Wall clock time and date at job start Mon Mar 30 2020 02:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.46977 * 2 1 4 4 C 1.50700 * 109.46979 * 119.99991 * 2 1 3 5 5 H 1.08001 * 120.00377 * 119.99538 * 4 2 1 6 6 C 1.37875 * 119.99924 * 300.00538 * 4 2 1 7 7 N 1.31510 * 120.00089 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99853 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47169 * 89.99441 * 8 6 4 10 10 H 1.48501 * 109.47084 * 209.99508 * 8 6 4 11 11 H 1.48498 * 109.47185 * 329.99583 * 8 6 4 12 12 O 1.45201 * 109.47269 * 239.99894 * 2 1 3 13 13 C 1.34828 * 116.99991 * 90.00033 * 12 2 1 14 14 O 1.21568 * 120.00046 * 359.97438 * 13 12 2 15 15 C 1.47039 * 120.00038 * 180.02562 * 13 12 2 16 16 C 1.38932 * 120.90939 * 359.97438 * 15 13 12 17 17 C 1.39889 * 119.42269 * 180.02562 * 16 15 13 18 18 C 1.35043 * 121.27866 * 359.97438 * 17 16 15 19 19 N 1.36245 * 121.59457 * 359.97438 * 18 17 16 20 20 C 1.36376 * 133.87473 * 179.97438 * 19 18 17 21 21 O 1.35711 * 126.33961 * 359.97438 * 20 19 18 22 22 N 1.31095 * 107.32535 * 180.02562 * 20 19 18 23 23 N 1.28699 * 110.31439 * 0.02562 * 22 20 19 24 24 C 1.31456 * 109.67353 * 359.97438 * 23 22 20 25 25 H 1.08998 * 109.46977 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.46956 * 300.00045 * 1 2 3 27 27 H 1.09005 * 109.46458 * 60.00040 * 1 2 3 28 28 H 0.97005 * 119.99939 * 180.02562 * 7 6 4 29 29 H 1.08003 * 120.28963 * 0.02562 * 16 15 13 30 30 H 1.08001 * 119.36352 * 179.97438 * 17 16 15 31 31 H 1.07999 * 119.20485 * 180.27515 * 18 17 16 32 32 H 0.96703 * 114.00138 * 89.99736 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.6304 -0.5441 4.4119 10 1 1.3443 -0.9491 5.1123 11 1 2.4880 -2.5654 3.7122 12 8 2.0141 -0.6845 -1.1855 13 6 2.2182 0.0673 -2.2860 14 8 1.9970 1.2623 -2.2553 15 6 2.7071 -0.5583 -3.5235 16 6 2.9655 -1.9223 -3.5799 17 6 3.4304 -2.4849 -4.7732 18 6 3.6328 -1.7280 -5.8731 19 7 3.3938 -0.3867 -5.8705 20 6 3.5075 0.5955 -6.8097 21 8 3.9287 0.4389 -8.0902 22 7 3.1356 1.7193 -6.2463 23 7 2.7972 1.5146 -5.0216 24 6 2.9342 0.2397 -4.7318 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5139 -0.8901 28 1 0.7093 1.1617 3.4844 29 1 2.8088 -2.5428 -2.7099 30 1 3.6313 -3.5452 -4.8158 31 1 3.9883 -2.1980 -6.7782 32 1 3.2182 0.2452 -8.7171 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766281981.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:39 Heat of formation + Delta-G solvation = -30.517844 kcal Electronic energy + Delta-G solvation = -20754.883011 eV Core-core repulsion = 17296.567879 eV Total energy + Delta-G solvation = -3458.315133 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.70554 -41.19648 -39.21866 -38.75877 -37.53257 -35.37951 -34.82239 -32.34648 -31.62882 -30.18564 -27.44589 -26.48744 -24.78668 -24.35043 -23.28768 -21.84870 -20.32744 -19.35914 -18.80295 -18.70938 -18.16292 -17.40078 -17.38128 -16.70416 -16.39043 -16.35882 -15.77357 -15.01875 -14.39626 -14.16606 -13.85686 -13.76899 -13.65917 -13.25501 -13.21537 -12.99311 -12.92737 -12.81238 -12.36865 -12.18310 -12.10925 -11.66333 -11.58715 -11.41090 -10.97283 -10.77976 -10.58418 -9.33712 -8.25729 -6.43251 -0.97018 -0.12528 0.61002 1.28692 1.43911 1.45174 1.47779 1.59038 1.85598 2.28456 2.42009 2.50003 2.93395 3.05480 3.15834 3.58076 3.73071 3.81272 4.32585 4.42397 4.55951 4.66090 4.70226 4.80950 4.85561 4.90954 5.11230 5.17640 5.49966 5.54607 5.62700 5.91172 6.05374 6.30007 6.62238 6.91546 7.25799 7.28155 8.82424 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.035948 B = 0.004058 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.717292 B = 6899.093325 C = 7371.078319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.219 3.781 3 H 0.002 0.998 4 C -0.544 4.544 5 H 0.077 0.923 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.987 3.013 9 H -0.275 1.275 10 H -0.279 1.279 11 H -0.255 1.255 12 O -0.347 6.347 13 C 0.494 3.506 14 O -0.537 6.537 15 C -0.138 4.138 16 C 0.035 3.965 17 C -0.141 4.141 18 C 0.112 3.888 19 N -0.407 5.407 20 C 0.337 3.663 21 O -0.416 6.416 22 N -0.289 5.289 23 N -0.313 5.313 24 C 0.230 3.770 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.017 0.983 28 H 0.270 0.730 29 H 0.184 0.816 30 H 0.227 0.773 31 H 0.232 0.768 32 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.611 -14.822 -19.787 25.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.166 3.834 3 H 0.020 0.980 4 C -0.581 4.581 5 H 0.095 0.905 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.809 3.191 9 H -0.201 1.201 10 H -0.204 1.204 11 H -0.179 1.179 12 O -0.263 6.263 13 C 0.339 3.661 14 O -0.428 6.428 15 C -0.144 4.144 16 C 0.011 3.989 17 C -0.161 4.161 18 C -0.008 4.008 19 N -0.100 5.100 20 C 0.035 3.965 21 O -0.219 6.219 22 N -0.136 5.136 23 N -0.158 5.158 24 C -0.024 4.024 25 H 0.072 0.928 26 H 0.099 0.901 27 H 0.037 0.963 28 H 0.079 0.921 29 H 0.202 0.798 30 H 0.243 0.757 31 H 0.248 0.752 32 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 5.725 -12.598 -19.533 23.938 hybrid contribution -0.234 -0.544 0.518 0.787 sum 5.492 -13.142 -19.015 23.758 Atomic orbital electron populations 1.21991 0.96705 1.00712 1.00586 1.20405 0.92064 0.92110 0.78836 0.97981 1.21300 1.33401 1.14054 0.89390 0.90493 1.25896 0.94702 0.95669 1.02351 1.70047 1.36718 1.23843 1.25205 0.85127 0.77851 0.79194 0.76891 1.20077 1.20384 1.17900 1.86480 1.76676 1.42534 1.20635 1.21011 0.75081 0.85143 0.84821 1.90871 1.49207 1.17760 1.84939 1.19012 1.13468 0.94141 0.87752 1.22623 0.84827 0.90505 1.00901 1.21568 1.01307 1.04178 0.89082 1.23025 0.95662 0.78090 1.04055 1.44203 1.44699 1.09928 1.11156 1.21676 1.04623 0.83038 0.87117 1.85010 1.36742 1.91310 1.08869 1.74529 1.15134 1.21569 1.02405 1.74922 1.22145 1.12406 1.06294 1.22497 1.01030 0.90259 0.88633 0.92788 0.90128 0.96349 0.92077 0.79831 0.75673 0.75163 0.70561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.46 9.33 71.99 0.67 -6.79 16 2 C 0.22 12.21 2.56 29.85 0.08 12.29 16 3 H 0.00 0.15 7.16 -2.39 -0.02 0.13 16 4 C -0.54 -30.36 8.90 25.60 0.23 -30.13 16 5 H 0.08 4.06 7.81 -2.91 -0.02 4.04 16 6 C 0.01 0.73 5.30 84.65 0.45 1.17 16 7 N -0.92 -53.51 11.32 21.45 0.24 -53.27 16 8 Si 0.99 42.21 29.54 68.60 2.03 44.23 16 9 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 10 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 11 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 12 O -0.35 -16.48 9.17 -57.40 -0.53 -17.01 16 13 C 0.49 22.73 7.87 70.13 0.55 23.29 16 14 O -0.54 -29.73 15.54 19.61 0.30 -29.43 16 15 C -0.14 -4.63 6.06 -18.63 -0.11 -4.74 16 16 C 0.04 0.68 9.71 22.84 0.22 0.90 16 17 C -0.14 -1.14 9.91 21.93 0.22 -0.92 16 18 C 0.11 1.07 10.93 83.27 0.91 1.98 16 19 N -0.41 -9.12 2.97 -462.33 -1.37 -10.49 16 20 C 0.34 8.23 9.41 179.66 1.69 9.92 16 21 O -0.42 -5.72 13.65 -90.32 -1.23 -6.95 16 22 N -0.29 -10.33 12.20 -173.36 -2.12 -12.44 16 23 N -0.31 -13.25 11.75 -51.49 -0.61 -13.85 16 24 C 0.23 7.94 7.75 135.69 1.05 8.99 16 25 H 0.05 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.08 4.55 6.07 -2.39 -0.01 4.53 16 27 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.27 14.69 8.31 -92.70 -0.77 13.92 16 29 H 0.18 3.08 7.66 -2.91 -0.02 3.06 16 30 H 0.23 -0.74 8.06 -2.91 -0.02 -0.76 16 31 H 0.23 -0.46 8.06 -2.91 -0.02 -0.48 16 32 H 0.43 0.65 9.06 -74.06 -0.67 -0.02 16 Total: -1.00 -89.85 293.68 3.19 -86.65 By element: Atomic # 1 Polarization: -3.90 SS G_CDS: 0.52 Total: -3.38 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 5.96 Total: 15.94 kcal Atomic # 7 Polarization: -86.21 SS G_CDS: -3.85 Total: -90.06 kcal Atomic # 8 Polarization: -51.93 SS G_CDS: -1.45 Total: -53.39 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -89.85 3.19 -86.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766281981.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.134 kcal (2) G-P(sol) polarization free energy of solvation -89.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds