Wall clock time and date at job start Mon Mar 30 2020 02:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46889 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99468 * 2 1 3 5 5 H 1.08000 * 119.99302 * 120.00101 * 4 2 1 6 6 C 1.37871 * 120.00436 * 299.72635 * 4 2 1 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46683 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47426 * 119.99743 * 8 6 4 11 11 H 1.48501 * 109.46833 * 239.99986 * 8 6 4 12 12 O 1.45196 * 109.47118 * 239.99498 * 2 1 3 13 13 C 1.34757 * 117.00017 * 90.00339 * 12 2 1 14 14 O 1.21515 * 119.99982 * 359.97438 * 13 12 2 15 15 C 1.47402 * 120.00174 * 179.97438 * 13 12 2 16 16 C 1.46441 * 120.25564 * 0.02562 * 15 13 12 17 17 C 1.35578 * 119.09940 * 179.97438 * 16 15 13 18 18 C 1.41190 * 119.48839 * 359.97438 * 17 16 15 19 19 N 1.32050 * 132.78358 * 180.02562 * 18 17 16 20 20 N 1.28590 * 109.72875 * 179.97438 * 19 18 17 21 21 C 1.31090 * 110.35083 * 359.97438 * 20 19 18 22 22 O 1.35688 * 126.33622 * 180.02562 * 21 20 19 23 23 N 1.36540 * 107.33084 * 0.02562 * 21 20 19 24 24 C 1.35991 * 133.10436 * 180.34077 * 23 21 20 25 25 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47120 * 300.00634 * 1 2 3 27 27 H 1.09002 * 109.47051 * 59.99923 * 1 2 3 28 28 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 29 29 H 1.07993 * 120.45260 * 359.95105 * 16 15 13 30 30 H 1.07996 * 120.25569 * 180.02562 * 17 16 15 31 31 H 0.96706 * 113.99660 * 269.97517 * 22 21 20 32 32 H 1.08003 * 119.80146 * 359.87493 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1315 6 6 1.7038 -0.2360 2.4828 7 7 0.9526 0.8368 2.6033 8 14 2.3270 -1.1160 4.0081 9 1 3.1463 -2.2867 3.6040 10 1 3.1572 -0.1843 4.8128 11 1 1.1722 -1.5772 4.8199 12 8 2.0140 -0.6846 -1.1855 13 6 2.2180 0.0668 -2.2854 14 8 1.9970 1.2613 -2.2548 15 6 2.7092 -0.5603 -3.5256 16 6 2.9768 -1.9994 -3.5690 17 6 3.4275 -2.5518 -4.7221 18 6 3.6284 -1.7316 -5.8536 19 7 4.0478 -1.9826 -7.0803 20 7 4.0641 -0.8941 -7.7648 21 6 3.6602 0.1130 -7.0293 22 8 3.5517 1.4059 -7.4263 23 7 3.3689 -0.3797 -5.7896 24 6 2.9108 0.1948 -4.6454 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.7218 1.1708 3.4843 29 1 2.8177 -2.6123 -2.6942 30 1 3.6305 -3.6112 -4.7750 31 1 4.3531 1.9289 -7.2865 32 1 2.7102 1.2558 -4.6205 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770131512.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:33 Heat of formation + Delta-G solvation = -31.478956 kcal Electronic energy + Delta-G solvation = -20553.136712 eV Core-core repulsion = 17094.779903 eV Total energy + Delta-G solvation = -3458.356810 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.80814 -41.44257 -39.20779 -38.79556 -37.60619 -35.38722 -34.90025 -32.73863 -31.53676 -30.20682 -27.45114 -26.67334 -24.88066 -23.75901 -23.64669 -21.93093 -20.59754 -19.55418 -18.90819 -18.42703 -18.13018 -17.81774 -17.40746 -16.85121 -16.49081 -16.08696 -15.92046 -15.09326 -14.60169 -14.33426 -14.04621 -13.75098 -13.64805 -13.42709 -13.21260 -13.05229 -12.83916 -12.79231 -12.38147 -12.28390 -12.13214 -11.74442 -11.70438 -11.60307 -10.98721 -10.87203 -10.58855 -9.37857 -8.27396 -6.43401 -0.89958 -0.35488 0.51063 0.95261 1.45544 1.46276 1.52369 1.59042 1.78076 2.18455 2.39426 2.52716 2.89362 3.04831 3.20856 3.33188 3.53524 3.60595 4.13807 4.34807 4.53479 4.56777 4.77289 4.80226 4.85084 4.86981 5.09825 5.13259 5.32826 5.49920 5.62772 5.87320 6.03306 6.21819 6.57861 6.81267 7.11450 7.27860 8.80463 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.036496 B = 0.003777 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.016356 B = 7410.533312 C = 7876.767836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.219 3.781 3 H 0.014 0.986 4 C -0.544 4.544 5 H 0.074 0.926 6 C 0.018 3.982 7 N -0.917 5.917 8 Si 0.980 3.020 9 H -0.260 1.260 10 H -0.279 1.279 11 H -0.275 1.275 12 O -0.343 6.343 13 C 0.510 3.490 14 O -0.541 6.541 15 C -0.136 4.136 16 C -0.035 4.035 17 C -0.079 4.079 18 C 0.215 3.785 19 N -0.298 5.298 20 N -0.266 5.266 21 C 0.332 3.668 22 O -0.427 6.427 23 N -0.410 5.410 24 C 0.155 3.845 25 H 0.049 0.951 26 H 0.080 0.920 27 H 0.025 0.975 28 H 0.270 0.730 29 H 0.182 0.818 30 H 0.203 0.797 31 H 0.432 0.568 32 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.307 -3.649 -12.741 14.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.166 3.834 3 H 0.032 0.968 4 C -0.582 4.582 5 H 0.092 0.908 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.804 3.196 9 H -0.184 1.184 10 H -0.205 1.205 11 H -0.200 1.200 12 O -0.259 6.259 13 C 0.355 3.645 14 O -0.433 6.433 15 C -0.141 4.141 16 C -0.060 4.060 17 C -0.099 4.099 18 C -0.035 4.035 19 N -0.144 5.144 20 N -0.115 5.115 21 C 0.032 3.968 22 O -0.230 6.230 23 N -0.103 5.103 24 C 0.031 3.969 25 H 0.068 0.932 26 H 0.098 0.902 27 H 0.044 0.956 28 H 0.079 0.921 29 H 0.199 0.801 30 H 0.220 0.780 31 H 0.294 0.706 32 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 5.153 -3.895 -14.196 15.596 hybrid contribution -0.051 1.394 2.002 2.440 sum 5.102 -2.501 -12.194 13.453 Atomic orbital electron populations 1.22017 0.96634 1.00716 1.00928 1.20458 0.92051 0.92347 0.78547 0.96834 1.21330 1.33358 1.13919 0.89573 0.90805 1.25774 0.94757 0.95603 1.02081 1.70019 1.36904 1.23462 1.25152 0.85165 0.78259 0.78516 0.77679 1.18386 1.20510 1.20033 1.86517 1.75843 1.42738 1.20793 1.20834 0.74326 0.84719 0.84651 1.90815 1.50156 1.17234 1.85120 1.19682 1.07847 0.95843 0.90755 1.22615 0.92878 0.91041 0.99427 1.20584 1.01102 1.01630 0.86581 1.22673 1.01621 0.81759 0.97429 1.74883 1.21775 1.17543 1.00177 1.74466 1.16904 0.95244 1.24861 1.21916 1.05056 0.89628 0.80240 1.84989 1.43519 1.13220 1.81222 1.44057 1.44809 1.11204 1.10197 1.21763 0.92535 1.00625 0.81937 0.93193 0.90171 0.95574 0.92069 0.80070 0.78033 0.70562 0.78530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.92 9.33 71.98 0.67 -6.25 16 2 C 0.22 11.02 2.56 29.85 0.08 11.09 16 3 H 0.01 0.78 7.16 -2.39 -0.02 0.77 16 4 C -0.54 -28.53 8.89 25.60 0.23 -28.30 16 5 H 0.07 3.74 7.81 -2.91 -0.02 3.71 16 6 C 0.02 0.92 5.30 84.65 0.45 1.37 16 7 N -0.92 -50.13 11.34 21.45 0.24 -49.88 16 8 Si 0.98 40.45 29.54 68.60 2.03 42.48 16 9 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 10 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 12 O -0.34 -14.43 9.24 -56.67 -0.52 -14.95 16 13 C 0.51 18.73 7.87 70.24 0.55 19.28 16 14 O -0.54 -22.85 15.56 19.79 0.31 -22.54 16 15 C -0.14 -3.59 5.98 -19.12 -0.11 -3.70 16 16 C -0.04 -0.73 9.84 23.79 0.23 -0.49 16 17 C -0.08 -1.40 10.09 22.38 0.23 -1.18 16 18 C 0.22 5.11 7.91 134.08 1.06 6.17 16 19 N -0.30 -8.23 12.28 -55.00 -0.68 -8.90 16 20 N -0.27 -7.36 12.19 -173.29 -2.11 -9.47 16 21 C 0.33 7.67 9.38 179.61 1.69 9.35 16 22 O -0.43 -7.04 13.65 -90.07 -1.23 -8.27 16 23 N -0.41 -9.50 2.95 -465.91 -1.38 -10.87 16 24 C 0.16 3.58 10.54 83.65 0.88 4.46 16 25 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.08 4.17 6.09 -2.38 -0.01 4.16 16 27 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 29 H 0.18 3.30 7.77 -2.91 -0.02 3.27 16 30 H 0.20 2.19 8.06 -2.91 -0.02 2.17 16 31 H 0.43 2.19 9.06 -74.05 -0.67 1.52 16 32 H 0.20 4.07 7.58 -2.91 -0.02 4.05 16 Total: -1.00 -68.26 293.90 3.13 -65.13 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: 0.52 Total: 5.50 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 5.95 Total: 11.79 kcal Atomic # 7 Polarization: -75.21 SS G_CDS: -3.92 Total: -79.14 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -1.45 Total: -45.76 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Total: -68.26 3.13 -65.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770131512.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.650 kcal (2) G-P(sol) polarization free energy of solvation -68.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds