Wall clock time and date at job start Mon Mar 30 2020 01:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31277 * 1 3 3 Si 1.86798 * 120.00255 * 2 1 4 4 H 1.48508 * 109.46863 * 269.99823 * 3 2 1 5 5 H 1.48502 * 109.47202 * 29.99484 * 3 2 1 6 6 H 1.48501 * 109.47233 * 150.00130 * 3 2 1 7 7 C 1.39196 * 119.99581 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99661 * 201.68031 * 7 2 1 9 9 N 1.36626 * 119.99916 * 21.67974 * 7 2 1 10 10 C 1.46500 * 120.00292 * 16.73126 * 9 7 2 11 11 C 1.50700 * 109.46948 * 263.92057 * 10 9 7 12 12 O 1.20830 * 119.99906 * 359.97438 * 11 10 9 13 13 O 1.34228 * 119.99778 * 179.97438 * 11 10 9 14 14 C 1.34784 * 119.99558 * 196.72447 * 9 7 2 15 15 O 1.21736 * 120.00018 * 0.02562 * 14 9 7 16 16 C 1.46415 * 119.99459 * 180.02562 * 14 9 7 17 17 C 1.34861 * 119.99536 * 180.02562 * 16 14 9 18 18 C 1.47272 * 119.99783 * 179.97438 * 17 16 14 19 19 C 1.39886 * 120.13803 * 179.72334 * 18 17 16 20 20 N 1.31966 * 119.82503 * 179.70740 * 19 18 17 21 21 C 1.32222 * 120.10998 * 0.57181 * 20 19 18 22 22 C 1.38637 * 120.28578 * 359.70339 * 21 20 19 23 23 N 1.31856 * 120.17167 * 0.02562 * 22 21 20 24 24 H 0.97006 * 119.99739 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46532 * 23.91931 * 10 9 7 26 26 H 1.09000 * 109.46804 * 143.91858 * 10 9 7 27 27 H 0.96698 * 116.99746 * 180.02562 * 13 11 10 28 28 H 1.08001 * 120.00473 * 0.02562 * 16 14 9 29 29 H 1.08003 * 120.00735 * 359.97438 * 17 16 14 30 30 H 1.08004 * 120.08614 * 359.97271 * 19 18 17 31 31 H 1.08003 * 119.85516 * 179.68558 * 21 20 19 32 32 H 1.07997 * 119.91365 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2468 1.6177 0.0000 4 1 2.4944 2.0463 -1.4002 5 1 1.4443 2.6527 0.6999 6 1 3.5444 1.4401 0.7000 7 6 2.0087 -1.2055 0.0005 8 1 3.0314 -1.2385 0.3461 9 7 1.3979 -2.3470 -0.4361 10 6 0.1724 -2.2628 -1.2343 11 6 -1.0255 -2.4229 -0.3339 12 8 -0.8712 -2.5906 0.8527 13 8 -2.2637 -2.3791 -0.8502 14 6 1.9231 -3.5506 -0.1324 15 8 2.9413 -3.6206 0.5311 16 6 1.2689 -4.7739 -0.6008 17 6 1.7941 -5.9782 -0.2966 18 6 1.1358 -7.2087 -0.7672 19 6 1.6812 -8.4593 -0.4583 20 7 1.0830 -9.5581 -0.8782 21 6 -0.0227 -9.4774 -1.5987 22 6 -0.5641 -8.2402 -1.9124 23 7 0.0214 -7.1353 -1.4941 24 1 -0.4850 0.8401 -0.0004 25 1 0.1275 -1.2930 -1.7297 26 1 0.1719 -3.0542 -1.9838 27 1 -3.0006 -2.4863 -0.2333 28 1 0.3658 -4.7118 -1.1899 29 1 2.6974 -6.0404 0.2921 30 1 2.5871 -8.5255 0.1261 31 1 -0.5061 -10.3792 -1.9446 32 1 -1.4672 -8.1813 -2.5017 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739077829.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:35 Heat of formation + Delta-G solvation = -66.805939 kcal Electronic energy + Delta-G solvation = -20889.271617 eV Core-core repulsion = 17429.382915 eV Total energy + Delta-G solvation = -3459.888702 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.91490 -41.26218 -39.98651 -37.14791 -36.45246 -35.82736 -34.39490 -33.82485 -31.43787 -29.58862 -27.53332 -25.98739 -25.24999 -23.13972 -22.56293 -20.09642 -19.14120 -18.91153 -18.61626 -18.09602 -17.78075 -17.38586 -16.87519 -16.36722 -16.25261 -15.90767 -15.79332 -15.19084 -14.84050 -14.56539 -13.83274 -13.73416 -13.58733 -13.44883 -12.98165 -12.66012 -12.57075 -12.48286 -12.39835 -12.18465 -12.14618 -11.59184 -11.35298 -11.01322 -10.59855 -10.08164 -9.97766 -9.61475 -8.53290 -5.98573 -0.73001 0.10482 0.82796 1.42424 1.43903 1.55622 1.70432 2.09177 2.30236 2.53971 2.81343 2.86673 3.04608 3.17199 3.34655 3.50312 3.73649 4.03390 4.16400 4.24370 4.32501 4.51963 4.61282 4.67828 4.85096 5.20319 5.26925 5.38561 5.43447 5.91809 5.96066 6.30101 6.32913 6.79508 7.02155 7.20595 7.40328 7.86048 8.53127 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.027507 B = 0.004814 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.686096 B = 5815.442482 C = 6573.331357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.002 3.998 3 Si 0.999 3.001 4 H -0.256 1.256 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.343 4.343 8 H 0.085 0.915 9 N -0.424 5.424 10 C 0.138 3.862 11 C 0.498 3.502 12 O -0.548 6.548 13 O -0.516 6.516 14 C 0.458 3.542 15 O -0.627 6.627 16 C -0.141 4.141 17 C -0.063 4.063 18 C 0.089 3.911 19 C 0.064 3.936 20 N -0.457 5.457 21 C 0.053 3.947 22 C 0.058 3.942 23 N -0.462 5.462 24 H 0.280 0.720 25 H 0.125 0.875 26 H 0.119 0.881 27 H 0.414 0.586 28 H 0.137 0.863 29 H 0.143 0.857 30 H 0.190 0.810 31 H 0.211 0.789 32 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.997 -12.153 -8.228 15.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.201 4.201 3 Si 0.822 3.178 4 H -0.181 1.181 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.470 4.470 8 H 0.103 0.897 9 N -0.140 5.140 10 C 0.013 3.987 11 C 0.340 3.660 12 O -0.437 6.437 13 O -0.328 6.328 14 C 0.252 3.748 15 O -0.517 6.517 16 C -0.163 4.163 17 C -0.085 4.085 18 C -0.046 4.046 19 C -0.095 4.095 20 N -0.171 5.171 21 C -0.107 4.107 22 C -0.105 4.105 23 N -0.178 5.178 24 H 0.090 0.910 25 H 0.142 0.858 26 H 0.137 0.863 27 H 0.274 0.726 28 H 0.155 0.845 29 H 0.161 0.839 30 H 0.207 0.793 31 H 0.228 0.772 32 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -5.303 -11.991 -7.852 15.282 hybrid contribution -0.270 1.058 0.904 1.418 sum -5.573 -10.932 -6.948 14.101 Atomic orbital electron populations 1.69831 1.07127 1.29363 1.45654 1.26135 0.96147 1.02686 0.95139 0.84854 0.77756 0.75971 0.79256 1.18099 1.20305 1.20095 1.19747 0.97797 0.85187 1.44279 0.89740 1.43491 1.20856 1.05350 1.44267 1.20929 0.80227 1.06070 0.91491 1.23686 0.84500 0.69705 0.88064 1.90612 1.86743 1.47072 1.19297 1.84438 1.16591 1.85376 1.46370 1.18657 0.87392 0.84496 0.84281 1.90588 1.28700 1.87296 1.45076 1.23106 1.00453 0.92189 1.00597 1.21984 0.98920 0.89425 0.98218 1.20891 0.93072 0.94436 0.96241 1.24088 1.00577 0.87208 0.97595 1.68514 1.08944 1.31140 1.08461 1.24579 0.91979 1.00650 0.93515 1.24476 1.00729 0.88090 0.97155 1.68498 1.07491 1.33825 1.07936 0.91011 0.85762 0.86301 0.72630 0.84542 0.83915 0.79330 0.77204 0.77529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.27 9.28 21.70 0.20 -45.06 16 2 C 0.00 0.11 4.87 85.01 0.41 0.53 16 3 Si 1.00 41.12 29.61 68.60 2.03 43.15 16 4 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 5 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.34 -19.32 9.33 84.18 0.79 -18.54 16 8 H 0.08 5.10 7.37 -2.91 -0.02 5.08 16 9 N -0.42 -22.15 2.17 -644.45 -1.40 -23.54 16 10 C 0.14 6.02 4.84 85.63 0.41 6.43 16 11 C 0.50 22.03 6.23 71.24 0.44 22.48 16 12 O -0.55 -29.23 16.78 21.95 0.37 -28.86 16 13 O -0.52 -17.59 13.42 -51.40 -0.69 -18.28 16 14 C 0.46 23.78 7.34 86.37 0.63 24.41 16 15 O -0.63 -36.81 15.87 -4.46 -0.07 -36.88 16 16 C -0.14 -5.78 8.63 23.62 0.20 -5.58 16 17 C -0.06 -2.24 9.46 23.87 0.23 -2.02 16 18 C 0.09 2.61 6.70 41.70 0.28 2.89 16 19 C 0.06 1.56 10.98 85.07 0.93 2.49 16 20 N -0.46 -10.18 10.49 -193.85 -2.03 -12.21 16 21 C 0.05 0.87 11.22 84.73 0.95 1.82 16 22 C 0.06 1.06 11.22 84.78 0.95 2.01 16 23 N -0.46 -12.71 9.51 -184.68 -1.76 -14.47 16 24 H 0.28 13.43 8.31 -92.70 -0.77 12.66 16 25 H 0.12 5.50 6.37 -2.39 -0.02 5.48 16 26 H 0.12 4.21 6.45 -2.39 -0.02 4.20 16 27 H 0.41 10.58 9.10 -74.06 -0.67 9.91 16 28 H 0.14 5.15 5.61 -2.91 -0.02 5.13 16 29 H 0.14 5.04 7.52 -2.91 -0.02 5.01 16 30 H 0.19 3.70 8.06 -2.91 -0.02 3.67 16 31 H 0.21 1.48 8.06 -2.91 -0.02 1.46 16 32 H 0.21 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -78.49 294.16 3.41 -75.09 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.52 Total: 24.14 kcal Atomic # 6 Polarization: 30.69 SS G_CDS: 6.24 Total: 36.93 kcal Atomic # 7 Polarization: -90.30 SS G_CDS: -4.98 Total: -95.29 kcal Atomic # 8 Polarization: -83.63 SS G_CDS: -0.39 Total: -84.02 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -78.49 3.41 -75.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739077829.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.280 kcal (2) G-P(sol) polarization free energy of solvation -78.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds