Wall clock time and date at job start Mon Mar 30 2020 01:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33991 * 125.12038 * 2 1 4 4 C 1.34435 * 111.42513 * 179.97438 * 3 2 1 5 5 N 1.33021 * 134.03277 * 180.02562 * 4 3 2 6 6 C 1.31606 * 120.73053 * 179.97438 * 5 4 3 7 7 N 1.32025 * 122.67130 * 0.02562 * 6 5 4 8 8 C 1.32905 * 120.87698 * 359.97438 * 7 6 5 9 9 O 1.35467 * 120.82617 * 180.02562 * 8 7 6 10 10 C 1.39687 * 118.34617 * 359.97438 * 8 7 6 11 11 C 1.36176 * 125.11409 * 179.97438 * 2 1 3 12 12 C 1.47035 * 127.19156 * 0.05928 * 11 2 1 13 13 O 1.21675 * 119.99646 * 269.97591 * 12 11 2 14 14 N 1.34775 * 119.99963 * 89.96710 * 12 11 2 15 15 C 1.46495 * 120.00652 * 0.02562 * 14 12 11 16 16 C 1.36949 * 119.99569 * 180.02562 * 14 12 11 17 17 H 1.08002 * 120.00108 * 24.25919 * 16 14 12 18 18 C 1.38989 * 120.00202 * 204.25698 * 16 14 12 19 19 N 1.31414 * 119.99371 * 13.01409 * 18 16 14 20 20 Si 1.86794 * 120.00142 * 193.01457 * 18 16 14 21 21 H 1.48495 * 109.47147 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47155 * 120.00465 * 20 18 16 23 23 H 1.48504 * 109.46785 * 239.99811 * 20 18 16 24 24 H 1.09002 * 109.46605 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47382 * 120.01728 * 1 2 3 26 26 H 1.08994 * 109.47015 * 240.02497 * 1 2 3 27 27 H 1.08001 * 118.66097 * 180.02562 * 6 5 4 28 28 H 0.96704 * 113.99364 * 90.00358 * 9 8 7 29 29 H 1.08992 * 109.47052 * 86.12788 * 15 14 12 30 30 H 1.08994 * 109.47596 * 206.13783 * 15 14 12 31 31 H 1.09005 * 109.46681 * 326.13382 * 15 14 12 32 32 H 0.96998 * 119.99497 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2778 1.0960 0.0000 4 6 3.5840 0.7777 0.0006 5 7 4.7087 1.4879 0.0012 6 6 5.8813 0.8905 0.0022 7 7 6.0119 -0.4233 0.0020 8 6 4.9442 -1.2148 0.0014 9 8 5.0793 -2.5627 0.0018 10 6 3.6793 -0.6222 0.0015 11 6 2.2903 -1.1139 0.0005 12 6 1.8434 -2.5147 -0.0001 13 8 1.6580 -3.0945 1.0534 14 7 1.6389 -3.1563 -1.1675 15 6 1.8624 -2.4584 -2.4360 16 6 1.2222 -4.4609 -1.1680 17 1 0.6914 -4.8585 -0.3156 18 6 1.4823 -5.2732 -2.2654 19 7 2.3372 -4.8827 -3.1838 20 14 0.6166 -6.9197 -2.4347 21 1 -0.2894 -7.1241 -1.2761 22 1 -0.1744 -6.9362 -3.6914 23 1 1.6262 -8.0082 -2.4711 24 1 -0.3632 1.0277 -0.0005 25 1 -0.3634 -0.5141 -0.8898 26 1 -0.3633 -0.5134 0.8902 27 1 6.7731 1.4998 0.0031 28 1 5.1178 -2.9538 0.8854 29 1 2.9127 -2.5401 -2.7154 30 1 1.2438 -2.9085 -3.2123 31 1 1.5970 -1.4071 -2.3239 32 1 2.5190 -5.4497 -3.9495 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701316021.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:58 Heat of formation + Delta-G solvation = -24.668557 kcal Electronic energy + Delta-G solvation = -21795.826621 eV Core-core repulsion = 18337.765133 eV Total energy + Delta-G solvation = -3458.061489 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.18401 -41.30066 -40.26292 -38.70253 -36.71998 -34.70112 -34.09145 -33.44998 -32.67528 -28.97887 -28.23779 -26.74587 -25.62999 -24.61125 -23.69785 -21.41994 -19.80733 -19.68371 -18.91958 -18.35463 -18.16134 -17.60121 -17.02668 -16.54570 -16.02457 -15.89278 -15.76041 -15.51425 -14.83126 -14.62304 -14.37079 -13.95910 -13.69533 -13.50318 -13.36444 -13.21171 -13.02726 -12.69772 -12.46673 -12.10668 -12.02463 -11.85341 -11.23276 -11.05226 -10.76525 -10.62109 -9.77616 -9.54973 -8.38766 -6.04692 -0.76555 -0.30620 0.72919 0.74926 1.33470 1.43058 1.57489 1.76294 2.12069 2.24869 2.41763 2.68866 2.94492 3.04332 3.18747 3.24827 3.79777 3.86411 4.01173 4.24384 4.40543 4.46299 4.53670 4.60661 4.86465 4.91153 5.05284 5.21671 5.42132 5.47099 5.59531 6.03275 6.28081 6.38791 6.73803 7.06578 7.33630 7.90156 8.64934 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.022787 B = 0.006453 C = 0.005621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.454872 B = 4338.339630 C = 4980.201824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.081 3.919 3 O -0.163 6.163 4 C 0.302 3.698 5 N -0.512 5.512 6 C 0.350 3.650 7 N -0.550 5.550 8 C 0.416 3.584 9 O -0.478 6.478 10 C -0.243 4.243 11 C -0.186 4.186 12 C 0.515 3.485 13 O -0.621 6.621 14 N -0.432 5.432 15 C 0.132 3.868 16 C -0.343 4.343 17 H 0.082 0.918 18 C 0.000 4.000 19 N -0.893 5.893 20 Si 0.994 3.006 21 H -0.267 1.267 22 H -0.265 1.265 23 H -0.279 1.279 24 H 0.123 0.877 25 H 0.102 0.898 26 H 0.100 0.900 27 H 0.269 0.731 28 H 0.424 0.576 29 H 0.029 0.971 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.997 11.271 2.300 11.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.031 3.969 3 O -0.058 6.058 4 C 0.119 3.881 5 N -0.238 5.238 6 C 0.064 3.936 7 N -0.279 5.279 8 C 0.224 3.776 9 O -0.288 6.288 10 C -0.251 4.251 11 C -0.193 4.193 12 C 0.303 3.697 13 O -0.510 6.510 14 N -0.148 5.148 15 C -0.012 4.012 16 C -0.471 4.471 17 H 0.100 0.900 18 C -0.203 4.203 19 N -0.530 5.530 20 Si 0.817 3.183 21 H -0.191 1.191 22 H -0.189 1.189 23 H -0.204 1.204 24 H 0.141 0.859 25 H 0.120 0.880 26 H 0.118 0.882 27 H 0.284 0.716 28 H 0.287 0.713 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.534 11.737 1.983 12.002 hybrid contribution -0.565 -1.779 0.219 1.879 sum 0.969 9.959 2.202 10.245 Atomic orbital electron populations 1.20786 0.80027 1.07030 1.05447 1.23426 0.95097 0.80562 0.97766 1.83709 1.12777 1.34264 1.75031 1.19677 0.85445 0.87079 0.95901 1.67438 0.95361 1.40838 1.20171 1.25875 0.93823 0.86515 0.87348 1.68283 1.32602 1.07682 1.19284 1.19066 0.85860 0.85280 0.87348 1.84700 1.94837 1.13853 1.35428 1.21370 0.94995 0.96477 1.12293 1.20572 0.91306 0.94986 1.12399 1.17088 0.83281 0.85284 0.84037 1.90598 1.58933 1.69147 1.32294 1.43614 1.55506 1.11087 1.04570 1.21262 1.00406 0.93365 0.86124 1.19706 1.35434 0.87106 1.04846 0.90021 1.26212 0.95838 1.02786 0.95422 1.70119 1.31093 1.39712 1.12084 0.84866 0.78065 0.76633 0.78721 1.19120 1.18947 1.20436 0.85881 0.87994 0.88155 0.71624 0.71272 0.95214 0.91357 0.93153 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.83 10.12 71.24 0.72 -1.11 16 2 C 0.08 2.65 6.98 25.20 0.18 2.83 16 3 O -0.16 -5.21 10.51 -0.80 -0.01 -5.22 16 4 C 0.30 10.27 8.61 85.02 0.73 11.00 16 5 N -0.51 -14.96 10.46 -313.22 -3.28 -18.24 16 6 C 0.35 8.62 12.23 180.87 2.21 10.83 16 7 N -0.55 -17.17 10.47 -312.56 -3.27 -20.44 16 8 C 0.42 15.53 7.88 84.88 0.67 16.20 16 9 O -0.48 -18.89 13.58 -87.66 -1.19 -20.08 16 10 C -0.24 -9.40 6.41 -20.03 -0.13 -9.53 16 11 C -0.19 -7.66 4.36 -19.05 -0.08 -7.74 16 12 C 0.51 25.70 7.23 86.55 0.63 26.33 16 13 O -0.62 -35.16 16.82 -4.27 -0.07 -35.23 16 14 N -0.43 -22.41 3.01 -663.07 -1.99 -24.41 16 15 C 0.13 6.15 8.46 127.77 1.08 7.23 16 16 C -0.34 -19.07 9.24 84.07 0.78 -18.30 16 17 H 0.08 4.76 7.44 -2.91 -0.02 4.74 16 18 C 0.00 0.01 5.04 84.94 0.43 0.43 16 19 N -0.89 -47.61 10.84 21.67 0.23 -47.37 16 20 Si 0.99 41.34 29.57 68.60 2.03 43.37 16 21 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 22 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 23 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 24 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.27 3.31 8.06 -2.91 -0.02 3.29 16 28 H 0.42 13.24 9.06 -74.05 -0.67 12.57 16 29 H 0.03 1.50 7.81 -2.39 -0.02 1.48 16 30 H 0.07 3.25 6.82 -2.39 -0.02 3.23 16 31 H 0.05 2.00 6.79 -2.38 -0.02 1.98 16 32 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 Total: -1.00 -73.41 291.84 0.18 -73.23 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.52 Total: 16.22 kcal Atomic # 6 Polarization: 30.97 SS G_CDS: 7.21 Total: 38.18 kcal Atomic # 7 Polarization: -102.16 SS G_CDS: -8.31 Total: -110.46 kcal Atomic # 8 Polarization: -59.26 SS G_CDS: -1.27 Total: -60.53 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -73.41 0.18 -73.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701316021.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.561 kcal (2) G-P(sol) polarization free energy of solvation -73.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds