Wall clock time and date at job start Mon Mar 30 2020 02:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50694 * 120.00029 * 2 1 4 4 N 1.46504 * 109.47226 * 125.00067 * 3 2 1 5 5 C 1.46498 * 119.99979 * 270.00079 * 4 3 2 6 6 C 1.34774 * 120.00093 * 89.99823 * 4 3 2 7 7 O 1.21612 * 119.99871 * 354.65599 * 6 4 3 8 8 C 1.47424 * 120.00000 * 174.65789 * 6 4 3 9 9 C 1.39679 * 120.21628 * 309.08133 * 8 6 4 10 10 C 1.37809 * 119.93980 * 179.97438 * 9 8 6 11 11 C 1.38656 * 120.37939 * 359.97438 * 10 9 8 12 12 C 1.37910 * 120.43913 * 0.02562 * 11 10 9 13 13 C 1.39113 * 120.05244 * 359.97396 * 12 11 10 14 14 S 1.76196 * 120.18907 * 179.97438 * 13 12 11 15 15 C 1.76201 * 100.00256 * 351.74871 * 14 13 12 16 16 H 1.08001 * 119.99518 * 5.05900 * 15 14 13 17 17 C 1.38805 * 120.00115 * 185.06377 * 15 14 13 18 18 N 1.31548 * 119.99982 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00028 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46915 * 60.00093 * 19 17 15 21 21 H 1.48493 * 109.46896 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46980 * 299.99793 * 19 17 15 23 23 H 1.08003 * 119.99792 * 359.97438 * 1 2 3 24 24 H 1.08000 * 120.00170 * 180.02562 * 1 2 3 25 25 H 1.07997 * 119.99935 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.47128 * 5.00192 * 3 2 1 27 27 H 1.08998 * 109.47247 * 244.99966 * 3 2 1 28 28 H 1.08997 * 109.47337 * 274.36906 * 5 4 3 29 29 H 1.09004 * 109.47413 * 34.37068 * 5 4 3 30 30 H 1.09003 * 109.47292 * 154.37008 * 5 4 3 31 31 H 1.08000 * 120.02714 * 0.25381 * 9 8 6 32 32 H 1.08000 * 119.80558 * 179.97438 * 10 9 8 33 33 H 1.08002 * 119.77601 * 179.97438 * 11 10 9 34 34 H 1.08002 * 119.97046 * 179.97438 * 12 11 10 35 35 H 0.97004 * 120.00518 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8649 2.4249 6 6 4.2497 0.8661 0.9824 7 8 4.5816 0.3351 -0.0601 8 6 5.2211 1.0003 2.0832 9 6 5.4233 2.2395 2.6952 10 6 6.3324 2.3583 3.7240 11 6 7.0493 1.2534 4.1575 12 6 6.8620 0.0225 3.5644 13 6 5.9489 -0.1180 2.5244 14 16 5.7074 -1.6888 1.7637 15 6 7.0119 -2.5995 2.5210 16 1 7.6123 -2.1419 3.2933 17 6 7.2680 -3.9049 2.1248 18 7 6.5365 -4.4624 1.1843 19 14 8.6515 -4.8701 2.9272 20 1 8.3962 -4.9814 4.3858 21 1 8.7173 -6.2288 2.3316 22 1 9.9404 -4.1676 2.7023 23 1 -0.5400 0.9354 0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3586 2.1316 0.0896 27 1 2.6213 1.4026 -0.9314 28 1 2.6936 2.9464 2.4360 29 1 1.5063 1.6282 2.5800 30 1 3.1533 1.4166 3.2210 31 1 4.8644 3.1027 2.3653 32 1 6.4873 3.3176 4.1954 33 1 7.7596 1.3577 4.9644 34 1 7.4248 -0.8330 3.9078 35 1 6.7152 -5.3748 0.9077 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779067307.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:22 Heat of formation + Delta-G solvation = -1.641702 kcal Electronic energy + Delta-G solvation = -18797.093878 eV Core-core repulsion = 15886.324123 eV Total energy + Delta-G solvation = -2910.769755 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.18978 -39.08642 -37.03076 -34.81579 -34.48508 -32.01845 -31.83446 -28.35818 -27.90587 -26.97473 -24.03330 -23.48736 -21.42337 -20.60624 -19.61626 -18.30944 -17.64329 -17.38316 -17.08378 -16.63952 -16.15175 -15.58030 -15.45985 -14.88345 -14.64334 -14.41835 -14.18079 -13.80885 -13.68736 -13.37089 -13.14936 -12.97101 -12.91919 -12.83323 -12.61940 -12.19535 -12.08433 -11.50796 -11.40477 -11.10129 -10.55631 -10.40541 -10.25526 -9.79552 -9.62689 -8.51828 -8.49450 -6.29513 0.16071 0.51867 1.21001 1.24366 1.38011 1.43369 1.58921 1.78107 2.15753 2.28212 2.81810 2.95167 3.16069 3.66660 4.00489 4.04942 4.14999 4.25186 4.33779 4.51782 4.61524 4.63893 4.66308 4.79191 4.84716 4.94757 5.03010 5.10330 5.34905 5.45686 5.49409 5.57433 5.66485 5.69333 5.84516 6.06886 6.14704 6.37620 6.91009 7.21757 8.57623 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.016925 B = 0.006277 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.982383 B = 4459.391346 C = 5794.826118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.196 4.196 3 C 0.146 3.854 4 N -0.608 5.608 5 C 0.075 3.925 6 C 0.555 3.445 7 O -0.567 6.567 8 C -0.165 4.165 9 C -0.059 4.059 10 C -0.147 4.147 11 C -0.075 4.075 12 C -0.170 4.170 13 C -0.069 4.069 14 S -0.013 6.013 15 C -0.575 4.575 16 H 0.100 0.900 17 C 0.020 3.980 18 N -0.907 5.907 19 Si 1.000 3.000 20 H -0.257 1.257 21 H -0.274 1.274 22 H -0.261 1.261 23 H 0.131 0.869 24 H 0.101 0.899 25 H 0.065 0.935 26 H 0.126 0.874 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.156 0.844 32 H 0.168 0.832 33 H 0.152 0.848 34 H 0.120 0.880 35 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.397 16.196 6.037 19.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.215 4.215 3 C 0.024 3.976 4 N -0.341 5.341 5 C -0.066 4.066 6 C 0.344 3.656 7 O -0.446 6.446 8 C -0.177 4.177 9 C -0.079 4.079 10 C -0.170 4.170 11 C -0.095 4.095 12 C -0.195 4.195 13 C -0.186 4.186 14 S 0.242 5.758 15 C -0.721 4.721 16 H 0.118 0.882 17 C -0.186 4.186 18 N -0.541 5.541 19 Si 0.821 3.179 20 H -0.181 1.181 21 H -0.199 1.199 22 H -0.186 1.186 23 H 0.149 0.851 24 H 0.119 0.881 25 H 0.084 0.916 26 H 0.144 0.856 27 H 0.087 0.913 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.173 0.827 32 H 0.185 0.815 33 H 0.169 0.831 34 H 0.138 0.862 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.118 15.109 4.453 18.200 hybrid contribution 1.703 -1.097 0.791 2.175 sum -7.414 14.013 5.244 16.698 Atomic orbital electron populations 1.24039 0.94294 1.03512 0.97426 1.23228 0.97154 0.98377 1.02790 1.20661 0.91688 0.96030 0.89200 1.47878 1.10286 1.62132 1.13780 1.22092 1.01581 1.00168 0.82795 1.18660 0.82964 0.76991 0.86958 1.90786 1.79566 1.43425 1.30832 1.19463 1.02632 0.94938 1.00686 1.21382 0.97638 0.94497 0.94358 1.21335 0.97557 0.99732 0.98367 1.21518 0.98173 0.91299 0.98515 1.21444 1.00429 0.99916 0.97725 1.22733 0.98475 0.98556 0.98820 1.84132 1.40182 0.99123 1.52329 1.23765 1.20118 1.01656 1.26603 0.88213 1.26236 0.99635 0.97741 0.94946 1.70133 1.40100 1.15148 1.28768 0.84979 0.77331 0.76801 0.78838 1.18081 1.19885 1.18592 0.85107 0.88085 0.91612 0.85622 0.91341 0.89161 0.89433 0.91863 0.82666 0.81501 0.83078 0.86234 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 14.32 67.78 0.97 -2.18 16 2 C -0.20 -5.60 9.85 25.64 0.25 -5.35 16 3 C 0.15 3.79 5.83 85.63 0.50 4.29 16 4 N -0.61 -18.29 2.86 -855.05 -2.44 -20.73 16 5 C 0.08 1.53 9.17 127.77 1.17 2.70 16 6 C 0.56 22.92 6.60 86.66 0.57 23.49 16 7 O -0.57 -29.19 15.47 -4.07 -0.06 -29.25 16 8 C -0.16 -6.55 4.61 -19.95 -0.09 -6.65 16 9 C -0.06 -1.66 8.01 22.52 0.18 -1.48 16 10 C -0.15 -3.62 10.02 22.27 0.22 -3.39 16 11 C -0.07 -2.23 10.03 22.29 0.22 -2.01 16 12 C -0.17 -7.06 9.24 22.40 0.21 -6.85 16 13 C -0.07 -3.28 6.13 23.04 0.14 -3.14 16 14 S -0.01 -0.79 19.79 -56.49 -1.12 -1.90 16 15 C -0.57 -33.82 9.08 67.96 0.62 -33.20 16 16 H 0.10 5.48 4.86 -2.91 -0.01 5.46 16 17 C 0.02 1.15 5.49 84.87 0.47 1.62 16 18 N -0.91 -56.15 13.22 21.64 0.29 -55.86 16 19 Si 1.00 44.04 29.55 68.60 2.03 46.06 16 20 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 22 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 23 H 0.13 1.74 7.84 -2.91 -0.02 1.71 16 24 H 0.10 1.98 8.06 -2.91 -0.02 1.96 16 25 H 0.07 2.51 8.06 -2.91 -0.02 2.49 16 26 H 0.13 2.02 7.72 -2.39 -0.02 2.00 16 27 H 0.07 2.07 7.50 -2.39 -0.02 2.06 16 28 H 0.09 1.20 7.61 -2.39 -0.02 1.18 16 29 H 0.09 1.41 8.11 -2.39 -0.02 1.39 16 30 H 0.06 1.52 6.33 -2.39 -0.02 1.51 16 31 H 0.16 3.13 7.14 -2.91 -0.02 3.11 16 32 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 33 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16 34 H 0.12 5.33 4.99 -2.91 -0.01 5.32 16 35 H 0.28 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -81.13 313.22 5.22 -75.92 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 1.10 Total: 17.91 kcal Atomic # 6 Polarization: -37.57 SS G_CDS: 5.43 Total: -32.14 kcal Atomic # 7 Polarization: -74.44 SS G_CDS: -2.16 Total: -76.59 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.06 Total: -29.25 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -0.79 SS G_CDS: -1.12 Total: -1.90 kcal Total: -81.13 5.22 -75.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779067307.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.275 kcal (2) G-P(sol) polarization free energy of solvation -81.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds