 31 H 0.031 0.969 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.202 15.725 3.459 16.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.031 3.969 3 O -0.062 6.062 4 C 0.126 3.874 5 N -0.235 5.235 6 C 0.057 3.943 7 N -0.271 5.271 8 C 0.236 3.764 9 O -0.270 6.270 10 C -0.229 4.229 11 C -0.185 4.185 12 C 0.358 3.642 13 O -0.423 6.423 14 N -0.338 5.338 15 C 0.129 3.871 16 C -0.582 4.582 17 H 0.082 0.918 18 C -0.138 4.138 19 N -0.522 5.522 20 Si 0.731 3.269 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.208 1.208 24 H 0.107 0.893 25 H 0.121 0.879 26 H 0.121 0.879 27 H 0.233 0.767 28 H 0.277 0.723 29 H 0.226 0.774 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.547 15.899 3.646 17.229 hybrid contribution -0.523 -0.872 -0.873 1.340 sum 5.024 15.027 2.773 16.086 Atomic orbital electron populations 1.20664 0.82511 1.05066 1.05673 1.22838 0.93943 0.81407 0.98755 1.83716 1.13075 1.34469 1.74981 1.19426 0.84776 0.87449 0.95748 1.67285 0.95485 1.41172 1.19596 1.24788 0.92960 0.86941 0.89653 1.68221 1.33347 1.06758 1.18815 1.18867 0.85235 0.85358 0.86931 1.84718 1.94779 1.12968 1.34489 1.21168 0.94762 0.95626 1.11348 1.20819 0.90374 0.95811 1.11510 1.16990 0.78615 0.83455 0.85179 1.90800 1.52937 1.67145 1.31385 1.46471 1.64838 1.16018 1.06507 1.19210 0.95591 0.74524 0.97753 1.21231 1.47614 0.97931 0.91401 0.91814 1.24927 0.94770 0.96330 0.97818 1.69971 1.44585 1.06790 1.30882 0.86360 0.77867 0.78860 0.83842 1.19630 1.20730 1.20756 0.89314 0.87858 0.87948 0.76657 0.72263 0.77437 0.95137 0.95148 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.12 36.01 0.36 -0.46 16 2 C 0.08 1.08 7.30 -35.08 -0.26 0.83 16 3 O -0.17 -2.33 10.51 6.25 0.07 -2.26 16 4 C 0.31 4.54 8.62 -16.25 -0.14 4.40 16 5 N -0.51 -6.75 10.47 -14.59 -0.15 -6.91 16 6 C 0.34 3.84 12.23 -92.13 -1.13 2.71 16 7 N -0.54 -7.30 10.47 -14.54 -0.15 -7.45 16 8 C 0.43 6.45 7.88 -16.55 -0.13 6.32 16 9 O -0.46 -6.94 13.58 -18.11 -0.25 -7.19 16 10 C -0.22 -3.47 6.41 -104.88 -0.67 -4.14 16 11 C -0.18 -2.92 6.06 -103.37 -0.63 -3.55 16 12 C 0.57 11.36 7.41 -12.65 -0.09 11.27 16 13 O -0.54 -12.58 17.11 5.24 0.09 -12.49 16 14 N -0.69 -14.33 5.54 -62.66 -0.35 -14.68 16 15 C 0.25 6.36 5.43 -5.20 -0.03 6.34 16 16 C -0.54 -14.40 9.28 -34.44 -0.32 -14.72 16 17 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 18 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 19 N -0.88 -25.41 13.29 55.43 0.74 -24.67 16 20 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.22 1.36 8.06 -52.49 -0.42 0.93 16 28 H 0.42 4.55 9.06 45.56 0.41 4.96 16 29 H 0.39 7.34 8.30 -40.82 -0.34 7.00 16 30 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.27 7.15 8.31 -40.82 -0.34 6.82 16 LS Contribution 300.05 15.07 4.52 4.52 Total: -1.00 -33.70 300.05 -5.63 -39.33 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -2.00 Total: 5.60 kcal Atomic # 6 Polarization: 13.80 SS G_CDS: -3.13 Total: 10.67 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: 0.08 Total: -53.71 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.09 Total: -21.94 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.70 -5.63 -39.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701315168.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.829 kcal (2) G-P(sol) polarization free energy of solvation -33.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds