Wall clock time and date at job start Mon Mar 30 2020 02:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34778 * 120.00232 * 2 1 4 4 O 1.21603 * 120.00163 * 184.12734 * 3 2 1 5 5 C 1.47427 * 119.99621 * 4.12196 * 3 2 1 6 6 C 1.39676 * 120.21716 * 310.31166 * 5 3 2 7 7 C 1.37809 * 119.94219 * 180.02562 * 6 5 3 8 8 C 1.38666 * 120.37652 * 359.97092 * 7 6 5 9 9 C 1.37907 * 120.44049 * 0.02562 * 8 7 6 10 10 C 1.39117 * 120.04886 * 359.97438 * 9 8 7 11 11 S 1.76200 * 120.18816 * 179.97438 * 10 9 8 12 12 C 1.76199 * 99.99902 * 351.99725 * 11 10 9 13 13 H 1.07997 * 120.00510 * 4.21409 * 12 11 10 14 14 C 1.38807 * 120.00086 * 184.21463 * 12 11 10 15 15 N 1.31553 * 119.99861 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00368 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46903 * 89.99668 * 16 14 12 18 18 H 1.48495 * 109.47343 * 209.99725 * 16 14 12 19 19 H 1.48506 * 109.46883 * 330.00075 * 16 14 12 20 20 C 1.46504 * 119.99847 * 180.02562 * 2 1 3 21 21 C 1.53001 * 117.50107 * 8.73992 * 20 2 1 22 22 C 1.53001 * 117.49540 * 300.08036 * 20 2 1 23 23 H 1.08997 * 109.47614 * 93.73644 * 1 2 3 24 24 H 1.09005 * 109.47129 * 213.73903 * 1 2 3 25 25 H 1.08993 * 109.47063 * 333.72959 * 1 2 3 26 26 H 1.08002 * 120.03207 * 359.97438 * 6 5 3 27 27 H 1.07998 * 119.81446 * 179.97438 * 7 6 5 28 28 H 1.08003 * 119.77245 * 179.74931 * 8 7 6 29 29 H 1.08000 * 119.97721 * 179.97438 * 9 8 7 30 30 H 0.96996 * 120.00195 * 179.97438 * 15 14 12 31 31 H 1.09002 * 115.54784 * 154.41519 * 20 2 1 32 32 H 1.09007 * 117.49475 * 0.02562 * 21 20 2 33 33 H 1.08996 * 117.49616 * 145.02167 * 21 20 2 34 34 H 1.09005 * 117.49843 * 214.97707 * 22 20 2 35 35 H 1.08997 * 117.50345 * 359.97438 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3526 1.1685 -0.0758 5 6 1.4047 2.4423 0.0918 6 6 0.3219 2.6924 -0.7544 7 6 -0.3602 3.8865 -0.6641 8 6 0.0216 4.8436 0.2638 9 6 1.0882 4.6130 1.1070 10 6 1.7895 3.4139 1.0313 11 16 3.1533 3.1157 2.1064 12 6 3.3113 4.7060 2.8484 13 1 2.5980 5.4832 2.6171 14 6 4.3526 4.9600 3.7304 15 7 5.2212 4.0132 4.0127 16 14 4.5206 6.6461 4.5166 17 1 3.7622 6.6749 5.7931 18 1 5.9538 6.9262 4.7859 19 1 3.9791 7.6778 3.5958 20 6 2.1975 -1.2688 -0.0006 21 6 1.3891 -2.5512 -0.2074 22 6 1.9616 -2.2212 1.1734 23 1 -0.3634 -0.0670 -1.0254 24 1 -0.3634 -0.8546 0.5708 25 1 -0.3633 0.9215 0.4548 26 1 0.0199 1.9510 -1.4794 27 1 -1.1968 4.0779 -1.3196 28 1 -0.5173 5.7777 0.3234 29 1 1.3794 5.3639 1.8266 30 1 5.9491 4.1907 4.6287 31 1 3.2007 -1.2322 -0.4252 32 1 0.3122 -2.4508 -0.3434 33 1 1.8606 -3.3584 -0.7678 34 1 2.8095 -2.8116 1.5208 35 1 1.2617 -1.9036 1.9464 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729843206.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:11 Heat of formation + Delta-G solvation = 28.646545 kcal Electronic energy + Delta-G solvation = -18856.945454 eV Core-core repulsion = 15947.489096 eV Total energy + Delta-G solvation = -2909.456358 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.90609 -37.90278 -36.73553 -33.64054 -32.77306 -30.44459 -30.31151 -26.89791 -25.86724 -23.93116 -22.37554 -22.03268 -21.27774 -19.25233 -17.94477 -17.06751 -16.51020 -16.00236 -15.21751 -15.12578 -14.65443 -14.54149 -13.88716 -13.59291 -13.19259 -12.96309 -12.70065 -12.40890 -12.29383 -11.98533 -11.66364 -11.47890 -11.21015 -11.17176 -11.03004 -10.86325 -10.49304 -10.34013 -9.81671 -9.59176 -9.44322 -8.78084 -8.49325 -8.32358 -8.20122 -6.56484 -6.49351 -4.20314 1.61633 1.97418 3.06291 3.09017 3.12147 3.18775 3.27613 3.37497 3.91448 4.01499 4.33215 4.76352 4.92433 4.93055 4.98949 5.08580 5.10626 5.22977 5.37177 5.52091 5.55559 5.59167 5.78018 5.83283 5.89579 6.04460 6.09961 6.10697 6.33239 6.54523 6.77536 6.85304 6.99037 7.10084 7.41861 7.55626 7.67455 8.13646 8.64506 8.97042 10.56306 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.019379 B = 0.005931 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.518654 B = 4719.855621 C = 5881.850113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.593 5.593 3 C 0.570 3.430 4 O -0.510 6.510 5 C -0.163 4.163 6 C -0.068 4.068 7 C -0.181 4.181 8 C -0.079 4.079 9 C -0.152 4.152 10 C -0.047 4.047 11 S 0.106 5.894 12 C -0.569 4.569 13 H 0.094 0.906 14 C 0.080 3.920 15 N -0.859 5.859 16 Si 0.924 3.076 17 H -0.273 1.273 18 H -0.279 1.279 19 H -0.267 1.267 20 C 0.088 3.912 21 C -0.190 4.190 22 C -0.193 4.193 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.085 0.915 26 H 0.116 0.884 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.139 0.861 30 H 0.275 0.725 31 H 0.133 0.867 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.237 -7.484 -6.927 15.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.326 5.326 3 C 0.359 3.641 4 O -0.384 6.384 5 C -0.177 4.177 6 C -0.088 4.088 7 C -0.205 4.205 8 C -0.101 4.101 9 C -0.178 4.178 10 C -0.166 4.166 11 S 0.367 5.633 12 C -0.715 4.715 13 H 0.112 0.888 14 C -0.131 4.131 15 N -0.492 5.492 16 Si 0.749 3.251 17 H -0.199 1.199 18 H -0.204 1.204 19 H -0.192 1.192 20 C -0.016 4.016 21 C -0.228 4.228 22 C -0.232 4.232 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.104 0.896 26 H 0.134 0.866 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.157 0.843 30 H 0.085 0.915 31 H 0.150 0.850 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.423 -8.531 -6.413 14.237 hybrid contribution -0.792 2.067 0.283 2.232 sum -10.215 -6.464 -6.130 13.554 Atomic orbital electron populations 1.21935 0.79892 1.03679 1.01327 1.47223 1.06359 1.04473 1.74552 1.18356 0.87130 0.83088 0.75491 1.90808 1.13365 1.86807 1.47443 1.19095 1.00761 0.95270 1.02529 1.20969 0.93491 0.97091 0.97253 1.20665 1.02542 0.95101 1.02215 1.21086 0.96055 0.98140 0.94777 1.21415 0.96785 0.97758 1.01818 1.22867 1.00675 0.95007 0.98026 1.84032 1.26884 1.16427 1.35908 1.23559 1.16972 0.99055 1.31957 0.88812 1.25118 0.93993 0.98671 0.95298 1.69975 1.13730 1.33009 1.32458 0.86066 0.77908 0.81658 0.79452 1.19859 1.20417 1.19154 1.21540 0.97392 0.80222 1.02493 1.23367 1.00308 0.98686 1.00397 1.23386 1.03919 1.03808 0.92112 0.92781 0.91732 0.89647 0.86649 0.86905 0.86907 0.84330 0.91518 0.84967 0.88419 0.88158 0.88118 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.89 8.24 59.85 0.49 1.38 16 2 N -0.59 -9.41 3.21 -175.20 -0.56 -9.97 16 3 C 0.57 11.60 6.68 -12.52 -0.08 11.51 16 4 O -0.51 -12.33 15.45 5.27 0.08 -12.25 16 5 C -0.16 -3.27 4.88 -104.75 -0.51 -3.78 16 6 C -0.07 -1.10 7.62 -39.20 -0.30 -1.39 16 7 C -0.18 -2.75 10.02 -39.58 -0.40 -3.15 16 8 C -0.08 -1.33 10.03 -39.54 -0.40 -1.73 16 9 C -0.15 -3.15 9.24 -39.38 -0.36 -3.52 16 10 C -0.05 -1.08 6.13 -38.39 -0.24 -1.31 16 11 S 0.11 2.86 19.74 -107.50 -2.12 0.74 16 12 C -0.57 -15.68 9.08 30.94 0.28 -15.40 16 13 H 0.09 2.44 4.86 -52.49 -0.25 2.18 16 14 C 0.08 2.20 5.49 -17.46 -0.10 2.10 16 15 N -0.86 -24.84 13.22 55.49 0.73 -24.10 16 16 Si 0.92 20.65 29.55 -169.99 -5.02 15.62 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 20 C 0.09 1.24 6.24 -67.93 -0.42 0.82 16 21 C -0.19 -1.91 9.73 -26.69 -0.26 -2.17 16 22 C -0.19 -2.32 10.12 -26.69 -0.27 -2.59 16 23 H 0.05 0.53 7.61 -51.93 -0.40 0.13 16 24 H 0.06 0.64 6.50 -51.93 -0.34 0.31 16 25 H 0.08 1.10 5.67 -51.93 -0.29 0.81 16 26 H 0.12 1.52 6.66 -52.49 -0.35 1.17 16 27 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 28 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 29 H 0.14 2.98 4.99 -52.49 -0.26 2.72 16 30 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.13 2.02 7.63 -51.93 -0.40 1.62 16 32 H 0.10 0.87 6.55 -51.92 -0.34 0.53 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.10 1.18 8.07 -51.93 -0.42 0.77 16 LS Contribution 305.24 15.07 4.60 4.60 Total: -1.00 -32.13 305.24 -8.73 -40.86 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -3.87 Total: 3.74 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -2.56 Total: -19.23 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.17 Total: -34.07 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.08 Total: -12.25 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -2.12 Total: 0.74 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.13 -8.73 -40.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729843206.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.504 kcal (2) G-P(sol) polarization free energy of solvation -32.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds