Wall clock time and date at job start Mon Mar 30 2020 01:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33991 * 125.12038 * 2 1 4 4 C 1.34435 * 111.42513 * 179.97438 * 3 2 1 5 5 N 1.33021 * 134.03277 * 180.02562 * 4 3 2 6 6 C 1.31606 * 120.73053 * 179.97438 * 5 4 3 7 7 N 1.32025 * 122.67130 * 0.02562 * 6 5 4 8 8 C 1.32905 * 120.87698 * 359.97438 * 7 6 5 9 9 O 1.35467 * 120.82617 * 180.02562 * 8 7 6 10 10 C 1.39687 * 118.34617 * 359.97438 * 8 7 6 11 11 C 1.36176 * 125.11409 * 179.97438 * 2 1 3 12 12 C 1.47035 * 127.19156 * 0.05928 * 11 2 1 13 13 O 1.21675 * 119.99646 * 269.97591 * 12 11 2 14 14 N 1.34775 * 119.99963 * 89.96710 * 12 11 2 15 15 C 1.46495 * 120.00652 * 0.02562 * 14 12 11 16 16 C 1.36949 * 119.99569 * 180.02562 * 14 12 11 17 17 H 1.08002 * 120.00108 * 24.25919 * 16 14 12 18 18 C 1.38989 * 120.00202 * 204.25698 * 16 14 12 19 19 N 1.31414 * 119.99371 * 13.01409 * 18 16 14 20 20 Si 1.86794 * 120.00142 * 193.01457 * 18 16 14 21 21 H 1.48495 * 109.47147 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47155 * 120.00465 * 20 18 16 23 23 H 1.48504 * 109.46785 * 239.99811 * 20 18 16 24 24 H 1.09002 * 109.46605 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47382 * 120.01728 * 1 2 3 26 26 H 1.08994 * 109.47015 * 240.02497 * 1 2 3 27 27 H 1.08001 * 118.66097 * 180.02562 * 6 5 4 28 28 H 0.96704 * 113.99364 * 90.00358 * 9 8 7 29 29 H 1.08992 * 109.47052 * 86.12788 * 15 14 12 30 30 H 1.08994 * 109.47596 * 206.13783 * 15 14 12 31 31 H 1.09005 * 109.46681 * 326.13382 * 15 14 12 32 32 H 0.96998 * 119.99497 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2778 1.0960 0.0000 4 6 3.5840 0.7777 0.0006 5 7 4.7087 1.4879 0.0012 6 6 5.8813 0.8905 0.0022 7 7 6.0119 -0.4233 0.0020 8 6 4.9442 -1.2148 0.0014 9 8 5.0793 -2.5627 0.0018 10 6 3.6793 -0.6222 0.0015 11 6 2.2903 -1.1139 0.0005 12 6 1.8434 -2.5147 -0.0001 13 8 1.6580 -3.0945 1.0534 14 7 1.6389 -3.1563 -1.1675 15 6 1.8624 -2.4584 -2.4360 16 6 1.2222 -4.4609 -1.1680 17 1 0.6914 -4.8585 -0.3156 18 6 1.4823 -5.2732 -2.2654 19 7 2.3372 -4.8827 -3.1838 20 14 0.6166 -6.9197 -2.4347 21 1 -0.2894 -7.1241 -1.2761 22 1 -0.1744 -6.9362 -3.6914 23 1 1.6262 -8.0082 -2.4711 24 1 -0.3632 1.0277 -0.0005 25 1 -0.3634 -0.5141 -0.8898 26 1 -0.3633 -0.5134 0.8902 27 1 6.7731 1.4998 0.0031 28 1 5.1178 -2.9538 0.8854 29 1 2.9127 -2.5401 -2.7154 30 1 1.2438 -2.9085 -3.2123 31 1 1.5970 -1.4071 -2.3239 32 1 2.5190 -5.4497 -3.9495 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701316021.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:58 Heat of formation + Delta-G solvation = 2.763948 kcal Electronic energy + Delta-G solvation = -21794.637059 eV Core-core repulsion = 18337.765133 eV Total energy + Delta-G solvation = -3456.871926 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.81612 -39.98564 -38.38076 -37.28755 -34.74524 -33.25512 -32.71632 -31.54109 -31.42153 -27.60215 -26.37549 -24.92348 -24.25460 -23.24137 -22.14914 -19.90907 -18.40242 -18.08812 -17.01156 -16.92773 -16.76246 -15.91210 -15.52211 -14.84256 -14.65681 -14.30308 -14.11441 -13.88832 -13.55068 -13.12979 -12.82701 -12.70473 -12.31304 -11.90250 -11.64322 -11.45859 -11.33293 -10.96192 -10.65905 -10.57640 -10.38100 -10.35121 -9.83534 -9.38782 -9.10928 -8.75490 -8.14743 -7.77153 -6.41541 -3.98208 0.55849 1.02436 2.04883 2.17643 3.07722 3.21003 3.27286 3.40589 3.55837 3.70385 4.01175 4.17461 4.27285 4.48304 4.82474 4.96878 5.13483 5.27559 5.36012 5.54129 5.56956 5.64168 5.90455 6.05805 6.19989 6.31926 6.76268 6.81082 6.93772 7.13979 7.47832 7.57830 7.99393 8.02183 8.36415 9.05092 9.28604 9.84385 10.62643 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.022787 B = 0.006453 C = 0.005621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.454872 B = 4338.339630 C = 4980.201824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.049 3.951 3 O -0.171 6.171 4 C 0.304 3.696 5 N -0.514 5.514 6 C 0.339 3.661 7 N -0.549 5.549 8 C 0.431 3.569 9 O -0.456 6.456 10 C -0.221 4.221 11 C -0.139 4.139 12 C 0.506 3.494 13 O -0.582 6.582 14 N -0.419 5.419 15 C 0.113 3.887 16 C -0.311 4.311 17 H 0.102 0.898 18 C 0.034 3.966 19 N -0.870 5.870 20 Si 0.928 3.072 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.280 1.280 24 H 0.082 0.918 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.214 0.786 28 H 0.412 0.588 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.021 0.979 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.091 9.723 2.704 10.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.001 3.999 3 O -0.067 6.067 4 C 0.122 3.878 5 N -0.240 5.240 6 C 0.051 3.949 7 N -0.277 5.277 8 C 0.239 3.761 9 O -0.263 6.263 10 C -0.229 4.229 11 C -0.145 4.145 12 C 0.293 3.707 13 O -0.468 6.468 14 N -0.135 5.135 15 C -0.030 4.030 16 C -0.438 4.438 17 H 0.120 0.880 18 C -0.171 4.171 19 N -0.508 5.508 20 Si 0.754 3.246 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.206 1.206 24 H 0.101 0.899 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.230 0.770 28 H 0.274 0.726 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.040 0.960 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.609 10.163 2.397 10.565 hybrid contribution -0.683 -1.392 0.049 1.551 sum 0.926 8.771 2.446 9.153 Atomic orbital electron populations 1.20518 0.82984 1.04282 1.05248 1.22838 0.93830 0.81562 1.01704 1.83663 1.12952 1.34726 1.75316 1.19434 0.84788 0.87608 0.96015 1.67237 0.95516 1.41219 1.19988 1.24692 0.92909 0.87019 0.90260 1.68192 1.33537 1.06699 1.19300 1.18891 0.85280 0.85368 0.86535 1.84757 1.94734 1.12841 1.34011 1.21271 0.95244 0.95517 1.10875 1.20955 0.89791 0.96282 1.07469 1.16712 0.84990 0.83954 0.85027 1.90650 1.57598 1.67495 1.31022 1.43443 1.55237 1.11227 1.03589 1.21466 1.02254 0.92084 0.87237 1.19693 1.33877 0.85705 1.04563 0.88022 1.25419 0.95706 0.99632 0.96298 1.70033 1.30611 1.38414 1.11758 0.85842 0.79179 0.81170 0.78404 1.19067 1.20560 1.20612 0.89861 0.88448 0.88372 0.76965 0.72632 0.92797 0.90460 0.96006 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 10.12 36.00 0.36 -0.60 16 2 C 0.05 0.84 6.98 -35.05 -0.24 0.60 16 3 O -0.17 -2.92 10.51 6.18 0.06 -2.85 16 4 C 0.30 5.42 8.61 -16.26 -0.14 5.28 16 5 N -0.51 -8.18 10.46 -14.59 -0.15 -8.33 16 6 C 0.34 4.67 12.23 -92.12 -1.13 3.54 16 7 N -0.55 -8.96 10.47 -14.54 -0.15 -9.11 16 8 C 0.43 8.02 7.88 -16.55 -0.13 7.89 16 9 O -0.46 -8.69 13.58 -18.09 -0.25 -8.93 16 10 C -0.22 -4.29 6.41 -104.87 -0.67 -4.96 16 11 C -0.14 -2.84 4.36 -103.37 -0.45 -3.29 16 12 C 0.51 12.30 7.23 -12.70 -0.09 12.21 16 13 O -0.58 -15.84 16.82 5.21 0.09 -15.75 16 14 N -0.42 -10.58 3.01 -123.56 -0.37 -10.95 16 15 C 0.11 2.60 8.46 59.84 0.51 3.11 16 16 C -0.31 -8.38 9.24 -14.99 -0.14 -8.51 16 17 H 0.10 2.84 7.44 -52.49 -0.39 2.45 16 18 C 0.03 0.88 5.04 -17.45 -0.09 0.79 16 19 N -0.87 -22.96 10.84 55.50 0.60 -22.35 16 20 Si 0.93 20.08 29.57 -169.99 -5.03 15.05 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 24 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 26 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.21 1.83 8.06 -52.49 -0.42 1.41 16 28 H 0.41 6.05 9.06 45.56 0.41 6.46 16 29 H 0.05 1.33 7.81 -51.93 -0.41 0.93 16 30 H 0.08 1.81 6.82 -51.93 -0.35 1.46 16 31 H 0.02 0.43 6.79 -51.93 -0.35 0.08 16 32 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 291.84 15.07 4.40 4.40 Total: -1.00 -33.17 291.84 -4.92 -38.09 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -1.92 Total: 4.69 kcal Atomic # 6 Polarization: 18.26 SS G_CDS: -2.21 Total: 16.05 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: -0.07 Total: -50.74 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.09 Total: -27.54 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.05 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.17 -4.92 -38.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701316021.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.857 kcal (2) G-P(sol) polarization free energy of solvation -33.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds