Wall clock time and date at job start Mon Mar 30 2020 01:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86799 * 119.99482 * 2 1 4 4 H 1.48500 * 109.47237 * 269.99506 * 3 2 1 5 5 H 1.48502 * 109.47387 * 30.00146 * 3 2 1 6 6 H 1.48506 * 109.46879 * 150.00306 * 3 2 1 7 7 C 1.38800 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00525 * 0.02562 * 7 2 1 9 9 S 1.76207 * 119.99662 * 179.97438 * 7 2 1 10 10 C 1.76205 * 99.99687 * 185.65719 * 9 7 2 11 11 C 1.39104 * 120.19165 * 6.85412 * 10 9 7 12 12 C 1.37919 * 120.05200 * 180.02562 * 11 10 9 13 13 C 1.38654 * 120.43261 * 0.02562 * 12 11 10 14 14 C 1.37804 * 120.38610 * 359.97438 * 13 12 11 15 15 C 1.39671 * 119.94119 * 0.02562 * 14 13 12 16 16 C 1.47421 * 120.22134 * 180.02562 * 15 14 13 17 17 O 1.21609 * 120.00590 * 179.97438 * 16 15 14 18 18 N 1.34781 * 119.99927 * 359.97438 * 16 15 14 19 19 C 1.46497 * 120.00277 * 180.02562 * 18 16 15 20 20 C 1.53788 * 113.60929 * 254.13347 * 19 18 16 21 21 C 1.53953 * 87.01713 * 220.04657 * 20 19 18 22 22 C 1.53777 * 87.11348 * 25.36484 * 21 20 19 23 23 H 0.97001 * 120.00552 * 0.02562 * 1 2 3 24 24 H 1.07998 * 119.97795 * 0.02562 * 11 10 9 25 25 H 1.07996 * 119.78081 * 179.72277 * 12 11 10 26 26 H 1.08008 * 119.80714 * 179.97438 * 13 12 11 27 27 H 1.08000 * 120.03027 * 179.97438 * 14 13 12 28 28 H 0.96999 * 119.99551 * 359.97438 * 18 16 15 29 29 H 1.08998 * 112.85142 * 25.32433 * 19 18 16 30 30 H 1.08992 * 113.61318 * 334.56639 * 20 19 18 31 31 H 1.09006 * 113.60911 * 105.47258 * 20 19 18 32 32 H 1.09005 * 113.53542 * 270.81312 * 21 20 19 33 33 H 1.09004 * 113.66777 * 139.93747 * 21 20 19 34 34 H 1.09004 * 113.61678 * 220.09561 * 22 21 20 35 35 H 1.08994 * 113.69318 * 89.19305 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4468 2.6527 0.7001 6 1 3.5470 1.4403 0.7000 7 6 2.0095 -1.2020 0.0005 8 1 1.4696 -2.1374 0.0005 9 16 3.7716 -1.2020 -0.0001 10 6 4.0775 -2.9289 -0.1702 11 6 3.0233 -3.8068 -0.4003 12 6 3.2659 -5.1580 -0.5324 13 6 4.5579 -5.6522 -0.4369 14 6 5.6156 -4.7987 -0.2092 15 6 5.3880 -3.4274 -0.0729 16 6 6.5150 -2.5087 0.1702 17 8 6.3124 -1.3154 0.2877 18 7 7.7701 -2.9913 0.2621 19 6 8.8900 -2.0785 0.5042 20 6 9.7642 -1.8334 -0.7370 21 6 10.9796 -1.8954 0.2060 22 6 10.1143 -2.7600 1.1379 23 1 -0.4851 0.8400 -0.0004 24 1 2.0139 -3.4300 -0.4756 25 1 2.4437 -5.8361 -0.7065 26 1 4.7363 -6.7122 -0.5415 27 1 6.6195 -5.1899 -0.1354 28 1 7.9316 -3.9432 0.1687 29 1 8.5877 -1.1632 1.0130 30 1 9.7318 -2.6470 -1.4615 31 1 9.6125 -0.8542 -1.1914 32 1 11.2494 -0.9292 0.6324 33 1 11.8333 -2.4267 -0.2148 34 1 10.2447 -2.5279 2.1949 35 1 10.1769 -3.8277 0.9281 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712274935.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:55 Heat of formation + Delta-G solvation = -11.264842 kcal Electronic energy + Delta-G solvation = -18578.002817 eV Core-core repulsion = 15666.815772 eV Total energy + Delta-G solvation = -2911.187045 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.22847 -39.60885 -38.54524 -34.82917 -34.54315 -31.91881 -31.85432 -27.99896 -26.54366 -26.34181 -24.22665 -23.43832 -21.67589 -20.87567 -19.85932 -18.64998 -17.69813 -17.38770 -17.10621 -16.21652 -16.17542 -15.82040 -15.44166 -15.31535 -15.09650 -14.39540 -13.90701 -13.68309 -13.61677 -13.34255 -13.19844 -13.11928 -13.05377 -12.51872 -12.27214 -12.23102 -11.54367 -11.50375 -11.40038 -11.35562 -11.25966 -10.58874 -10.08417 -10.03226 -9.77877 -8.68190 -8.60653 -6.31822 -0.03698 0.46532 0.99311 1.21699 1.39198 1.62505 1.96887 2.14095 2.26118 2.66968 2.76771 2.97223 3.62665 3.77661 3.88631 3.96028 4.01554 4.04225 4.22977 4.55164 4.58608 4.73483 4.79809 4.83233 4.86484 5.05302 5.09774 5.10343 5.17267 5.35324 5.37966 5.48638 5.60837 5.65055 5.70459 6.04744 6.15405 6.64841 6.83324 7.34457 8.50637 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.017622 B = 0.005893 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.569822 B = 4750.529359 C = 6207.150611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.055 3.945 3 Si 0.906 3.094 4 H -0.258 1.258 5 H -0.251 1.251 6 H -0.241 1.241 7 C -0.586 4.586 8 H 0.080 0.920 9 S 0.020 5.980 10 C -0.056 4.056 11 C -0.170 4.170 12 C -0.072 4.072 13 C -0.147 4.147 14 C -0.054 4.054 15 C -0.175 4.175 16 C 0.547 3.453 17 O -0.559 6.559 18 N -0.701 5.701 19 C 0.105 3.895 20 C -0.156 4.156 21 C -0.128 4.128 22 C -0.131 4.131 23 H 0.279 0.721 24 H 0.112 0.888 25 H 0.147 0.853 26 H 0.170 0.830 27 H 0.168 0.832 28 H 0.414 0.586 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.053 0.947 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.145 -11.968 -0.231 24.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.152 4.152 3 Si 0.727 3.273 4 H -0.182 1.182 5 H -0.175 1.175 6 H -0.166 1.166 7 C -0.732 4.732 8 H 0.097 0.903 9 S 0.276 5.724 10 C -0.174 4.174 11 C -0.195 4.195 12 C -0.093 4.093 13 C -0.169 4.169 14 C -0.073 4.073 15 C -0.188 4.188 16 C 0.336 3.664 17 O -0.440 6.440 18 N -0.354 5.354 19 C 0.001 3.999 20 C -0.194 4.194 21 C -0.166 4.166 22 C -0.169 4.169 23 H 0.089 0.911 24 H 0.130 0.870 25 H 0.165 0.835 26 H 0.188 0.812 27 H 0.185 0.815 28 H 0.253 0.747 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 21.475 -9.782 -0.014 23.598 hybrid contribution -1.694 -0.246 -0.207 1.724 sum 19.781 -10.028 -0.220 22.179 Atomic orbital electron populations 1.69983 1.07365 1.29257 1.47723 1.25562 0.95272 1.02018 0.92337 0.86038 0.80666 0.80031 0.80569 1.18234 1.17518 1.16563 1.23651 0.93573 0.97559 1.58426 0.90260 1.84053 1.02872 1.02090 1.83400 1.22547 0.96163 0.98943 0.99701 1.21459 0.98433 0.94963 1.04660 1.21551 0.99088 0.93339 0.95316 1.21398 0.91183 1.01461 1.02884 1.21495 1.01118 0.89687 0.95024 1.19589 0.90877 0.95519 1.12793 1.18480 0.84020 0.87496 0.76400 1.90734 1.84176 1.17769 1.51276 1.45681 1.04801 1.11707 1.73218 1.22722 0.84508 0.94303 0.98405 1.23502 0.96462 1.02202 0.97280 1.22682 0.96527 1.00739 0.96638 1.23295 0.92566 1.00927 1.00080 0.91094 0.87047 0.83523 0.81215 0.81484 0.74746 0.89868 0.88776 0.92815 0.89884 0.88896 0.90406 0.87437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.21 13.96 21.64 0.30 -55.91 16 2 C 0.05 3.30 5.50 84.87 0.47 3.76 16 3 Si 0.91 46.01 27.74 68.60 1.90 47.91 16 4 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.25 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.24 -12.46 6.74 99.48 0.67 -11.79 16 7 C -0.59 -35.72 9.54 67.95 0.65 -35.07 16 8 H 0.08 5.07 5.21 -2.91 -0.02 5.06 16 9 S 0.02 1.11 16.53 -56.49 -0.93 0.18 16 10 C -0.06 -2.60 6.15 23.04 0.14 -2.46 16 11 C -0.17 -7.32 9.22 22.40 0.21 -7.11 16 12 C -0.07 -2.22 10.03 22.29 0.22 -2.00 16 13 C -0.15 -3.44 10.02 22.27 0.22 -3.22 16 14 C -0.05 -1.33 9.53 22.51 0.21 -1.11 16 15 C -0.18 -6.41 5.89 -19.95 -0.12 -6.53 16 16 C 0.55 19.95 7.75 86.66 0.67 20.62 16 17 O -0.56 -25.91 13.39 -4.06 -0.05 -25.97 16 18 N -0.70 -17.00 5.31 -443.29 -2.35 -19.36 16 19 C 0.11 2.33 4.21 45.52 0.19 2.53 16 20 C -0.16 -2.88 7.89 31.18 0.25 -2.64 16 21 C -0.13 -1.64 8.09 31.18 0.25 -1.39 16 22 C -0.13 -1.74 7.83 31.12 0.24 -1.50 16 23 H 0.28 15.91 8.31 -92.71 -0.77 15.14 16 24 H 0.11 5.54 5.04 -2.91 -0.01 5.53 16 25 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 26 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 27 H 0.17 2.35 6.40 -2.91 -0.02 2.33 16 28 H 0.41 6.59 6.74 -92.71 -0.62 5.97 16 29 H 0.08 2.38 7.50 -2.39 -0.02 2.37 16 30 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.11 0.97 8.11 -2.39 -0.02 0.95 16 Total: -1.00 -78.31 303.67 2.93 -75.38 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.46 Total: 13.88 kcal Atomic # 6 Polarization: -39.73 SS G_CDS: 3.61 Total: -36.12 kcal Atomic # 7 Polarization: -73.21 SS G_CDS: -2.05 Total: -75.26 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.05 Total: -25.97 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.90 Total: 47.91 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -0.93 Total: 0.18 kcal Total: -78.31 2.93 -75.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712274935.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.111 kcal (2) G-P(sol) polarization free energy of solvation -78.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds