Wall clock time and date at job start Mon Mar 30 2020 01:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31277 * 1 3 3 Si 1.86798 * 120.00255 * 2 1 4 4 H 1.48508 * 109.46863 * 269.99823 * 3 2 1 5 5 H 1.48502 * 109.47202 * 29.99484 * 3 2 1 6 6 H 1.48501 * 109.47233 * 150.00130 * 3 2 1 7 7 C 1.39196 * 119.99581 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99661 * 201.68031 * 7 2 1 9 9 N 1.36626 * 119.99916 * 21.67974 * 7 2 1 10 10 C 1.46500 * 120.00292 * 16.73126 * 9 7 2 11 11 C 1.50700 * 109.46948 * 263.92057 * 10 9 7 12 12 O 1.20830 * 119.99906 * 359.97438 * 11 10 9 13 13 O 1.34228 * 119.99778 * 179.97438 * 11 10 9 14 14 C 1.34784 * 119.99558 * 196.72447 * 9 7 2 15 15 O 1.21736 * 120.00018 * 0.02562 * 14 9 7 16 16 C 1.46415 * 119.99459 * 180.02562 * 14 9 7 17 17 C 1.34861 * 119.99536 * 180.02562 * 16 14 9 18 18 C 1.47272 * 119.99783 * 179.97438 * 17 16 14 19 19 C 1.39886 * 120.13803 * 179.72334 * 18 17 16 20 20 N 1.31966 * 119.82503 * 179.70740 * 19 18 17 21 21 C 1.32222 * 120.10998 * 0.57181 * 20 19 18 22 22 C 1.38637 * 120.28578 * 359.70339 * 21 20 19 23 23 N 1.31856 * 120.17167 * 0.02562 * 22 21 20 24 24 H 0.97006 * 119.99739 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46532 * 23.91931 * 10 9 7 26 26 H 1.09000 * 109.46804 * 143.91858 * 10 9 7 27 27 H 0.96698 * 116.99746 * 180.02562 * 13 11 10 28 28 H 1.08001 * 120.00473 * 0.02562 * 16 14 9 29 29 H 1.08003 * 120.00735 * 359.97438 * 17 16 14 30 30 H 1.08004 * 120.08614 * 359.97271 * 19 18 17 31 31 H 1.08003 * 119.85516 * 179.68558 * 21 20 19 32 32 H 1.07997 * 119.91365 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2468 1.6177 0.0000 4 1 2.4944 2.0463 -1.4002 5 1 1.4443 2.6527 0.6999 6 1 3.5444 1.4401 0.7000 7 6 2.0087 -1.2055 0.0005 8 1 3.0314 -1.2385 0.3461 9 7 1.3979 -2.3470 -0.4361 10 6 0.1724 -2.2628 -1.2343 11 6 -1.0255 -2.4229 -0.3339 12 8 -0.8712 -2.5906 0.8527 13 8 -2.2637 -2.3791 -0.8502 14 6 1.9231 -3.5506 -0.1324 15 8 2.9413 -3.6206 0.5311 16 6 1.2689 -4.7739 -0.6008 17 6 1.7941 -5.9782 -0.2966 18 6 1.1358 -7.2087 -0.7672 19 6 1.6812 -8.4593 -0.4583 20 7 1.0830 -9.5581 -0.8782 21 6 -0.0227 -9.4774 -1.5987 22 6 -0.5641 -8.2402 -1.9124 23 7 0.0214 -7.1353 -1.4941 24 1 -0.4850 0.8401 -0.0004 25 1 0.1275 -1.2930 -1.7297 26 1 0.1719 -3.0542 -1.9838 27 1 -3.0006 -2.4863 -0.2333 28 1 0.3658 -4.7118 -1.1899 29 1 2.6974 -6.0404 0.2921 30 1 2.5871 -8.5255 0.1261 31 1 -0.5061 -10.3792 -1.9446 32 1 -1.4672 -8.1813 -2.5017 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739077829.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:35 Heat of formation + Delta-G solvation = -41.010224 kcal Electronic energy + Delta-G solvation = -20888.153031 eV Core-core repulsion = 17429.382915 eV Total energy + Delta-G solvation = -3458.770116 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.88190 -39.51952 -38.20462 -35.43025 -34.80835 -34.48139 -33.16426 -31.97617 -30.18079 -27.83631 -25.92857 -24.71411 -24.07368 -21.57009 -20.98157 -18.55217 -17.56718 -17.24142 -16.95734 -16.90294 -16.60640 -15.68937 -15.54445 -14.76345 -14.73735 -14.54634 -14.17302 -13.62360 -13.35022 -12.93239 -12.70817 -12.09055 -11.87039 -11.74025 -11.62952 -11.39604 -11.29639 -11.01816 -10.52551 -10.48315 -10.44152 -10.17288 -9.73157 -9.18651 -9.09509 -8.64392 -8.36229 -8.07481 -6.66355 -3.99200 0.41487 1.09231 2.18542 3.09065 3.15660 3.21236 3.41803 3.70093 3.85219 4.02319 4.06743 4.26325 4.33658 4.42592 4.63929 4.87216 5.00610 5.19688 5.30559 5.45738 5.57936 5.80677 5.87840 6.34126 6.39032 6.45259 6.67037 6.72991 7.30293 7.34101 7.44578 7.79147 7.85058 8.21554 8.93327 8.94733 9.13018 9.73318 10.40914 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.027507 B = 0.004814 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.686096 B = 5815.442482 C = 6573.331357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.029 3.971 3 Si 0.935 3.065 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.297 4.297 8 H 0.114 0.886 9 N -0.409 5.409 10 C 0.138 3.862 11 C 0.490 3.510 12 O -0.501 6.501 13 O -0.533 6.533 14 C 0.463 3.537 15 O -0.582 6.582 16 C -0.104 4.104 17 C -0.106 4.106 18 C 0.126 3.874 19 C 0.056 3.944 20 N -0.438 5.438 21 C 0.026 3.974 22 C 0.060 3.940 23 N -0.441 5.441 24 H 0.276 0.724 25 H 0.130 0.870 26 H 0.085 0.915 27 H 0.393 0.607 28 H 0.124 0.876 29 H 0.146 0.854 30 H 0.172 0.828 31 H 0.166 0.834 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.337 -10.066 -6.603 12.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.176 4.176 3 Si 0.761 3.239 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.425 4.425 8 H 0.132 0.868 9 N -0.125 5.125 10 C 0.012 3.988 11 C 0.330 3.670 12 O -0.386 6.386 13 O -0.344 6.344 14 C 0.256 3.744 15 O -0.467 6.467 16 C -0.127 4.127 17 C -0.129 4.129 18 C -0.011 4.011 19 C -0.105 4.105 20 N -0.152 5.152 21 C -0.133 4.133 22 C -0.102 4.102 23 N -0.157 5.157 24 H 0.086 0.914 25 H 0.147 0.853 26 H 0.102 0.898 27 H 0.250 0.750 28 H 0.142 0.858 29 H 0.163 0.837 30 H 0.189 0.811 31 H 0.183 0.817 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.610 -9.911 -6.204 12.237 hybrid contribution -0.640 0.840 0.477 1.158 sum -4.250 -9.071 -5.727 11.539 Atomic orbital electron populations 1.69767 1.06379 1.28608 1.45559 1.25415 0.95352 1.00463 0.96334 0.85770 0.79607 0.79929 0.78605 1.19961 1.20856 1.19022 1.19886 0.98198 0.83345 1.41033 0.86792 1.43422 1.19694 1.05726 1.43665 1.20808 0.81425 1.05104 0.91450 1.23675 0.83414 0.71043 0.88878 1.90630 1.85895 1.44695 1.17393 1.84508 1.17232 1.86273 1.46345 1.17911 0.88071 0.83150 0.85290 1.90651 1.26748 1.86310 1.43040 1.23480 0.98935 0.93550 0.96784 1.21762 1.00304 0.88852 1.01934 1.21176 0.91527 0.94998 0.93421 1.23855 1.00338 0.87888 0.98440 1.68363 1.07733 1.31682 1.07395 1.23740 0.93725 0.99103 0.96782 1.23758 0.99923 0.88916 0.97578 1.68586 1.07538 1.31572 1.07970 0.91353 0.85261 0.89755 0.75025 0.85775 0.83660 0.81071 0.81707 0.81456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.88 9.28 55.51 0.52 -21.37 16 2 C 0.03 0.74 4.87 -17.43 -0.08 0.65 16 3 Si 0.94 19.62 29.61 -169.99 -5.03 14.59 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.30 -7.94 9.33 -15.06 -0.14 -8.08 16 8 H 0.11 3.18 7.37 -52.48 -0.39 2.80 16 9 N -0.41 -10.22 2.17 -117.69 -0.26 -10.48 16 10 C 0.14 2.97 4.84 -5.19 -0.03 2.95 16 11 C 0.49 10.81 6.23 36.01 0.22 11.03 16 12 O -0.50 -13.07 16.78 -18.75 -0.31 -13.39 16 13 O -0.53 -9.47 13.42 -39.25 -0.53 -10.00 16 14 C 0.46 11.46 7.34 -12.97 -0.10 11.36 16 15 O -0.58 -16.07 15.87 5.16 0.08 -15.99 16 16 C -0.10 -2.09 8.63 -37.49 -0.32 -2.42 16 17 C -0.11 -1.87 9.46 -37.11 -0.35 -2.22 16 18 C 0.13 1.94 6.70 -82.96 -0.56 1.38 16 19 C 0.06 0.74 10.98 -16.88 -0.19 0.56 16 20 N -0.44 -5.68 10.49 -12.62 -0.13 -5.81 16 21 C 0.03 0.27 11.22 -17.24 -0.19 0.08 16 22 C 0.06 0.68 11.22 -17.39 -0.20 0.48 16 23 N -0.44 -6.63 9.51 -9.72 -0.09 -6.73 16 24 H 0.28 6.61 8.31 -40.82 -0.34 6.27 16 25 H 0.13 2.82 6.37 -51.93 -0.33 2.49 16 26 H 0.08 1.50 6.45 -51.93 -0.34 1.17 16 27 H 0.39 5.38 9.10 45.56 0.41 5.80 16 28 H 0.12 2.34 5.61 -52.49 -0.29 2.05 16 29 H 0.15 2.50 7.52 -52.48 -0.39 2.11 16 30 H 0.17 1.84 8.06 -52.48 -0.42 1.42 16 31 H 0.17 1.13 8.06 -52.48 -0.42 0.71 16 32 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 294.16 15.07 4.43 4.43 Total: -1.00 -34.25 294.16 -4.98 -39.22 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -1.73 Total: 9.74 kcal Atomic # 6 Polarization: 17.70 SS G_CDS: -1.93 Total: 15.77 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 0.04 Total: -44.39 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -0.76 Total: -39.37 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -34.25 -4.98 -39.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739077829.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.786 kcal (2) G-P(sol) polarization free energy of solvation -34.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds