Wall clock time and date at job start Mon Mar 30 2020 01:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86799 * 119.99482 * 2 1 4 4 H 1.48500 * 109.47237 * 269.99506 * 3 2 1 5 5 H 1.48502 * 109.47387 * 30.00146 * 3 2 1 6 6 H 1.48506 * 109.46879 * 150.00306 * 3 2 1 7 7 C 1.38800 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00525 * 0.02562 * 7 2 1 9 9 S 1.76207 * 119.99662 * 179.97438 * 7 2 1 10 10 C 1.76205 * 99.99687 * 185.65719 * 9 7 2 11 11 C 1.39104 * 120.19165 * 6.85412 * 10 9 7 12 12 C 1.37919 * 120.05200 * 180.02562 * 11 10 9 13 13 C 1.38654 * 120.43261 * 0.02562 * 12 11 10 14 14 C 1.37804 * 120.38610 * 359.97438 * 13 12 11 15 15 C 1.39671 * 119.94119 * 0.02562 * 14 13 12 16 16 C 1.47421 * 120.22134 * 180.02562 * 15 14 13 17 17 O 1.21609 * 120.00590 * 179.97438 * 16 15 14 18 18 N 1.34781 * 119.99927 * 359.97438 * 16 15 14 19 19 C 1.46497 * 120.00277 * 180.02562 * 18 16 15 20 20 C 1.53788 * 113.60929 * 254.13347 * 19 18 16 21 21 C 1.53953 * 87.01713 * 220.04657 * 20 19 18 22 22 C 1.53777 * 87.11348 * 25.36484 * 21 20 19 23 23 H 0.97001 * 120.00552 * 0.02562 * 1 2 3 24 24 H 1.07998 * 119.97795 * 0.02562 * 11 10 9 25 25 H 1.07996 * 119.78081 * 179.72277 * 12 11 10 26 26 H 1.08008 * 119.80714 * 179.97438 * 13 12 11 27 27 H 1.08000 * 120.03027 * 179.97438 * 14 13 12 28 28 H 0.96999 * 119.99551 * 359.97438 * 18 16 15 29 29 H 1.08998 * 112.85142 * 25.32433 * 19 18 16 30 30 H 1.08992 * 113.61318 * 334.56639 * 20 19 18 31 31 H 1.09006 * 113.60911 * 105.47258 * 20 19 18 32 32 H 1.09005 * 113.53542 * 270.81312 * 21 20 19 33 33 H 1.09004 * 113.66777 * 139.93747 * 21 20 19 34 34 H 1.09004 * 113.61678 * 220.09561 * 22 21 20 35 35 H 1.08994 * 113.69318 * 89.19305 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4468 2.6527 0.7001 6 1 3.5470 1.4403 0.7000 7 6 2.0095 -1.2020 0.0005 8 1 1.4696 -2.1374 0.0005 9 16 3.7716 -1.2020 -0.0001 10 6 4.0775 -2.9289 -0.1702 11 6 3.0233 -3.8068 -0.4003 12 6 3.2659 -5.1580 -0.5324 13 6 4.5579 -5.6522 -0.4369 14 6 5.6156 -4.7987 -0.2092 15 6 5.3880 -3.4274 -0.0729 16 6 6.5150 -2.5087 0.1702 17 8 6.3124 -1.3154 0.2877 18 7 7.7701 -2.9913 0.2621 19 6 8.8900 -2.0785 0.5042 20 6 9.7642 -1.8334 -0.7370 21 6 10.9796 -1.8954 0.2060 22 6 10.1143 -2.7600 1.1379 23 1 -0.4851 0.8400 -0.0004 24 1 2.0139 -3.4300 -0.4756 25 1 2.4437 -5.8361 -0.7065 26 1 4.7363 -6.7122 -0.5415 27 1 6.6195 -5.1899 -0.1354 28 1 7.9316 -3.9432 0.1687 29 1 8.5877 -1.1632 1.0130 30 1 9.7318 -2.6470 -1.4615 31 1 9.6125 -0.8542 -1.1914 32 1 11.2494 -0.9292 0.6324 33 1 11.8333 -2.4267 -0.2148 34 1 10.2447 -2.5279 2.1949 35 1 10.1769 -3.8277 0.9281 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712274935.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:56 Heat of formation + Delta-G solvation = 9.800554 kcal Electronic energy + Delta-G solvation = -18577.089353 eV Core-core repulsion = 15666.815772 eV Total energy + Delta-G solvation = -2910.273581 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.95462 -38.45211 -37.19035 -33.25662 -32.70557 -30.50499 -30.37813 -25.90188 -25.77285 -25.28513 -22.92459 -22.00984 -20.26282 -19.88430 -18.19591 -17.11274 -16.49657 -15.90109 -15.35501 -15.10449 -14.73150 -14.46446 -13.99193 -13.80054 -13.41056 -12.91545 -12.66666 -12.63277 -12.39278 -11.98445 -11.88546 -11.43738 -11.31635 -11.18224 -10.89576 -10.73914 -10.52391 -10.49682 -9.76941 -9.68578 -9.45383 -8.85024 -8.80548 -8.41494 -8.21330 -6.79687 -6.47612 -4.18688 1.42104 1.91744 2.87299 3.20926 3.37050 3.39859 3.44103 3.50834 4.15573 4.36144 4.42724 4.54253 4.65047 4.76406 4.84621 4.95605 5.19860 5.24342 5.49931 5.52372 5.54767 5.62521 5.70058 5.86164 5.90134 5.94325 6.05701 6.24701 6.27201 6.50222 6.71453 6.77564 6.97091 7.05967 7.45723 7.75746 7.83033 8.34713 8.68267 8.96608 10.59639 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.017622 B = 0.005893 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.569822 B = 4750.529359 C = 6207.150611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.103 3.897 3 Si 0.849 3.151 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.234 1.234 7 C -0.580 4.580 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.031 4.031 11 C -0.144 4.144 12 C -0.077 4.077 13 C -0.177 4.177 14 C -0.065 4.065 15 C -0.173 4.173 16 C 0.554 3.446 17 O -0.513 6.513 18 N -0.727 5.727 19 C 0.127 3.873 20 C -0.155 4.155 21 C -0.139 4.139 22 C -0.148 4.148 23 H 0.275 0.725 24 H 0.146 0.854 25 H 0.116 0.884 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.395 0.605 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.305 -8.350 -0.052 19.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.107 4.107 3 Si 0.673 3.327 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.158 1.158 7 C -0.726 4.726 8 H 0.123 0.877 9 S 0.347 5.653 10 C -0.150 4.150 11 C -0.169 4.169 12 C -0.099 4.099 13 C -0.201 4.201 14 C -0.085 4.085 15 C -0.188 4.188 16 C 0.344 3.656 17 O -0.390 6.390 18 N -0.380 5.380 19 C 0.021 3.979 20 C -0.194 4.194 21 C -0.177 4.177 22 C -0.186 4.186 23 H 0.085 0.915 24 H 0.164 0.836 25 H 0.134 0.866 26 H 0.132 0.868 27 H 0.130 0.870 28 H 0.231 0.769 29 H 0.131 0.869 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 17.568 -6.050 0.171 18.582 hybrid contribution -0.728 -0.946 -0.229 1.216 sum 16.840 -6.996 -0.059 18.236 Atomic orbital electron populations 1.69909 1.06154 1.28266 1.45336 1.24797 0.94515 0.99026 0.92403 0.86879 0.82066 0.83374 0.80366 1.18752 1.19373 1.15780 1.23537 0.91929 0.98327 1.58787 0.87673 1.84129 1.05039 0.97448 1.78664 1.22536 0.94002 1.01366 0.97056 1.21578 1.00138 0.92811 1.02387 1.21143 0.96474 0.95145 0.97097 1.20720 0.92926 0.98829 1.07655 1.20894 0.98092 0.91971 0.97583 1.19202 0.92160 0.93293 1.14101 1.18334 0.82552 0.88151 0.76610 1.90751 1.83404 1.15786 1.49087 1.45857 1.06226 1.10480 1.75416 1.22454 0.84129 0.94736 0.96531 1.23479 0.95710 1.02705 0.97502 1.22710 0.96822 1.00386 0.97810 1.23317 0.95615 0.99817 0.99853 0.91532 0.83622 0.86605 0.86790 0.86968 0.76949 0.86852 0.89936 0.91026 0.89929 0.91131 0.90904 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.27 13.96 55.49 0.77 -24.50 16 2 C 0.10 2.95 5.50 -17.46 -0.10 2.85 16 3 Si 0.85 21.05 27.74 -169.99 -4.71 16.33 16 4 H -0.26 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 6 H -0.23 -5.82 6.74 56.52 0.38 -5.44 16 7 C -0.58 -16.39 9.54 30.94 0.30 -16.09 16 8 H 0.11 3.06 5.21 -52.48 -0.27 2.79 16 9 S 0.09 2.21 16.53 -107.50 -1.78 0.43 16 10 C -0.03 -0.69 6.15 -38.39 -0.24 -0.92 16 11 C -0.14 -3.03 9.22 -39.38 -0.36 -3.39 16 12 C -0.08 -1.30 10.03 -39.54 -0.40 -1.69 16 13 C -0.18 -2.63 10.02 -39.59 -0.40 -3.03 16 14 C -0.07 -0.99 9.53 -39.21 -0.37 -1.36 16 15 C -0.17 -3.31 5.89 -104.75 -0.62 -3.93 16 16 C 0.55 10.31 7.75 -12.52 -0.10 10.21 16 17 O -0.51 -11.47 13.39 5.27 0.07 -11.40 16 18 N -0.73 -9.84 5.31 -54.09 -0.29 -10.13 16 19 C 0.13 1.52 4.21 -67.12 -0.28 1.24 16 20 C -0.15 -1.61 7.89 -25.82 -0.20 -1.81 16 21 C -0.14 -1.13 8.09 -25.83 -0.21 -1.34 16 22 C -0.15 -1.28 7.83 -25.92 -0.20 -1.48 16 23 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.15 3.33 5.04 -52.49 -0.26 3.06 16 25 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 26 H 0.11 1.32 8.06 -52.48 -0.42 0.89 16 27 H 0.11 1.24 6.40 -52.49 -0.34 0.91 16 28 H 0.40 4.19 6.74 -40.82 -0.28 3.91 16 29 H 0.11 1.59 7.50 -51.93 -0.39 1.21 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.62 8.11 -51.93 -0.42 0.20 16 LS Contribution 303.67 15.07 4.58 4.58 Total: -1.00 -31.73 303.67 -8.61 -40.34 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -4.07 Total: 5.09 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -3.18 Total: -20.75 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: 0.49 Total: -34.62 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.07 Total: -11.40 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.71 Total: 16.33 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -1.78 Total: 0.43 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.73 -8.61 -40.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712274935.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.145 kcal (2) G-P(sol) polarization free energy of solvation -31.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds