Wall clock time and date at job start Mon Mar 30 2020 02:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34778 * 120.00232 * 2 1 4 4 O 1.21603 * 120.00163 * 184.12734 * 3 2 1 5 5 C 1.47427 * 119.99621 * 4.12196 * 3 2 1 6 6 C 1.39676 * 120.21716 * 310.31166 * 5 3 2 7 7 C 1.37809 * 119.94219 * 180.02562 * 6 5 3 8 8 C 1.38666 * 120.37652 * 359.97092 * 7 6 5 9 9 C 1.37907 * 120.44049 * 0.02562 * 8 7 6 10 10 C 1.39117 * 120.04886 * 359.97438 * 9 8 7 11 11 S 1.76200 * 120.18816 * 179.97438 * 10 9 8 12 12 C 1.76199 * 99.99902 * 351.99725 * 11 10 9 13 13 H 1.07997 * 120.00510 * 4.21409 * 12 11 10 14 14 C 1.38807 * 120.00086 * 184.21463 * 12 11 10 15 15 N 1.31553 * 119.99861 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00368 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46903 * 89.99668 * 16 14 12 18 18 H 1.48495 * 109.47343 * 209.99725 * 16 14 12 19 19 H 1.48506 * 109.46883 * 330.00075 * 16 14 12 20 20 C 1.46504 * 119.99847 * 180.02562 * 2 1 3 21 21 C 1.53001 * 117.50107 * 8.73992 * 20 2 1 22 22 C 1.53001 * 117.49540 * 300.08036 * 20 2 1 23 23 H 1.08997 * 109.47614 * 93.73644 * 1 2 3 24 24 H 1.09005 * 109.47129 * 213.73903 * 1 2 3 25 25 H 1.08993 * 109.47063 * 333.72959 * 1 2 3 26 26 H 1.08002 * 120.03207 * 359.97438 * 6 5 3 27 27 H 1.07998 * 119.81446 * 179.97438 * 7 6 5 28 28 H 1.08003 * 119.77245 * 179.74931 * 8 7 6 29 29 H 1.08000 * 119.97721 * 179.97438 * 9 8 7 30 30 H 0.96996 * 120.00195 * 179.97438 * 15 14 12 31 31 H 1.09002 * 115.54784 * 154.41519 * 20 2 1 32 32 H 1.09007 * 117.49475 * 0.02562 * 21 20 2 33 33 H 1.08996 * 117.49616 * 145.02167 * 21 20 2 34 34 H 1.09005 * 117.49843 * 214.97707 * 22 20 2 35 35 H 1.08997 * 117.50345 * 359.97438 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3526 1.1685 -0.0758 5 6 1.4047 2.4423 0.0918 6 6 0.3219 2.6924 -0.7544 7 6 -0.3602 3.8865 -0.6641 8 6 0.0216 4.8436 0.2638 9 6 1.0882 4.6130 1.1070 10 6 1.7895 3.4139 1.0313 11 16 3.1533 3.1157 2.1064 12 6 3.3113 4.7060 2.8484 13 1 2.5980 5.4832 2.6171 14 6 4.3526 4.9600 3.7304 15 7 5.2212 4.0132 4.0127 16 14 4.5206 6.6461 4.5166 17 1 3.7622 6.6749 5.7931 18 1 5.9538 6.9262 4.7859 19 1 3.9791 7.6778 3.5958 20 6 2.1975 -1.2688 -0.0006 21 6 1.3891 -2.5512 -0.2074 22 6 1.9616 -2.2212 1.1734 23 1 -0.3634 -0.0670 -1.0254 24 1 -0.3634 -0.8546 0.5708 25 1 -0.3633 0.9215 0.4548 26 1 0.0199 1.9510 -1.4794 27 1 -1.1968 4.0779 -1.3196 28 1 -0.5173 5.7777 0.3234 29 1 1.3794 5.3639 1.8266 30 1 5.9491 4.1907 4.6287 31 1 3.2007 -1.2322 -0.4252 32 1 0.3122 -2.4508 -0.3434 33 1 1.8606 -3.3584 -0.7678 34 1 2.8095 -2.8116 1.5208 35 1 1.2617 -1.9036 1.9464 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729843206.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:10 Heat of formation + Delta-G solvation = 8.189216 kcal Electronic energy + Delta-G solvation = -18857.832550 eV Core-core repulsion = 15947.489096 eV Total energy + Delta-G solvation = -2910.343454 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.30216 -39.25968 -38.09045 -34.90557 -34.78185 -31.92886 -31.76684 -28.04780 -27.83324 -25.33811 -23.51061 -23.28216 -22.58778 -20.65989 -19.68591 -18.47524 -17.90845 -17.45452 -17.06187 -16.52941 -15.97884 -15.91872 -15.31931 -14.94306 -14.68717 -14.63758 -13.99607 -13.75685 -13.46995 -13.37244 -13.15280 -12.97130 -12.87437 -12.60908 -12.33863 -12.07261 -11.92583 -11.51956 -11.48298 -11.41560 -11.05654 -10.52570 -10.28629 -9.78380 -9.41588 -8.51961 -8.49827 -6.29416 0.13395 0.50409 1.24535 1.36824 1.44671 1.58074 1.68418 1.99296 2.17907 2.80340 2.91199 2.96515 3.16075 3.65676 3.78396 4.00556 4.04901 4.06744 4.24110 4.25948 4.58012 4.60184 4.65087 4.73102 4.81441 4.84040 4.89014 5.06527 5.09326 5.19997 5.34568 5.46080 5.51582 5.65546 5.65965 6.06837 6.14000 6.34796 6.91302 7.19042 8.58041 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.019379 B = 0.005931 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.518654 B = 4719.855621 C = 5881.850113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.583 5.583 3 C 0.557 3.443 4 O -0.568 6.568 5 C -0.167 4.167 6 C -0.061 4.061 7 C -0.148 4.148 8 C -0.073 4.073 9 C -0.170 4.170 10 C -0.067 4.067 11 S -0.011 6.011 12 C -0.575 4.575 13 H 0.101 0.899 14 C 0.020 3.980 15 N -0.907 5.907 16 Si 1.001 2.999 17 H -0.262 1.262 18 H -0.274 1.274 19 H -0.257 1.257 20 C 0.044 3.956 21 C -0.142 4.142 22 C -0.199 4.199 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.156 0.844 27 H 0.169 0.831 28 H 0.153 0.847 29 H 0.121 0.879 30 H 0.276 0.724 31 H 0.107 0.893 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.104 0.896 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.525 -7.307 -9.134 19.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.314 5.314 3 C 0.347 3.653 4 O -0.447 6.447 5 C -0.179 4.179 6 C -0.081 4.081 7 C -0.170 4.170 8 C -0.093 4.093 9 C -0.195 4.195 10 C -0.184 4.184 11 S 0.245 5.755 12 C -0.721 4.721 13 H 0.118 0.882 14 C -0.185 4.185 15 N -0.542 5.542 16 Si 0.821 3.179 17 H -0.187 1.187 18 H -0.199 1.199 19 H -0.181 1.181 20 C -0.060 4.060 21 C -0.179 4.179 22 C -0.237 4.237 23 H 0.107 0.893 24 H 0.107 0.893 25 H 0.094 0.906 26 H 0.174 0.826 27 H 0.186 0.814 28 H 0.170 0.830 29 H 0.139 0.861 30 H 0.085 0.915 31 H 0.125 0.875 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.122 0.878 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.841 -8.389 -8.684 18.368 hybrid contribution 0.243 1.887 0.717 2.033 sum -13.598 -6.502 -7.967 17.049 Atomic orbital electron populations 1.22257 0.77114 1.04365 1.03846 1.47243 1.08054 1.03719 1.72431 1.18613 0.86665 0.84601 0.75434 1.90774 1.15759 1.87719 1.50414 1.19407 1.01582 0.94674 1.02234 1.21444 0.91613 0.98600 0.96402 1.21345 1.02168 0.93068 1.00455 1.21534 0.94289 1.00144 0.93378 1.21452 0.98409 0.96707 1.02944 1.22719 0.99714 0.97125 0.98838 1.84182 1.32399 1.18436 1.40497 1.23809 1.17395 0.98906 1.32038 0.88171 1.26235 0.93438 1.03031 0.95828 1.70138 1.14745 1.35472 1.33804 0.84925 0.78080 0.76222 0.78664 1.18660 1.19919 1.18057 1.21667 0.97774 0.81065 1.05492 1.23490 1.01088 0.95574 0.97790 1.23437 1.04418 1.03065 0.92815 0.89303 0.89350 0.90586 0.82612 0.81395 0.82983 0.86139 0.91463 0.87525 0.86052 0.85960 0.87790 0.88861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.33 8.24 127.77 1.05 2.38 16 2 N -0.58 -18.16 3.21 -826.45 -2.65 -20.81 16 3 C 0.56 23.44 6.68 86.66 0.58 24.02 16 4 O -0.57 -29.67 15.45 -4.04 -0.06 -29.74 16 5 C -0.17 -6.67 4.88 -19.95 -0.10 -6.76 16 6 C -0.06 -1.71 7.62 22.52 0.17 -1.54 16 7 C -0.15 -3.61 10.02 22.27 0.22 -3.38 16 8 C -0.07 -2.17 10.03 22.29 0.22 -1.94 16 9 C -0.17 -7.04 9.24 22.40 0.21 -6.83 16 10 C -0.07 -3.19 6.13 23.04 0.14 -3.05 16 11 S -0.01 -0.65 19.74 -56.49 -1.11 -1.77 16 12 C -0.57 -33.75 9.08 67.96 0.62 -33.13 16 13 H 0.10 5.49 4.86 -2.91 -0.01 5.48 16 14 C 0.02 1.16 5.49 84.87 0.47 1.63 16 15 N -0.91 -56.01 13.22 21.65 0.29 -55.73 16 16 Si 1.00 43.92 29.55 68.60 2.03 45.95 16 17 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 19 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 20 C 0.04 1.25 6.24 44.99 0.28 1.53 16 21 C -0.14 -2.41 9.73 30.62 0.30 -2.12 16 22 C -0.20 -4.63 10.12 30.62 0.31 -4.32 16 23 H 0.09 1.24 7.61 -2.39 -0.02 1.22 16 24 H 0.09 1.40 6.50 -2.38 -0.02 1.39 16 25 H 0.08 1.71 5.67 -2.39 -0.01 1.70 16 26 H 0.16 3.17 6.66 -2.91 -0.02 3.15 16 27 H 0.17 2.49 8.06 -2.91 -0.02 2.46 16 28 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 29 H 0.12 5.36 4.99 -2.91 -0.01 5.34 16 30 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 31 H 0.11 3.51 7.63 -2.39 -0.02 3.49 16 32 H 0.12 1.53 6.55 -2.38 -0.02 1.52 16 33 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 35 H 0.09 2.22 8.07 -2.39 -0.02 2.21 16 Total: -1.00 -80.66 305.24 4.07 -76.59 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 1.12 Total: 19.02 kcal Atomic # 6 Polarization: -37.99 SS G_CDS: 4.47 Total: -33.52 kcal Atomic # 7 Polarization: -74.17 SS G_CDS: -2.37 Total: -76.54 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.06 Total: -29.74 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -0.65 SS G_CDS: -1.11 Total: -1.77 kcal Total: -80.66 4.07 -76.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729843206.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.778 kcal (2) G-P(sol) polarization free energy of solvation -80.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds