Wall clock time and date at job start Mon Mar 30 2020 02:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50694 * 120.00029 * 2 1 4 4 N 1.46504 * 109.47226 * 125.00067 * 3 2 1 5 5 C 1.46498 * 119.99979 * 270.00079 * 4 3 2 6 6 C 1.34774 * 120.00093 * 89.99823 * 4 3 2 7 7 O 1.21612 * 119.99871 * 354.65599 * 6 4 3 8 8 C 1.47424 * 120.00000 * 174.65789 * 6 4 3 9 9 C 1.39679 * 120.21628 * 309.08133 * 8 6 4 10 10 C 1.37809 * 119.93980 * 179.97438 * 9 8 6 11 11 C 1.38656 * 120.37939 * 359.97438 * 10 9 8 12 12 C 1.37910 * 120.43913 * 0.02562 * 11 10 9 13 13 C 1.39113 * 120.05244 * 359.97396 * 12 11 10 14 14 S 1.76196 * 120.18907 * 179.97438 * 13 12 11 15 15 C 1.76201 * 100.00256 * 351.74871 * 14 13 12 16 16 H 1.08001 * 119.99518 * 5.05900 * 15 14 13 17 17 C 1.38805 * 120.00115 * 185.06377 * 15 14 13 18 18 N 1.31548 * 119.99982 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00028 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46915 * 60.00093 * 19 17 15 21 21 H 1.48493 * 109.46896 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46980 * 299.99793 * 19 17 15 23 23 H 1.08003 * 119.99792 * 359.97438 * 1 2 3 24 24 H 1.08000 * 120.00170 * 180.02562 * 1 2 3 25 25 H 1.07997 * 119.99935 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.47128 * 5.00192 * 3 2 1 27 27 H 1.08998 * 109.47247 * 244.99966 * 3 2 1 28 28 H 1.08997 * 109.47337 * 274.36906 * 5 4 3 29 29 H 1.09004 * 109.47413 * 34.37068 * 5 4 3 30 30 H 1.09003 * 109.47292 * 154.37008 * 5 4 3 31 31 H 1.08000 * 120.02714 * 0.25381 * 9 8 6 32 32 H 1.08000 * 119.80558 * 179.97438 * 10 9 8 33 33 H 1.08002 * 119.77601 * 179.97438 * 11 10 9 34 34 H 1.08002 * 119.97046 * 179.97438 * 12 11 10 35 35 H 0.97004 * 120.00518 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8649 2.4249 6 6 4.2497 0.8661 0.9824 7 8 4.5816 0.3351 -0.0601 8 6 5.2211 1.0003 2.0832 9 6 5.4233 2.2395 2.6952 10 6 6.3324 2.3583 3.7240 11 6 7.0493 1.2534 4.1575 12 6 6.8620 0.0225 3.5644 13 6 5.9489 -0.1180 2.5244 14 16 5.7074 -1.6888 1.7637 15 6 7.0119 -2.5995 2.5210 16 1 7.6123 -2.1419 3.2933 17 6 7.2680 -3.9049 2.1248 18 7 6.5365 -4.4624 1.1843 19 14 8.6515 -4.8701 2.9272 20 1 8.3962 -4.9814 4.3858 21 1 8.7173 -6.2288 2.3316 22 1 9.9404 -4.1676 2.7023 23 1 -0.5400 0.9354 0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3586 2.1316 0.0896 27 1 2.6213 1.4026 -0.9314 28 1 2.6936 2.9464 2.4360 29 1 1.5063 1.6282 2.5800 30 1 3.1533 1.4166 3.2210 31 1 4.8644 3.1027 2.3653 32 1 6.4873 3.3176 4.1954 33 1 7.7596 1.3577 4.9644 34 1 7.4248 -0.8330 3.9078 35 1 6.7152 -5.3748 0.9077 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779067307.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:22 Heat of formation + Delta-G solvation = 18.592662 kcal Electronic energy + Delta-G solvation = -18796.216450 eV Core-core repulsion = 15886.324123 eV Total energy + Delta-G solvation = -2909.892327 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.75907 -37.63694 -35.69814 -33.34884 -32.77208 -30.57817 -30.35382 -27.32607 -25.92683 -25.67040 -22.64434 -22.01969 -20.19094 -19.22167 -17.88401 -16.86037 -16.14750 -16.05580 -15.35361 -15.19569 -14.72703 -14.22661 -14.00566 -13.39762 -13.17871 -12.94757 -12.88746 -12.65484 -12.28940 -11.98702 -11.78413 -11.66281 -11.19930 -11.18377 -11.17024 -11.03718 -10.34776 -9.82359 -9.63567 -9.54400 -9.25880 -8.77997 -8.54190 -8.38896 -8.29661 -6.56153 -6.49158 -4.20392 1.63510 1.98605 2.25321 3.07175 3.13479 3.17282 3.24468 3.35294 3.49196 4.01697 4.34181 4.89894 4.92776 5.04426 5.08976 5.24368 5.29447 5.39352 5.51978 5.55332 5.60353 5.79715 5.86619 5.89581 6.03192 6.11810 6.34235 6.53130 6.61924 6.72188 6.85787 6.91255 6.99541 7.10734 7.42006 7.56171 7.68741 8.13391 8.65446 8.97051 10.56390 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.016925 B = 0.006277 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.982383 B = 4459.391346 C = 5794.826118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.157 4.157 3 C 0.144 3.856 4 N -0.617 5.617 5 C 0.083 3.917 6 C 0.566 3.434 7 O -0.511 6.511 8 C -0.161 4.161 9 C -0.066 4.066 10 C -0.180 4.180 11 C -0.080 4.080 12 C -0.152 4.152 13 C -0.048 4.048 14 S 0.102 5.898 15 C -0.568 4.568 16 H 0.094 0.906 17 C 0.080 3.920 18 N -0.859 5.859 19 Si 0.924 3.076 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.269 1.269 23 H 0.093 0.907 24 H 0.097 0.903 25 H 0.115 0.885 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.139 0.861 35 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.799 12.056 3.490 14.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.176 4.176 3 C 0.022 3.978 4 N -0.352 5.352 5 C -0.061 4.061 6 C 0.355 3.645 7 O -0.386 6.386 8 C -0.175 4.175 9 C -0.086 4.086 10 C -0.204 4.204 11 C -0.101 4.101 12 C -0.178 4.178 13 C -0.167 4.167 14 S 0.363 5.637 15 C -0.715 4.715 16 H 0.111 0.889 17 C -0.131 4.131 18 N -0.492 5.492 19 Si 0.749 3.251 20 H -0.195 1.195 21 H -0.205 1.205 22 H -0.194 1.194 23 H 0.112 0.888 24 H 0.115 0.885 25 H 0.133 0.867 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.156 0.844 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.479 10.854 1.838 13.895 hybrid contribution 1.686 -0.173 1.489 2.256 sum -6.793 10.681 3.327 13.088 Atomic orbital electron populations 1.23772 0.95644 1.01590 1.02258 1.23479 0.96075 0.99844 0.98208 1.20494 0.91727 0.94866 0.90714 1.47785 1.11623 1.63915 1.11855 1.21799 1.00592 0.98292 0.85374 1.18424 0.81319 0.77100 0.87632 1.90816 1.78157 1.40889 1.28708 1.19135 1.03294 0.94219 1.00872 1.20901 0.97523 0.95250 0.94919 1.20663 1.00894 0.98312 1.00553 1.21078 0.97861 0.92796 0.98407 1.21410 1.00523 0.98380 0.97453 1.22877 0.95984 1.00348 0.97468 1.83967 1.37363 0.94283 1.48064 1.23500 1.20159 1.01224 1.26598 0.88881 1.25114 0.96864 0.96712 0.94376 1.69964 1.37820 1.14781 1.26639 0.86124 0.80998 0.78489 0.79508 1.19465 1.20526 1.19408 0.88837 0.88480 0.86670 0.90494 0.89142 0.92992 0.91754 0.90201 0.86782 0.86947 0.86939 0.84387 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.17 14.32 29.01 0.42 -1.76 16 2 C -0.16 -2.18 9.85 -36.03 -0.35 -2.54 16 3 C 0.14 1.93 5.83 -5.19 -0.03 1.90 16 4 N -0.62 -9.53 2.86 -184.23 -0.53 -10.05 16 5 C 0.08 0.98 9.17 59.85 0.55 1.53 16 6 C 0.57 11.30 6.60 -12.52 -0.08 11.22 16 7 O -0.51 -12.14 15.47 5.27 0.08 -12.06 16 8 C -0.16 -3.21 4.61 -104.75 -0.48 -3.70 16 9 C -0.07 -1.06 8.01 -39.20 -0.31 -1.37 16 10 C -0.18 -2.74 10.02 -39.58 -0.40 -3.14 16 11 C -0.08 -1.35 10.03 -39.55 -0.40 -1.74 16 12 C -0.15 -3.15 9.24 -39.38 -0.36 -3.51 16 13 C -0.05 -1.10 6.13 -38.39 -0.24 -1.34 16 14 S 0.10 2.73 19.79 -107.50 -2.13 0.61 16 15 C -0.57 -15.64 9.08 30.94 0.28 -15.36 16 16 H 0.09 2.41 4.86 -52.49 -0.26 2.16 16 17 C 0.08 2.20 5.49 -17.46 -0.10 2.10 16 18 N -0.86 -24.80 13.22 55.49 0.73 -24.07 16 19 Si 0.92 20.64 29.55 -169.99 -5.02 15.61 16 20 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 23 H 0.09 0.85 7.84 -52.48 -0.41 0.44 16 24 H 0.10 1.02 8.06 -52.49 -0.42 0.60 16 25 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 26 H 0.08 0.77 7.72 -51.93 -0.40 0.37 16 27 H 0.09 1.32 7.50 -51.93 -0.39 0.93 16 28 H 0.05 0.50 7.61 -51.93 -0.40 0.10 16 29 H 0.06 0.65 8.11 -51.93 -0.42 0.23 16 30 H 0.08 1.06 6.33 -51.93 -0.33 0.73 16 31 H 0.11 1.51 7.14 -52.49 -0.37 1.13 16 32 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 34 H 0.14 2.96 4.99 -52.49 -0.26 2.70 16 35 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 313.22 15.07 4.72 4.72 Total: -1.00 -31.90 313.22 -7.71 -39.61 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -4.06 Total: 3.32 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -1.51 Total: -17.69 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.21 Total: -34.12 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.08 Total: -12.06 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -2.13 Total: 0.61 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.90 -7.71 -39.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779067307.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.205 kcal (2) G-P(sol) polarization free energy of solvation -31.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds