Wall clock time and date at job start Mon Mar 30 2020 01:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.38103 * 125.88203 * 144.92473 * 3 2 1 5 5 C 1.39318 * 107.53073 * 180.02562 * 4 3 2 6 6 C 1.38085 * 107.47442 * 359.97438 * 5 4 3 7 7 C 1.46885 * 125.93078 * 179.97438 * 6 5 4 8 8 O 1.21573 * 120.00296 * 0.02806 * 7 6 5 9 9 O 1.34853 * 120.00064 * 180.02562 * 7 6 5 10 10 C 1.45206 * 117.00112 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.47147 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99926 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99773 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99583 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.46860 * 180.02562 * 14 13 11 16 16 H 1.07995 * 119.99838 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99810 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99642 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00183 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47212 * 89.99952 * 19 17 15 21 21 H 1.48504 * 109.47345 * 210.00388 * 19 17 15 22 22 H 1.48504 * 109.47139 * 330.00299 * 19 17 15 23 23 N 1.36677 * 125.88738 * 325.21062 * 3 2 1 24 24 H 0.97006 * 125.68689 * 359.97438 * 23 3 2 25 25 H 1.08003 * 126.23475 * 359.97438 * 4 3 2 26 26 H 1.07997 * 126.26571 * 179.97438 * 5 4 3 27 27 H 1.09001 * 109.47157 * 299.99488 * 10 9 7 28 28 H 1.09004 * 109.47122 * 59.99621 * 10 9 7 29 29 H 0.96998 * 120.00166 * 0.02562 * 13 11 10 30 30 H 1.08988 * 109.47941 * 300.00311 * 14 13 11 31 31 H 1.09001 * 109.47199 * 60.00916 * 14 13 11 32 32 H 0.96999 * 119.99682 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3771 0.9167 -0.6430 5 6 4.6996 0.5580 -0.3914 6 6 4.6789 -0.5718 0.4022 7 6 5.8553 -1.2921 0.9071 8 8 6.9726 -0.9001 0.6315 9 8 5.6960 -2.3881 1.6764 10 6 6.9028 -3.0497 2.1394 11 6 6.5301 -4.2444 2.9790 12 8 5.3625 -4.5122 3.1682 13 7 7.4945 -5.0158 3.5189 14 6 7.1322 -6.1768 4.3355 15 6 8.3847 -6.8635 4.8159 16 1 9.3536 -6.4738 4.5408 17 6 8.2936 -7.9893 5.6067 18 7 9.3867 -8.5883 6.0263 19 14 6.6178 -8.6630 6.0831 20 1 6.1714 -9.6461 5.0636 21 1 6.7104 -9.3299 7.4067 22 1 5.6392 -7.5485 6.1578 23 7 3.3696 -0.9084 0.6318 24 1 3.0634 -1.6642 1.1572 25 1 3.0450 1.7576 -1.2340 26 1 5.5798 1.0699 -0.7512 27 1 7.4897 -3.3771 1.2813 28 1 7.4913 -2.3545 2.7382 29 1 8.4283 -4.8018 3.3673 30 1 6.5461 -5.8488 5.1939 31 1 6.5429 -6.8720 3.7375 32 1 9.3226 -9.3801 6.5830 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786091782.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:53 Heat of formation + Delta-G solvation = -43.578775 kcal Electronic energy + Delta-G solvation = -19457.469920 eV Core-core repulsion = 15998.588423 eV Total energy + Delta-G solvation = -3458.881497 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.96486 -40.39235 -38.93208 -36.96748 -36.60588 -34.48257 -32.50950 -31.87489 -30.83294 -29.49199 -27.32136 -24.74145 -22.43126 -21.88697 -20.96670 -20.27712 -19.96356 -18.26093 -17.63888 -16.94636 -16.78113 -15.95200 -15.47703 -15.22560 -15.07984 -14.75250 -14.31711 -14.10375 -13.73873 -13.57133 -13.43457 -13.24223 -13.10217 -12.78355 -12.72093 -12.45052 -12.19313 -11.17319 -11.09890 -11.00646 -10.84230 -10.06264 -9.73797 -9.61415 -9.48235 -8.95211 -8.88174 -8.37155 -6.29661 -4.33205 0.35122 1.53877 1.68372 2.06764 2.59716 2.63696 2.89921 2.92175 3.20459 3.27679 3.34500 3.45939 3.71681 4.25417 4.41316 4.56423 4.67173 4.91936 5.01631 5.06145 5.09705 5.27869 5.48634 5.89659 5.97446 6.13269 6.56107 6.64396 6.89081 6.92817 6.98344 7.24235 7.32414 7.95849 8.33009 8.57929 8.71601 9.29011 10.82065 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.028955 B = 0.002997 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.791285 B = 9340.661090 C =10287.004574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C 0.273 3.727 3 C 0.103 3.897 4 C -0.129 4.129 5 C -0.103 4.103 6 C 0.013 3.987 7 C 0.533 3.467 8 O -0.487 6.487 9 O -0.334 6.334 10 C 0.052 3.948 11 C 0.502 3.498 12 O -0.539 6.539 13 N -0.697 5.697 14 C 0.222 3.778 15 C -0.548 4.548 16 H 0.081 0.919 17 C 0.079 3.921 18 N -0.889 5.889 19 Si 0.877 3.123 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.261 1.261 23 N -0.499 5.499 24 H 0.436 0.564 25 H 0.163 0.837 26 H 0.166 0.834 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.400 0.600 30 H 0.028 0.972 31 H 0.024 0.976 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.914 18.240 -12.782 23.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.066 5.066 2 C -0.043 4.043 3 C -0.017 4.017 4 C -0.157 4.157 5 C -0.129 4.129 6 C -0.103 4.103 7 C 0.377 3.623 8 O -0.374 6.374 9 O -0.249 6.249 10 C -0.025 4.025 11 C 0.285 3.715 12 O -0.417 6.417 13 N -0.347 5.347 14 C 0.101 3.899 15 C -0.585 4.585 16 H 0.099 0.901 17 C -0.125 4.125 18 N -0.526 5.526 19 Si 0.703 3.297 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.185 1.185 23 N -0.096 5.096 24 H 0.276 0.724 25 H 0.181 0.819 26 H 0.184 0.816 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.234 0.766 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.087 17.765 -12.448 23.922 hybrid contribution 0.187 -0.841 0.563 1.029 sum -9.900 16.924 -11.885 22.927 Atomic orbital electron populations 1.81354 1.11142 1.06349 1.07710 1.24257 0.90753 0.94863 0.94410 1.15663 0.83351 0.96639 1.06015 1.21267 0.91222 1.00259 1.02904 1.21311 0.98143 0.94747 0.98659 1.19474 0.81280 1.00842 1.08747 1.19826 0.87708 0.78652 0.76135 1.90935 1.24463 1.66207 1.55790 1.86582 1.37128 1.39297 1.61914 1.22900 0.85118 0.94471 0.99998 1.19896 0.86734 0.83768 0.81093 1.90696 1.18520 1.71799 1.60707 1.46070 1.08775 1.28980 1.50908 1.19569 0.97522 0.82829 0.90020 1.21052 0.92332 1.11942 1.33201 0.90069 1.24787 0.96973 0.95940 0.94842 1.69872 1.27733 1.20187 1.34831 0.86820 0.84413 0.80015 0.78451 1.19783 1.20797 1.18525 1.42003 1.04945 1.23555 1.39051 0.72361 0.81943 0.81625 0.87810 0.87816 0.76582 0.95398 0.95847 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -4.17 18.54 41.84 0.78 -3.39 16 2 C 0.27 2.29 15.89 -22.47 -0.36 1.94 16 3 C 0.10 0.72 6.93 -83.83 -0.58 0.14 16 4 C -0.13 -0.72 10.80 -39.23 -0.42 -1.14 16 5 C -0.10 -0.70 10.60 -39.24 -0.42 -1.11 16 6 C 0.01 0.11 7.07 -82.06 -0.58 -0.47 16 7 C 0.53 5.99 7.94 34.23 0.27 6.26 16 8 O -0.49 -6.21 16.67 -19.32 -0.32 -6.53 16 9 O -0.33 -4.29 9.77 -47.60 -0.46 -4.75 16 10 C 0.05 0.66 5.96 36.01 0.21 0.88 16 11 C 0.50 8.74 7.91 -10.98 -0.09 8.65 16 12 O -0.54 -11.49 16.50 -14.10 -0.23 -11.72 16 13 N -0.70 -12.93 5.55 -61.47 -0.34 -13.27 16 14 C 0.22 5.17 4.50 -5.19 -0.02 5.14 16 15 C -0.55 -14.39 9.83 -34.44 -0.34 -14.73 16 16 H 0.08 2.21 7.84 -52.49 -0.41 1.80 16 17 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 18 N -0.89 -25.71 13.96 55.43 0.77 -24.94 16 19 Si 0.88 20.74 27.47 -169.99 -4.67 16.07 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 23 N -0.50 -3.82 6.13 -6.98 -0.04 -3.86 16 24 H 0.44 3.06 8.96 -40.82 -0.37 2.69 16 25 H 0.16 0.48 8.06 -52.48 -0.42 0.06 16 26 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 27 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.40 6.32 8.32 -40.82 -0.34 5.98 16 30 H 0.03 0.69 7.20 -51.94 -0.37 0.31 16 31 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 32 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 308.82 15.07 4.65 4.65 Total: -1.00 -33.19 308.82 -5.03 -38.21 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -2.74 Total: 1.90 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -2.42 Total: 7.62 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: 1.17 Total: -45.46 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -1.02 Total: -23.00 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.07 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.19 -5.03 -38.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786091782.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.364 kcal (2) G-P(sol) polarization free energy of solvation -33.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds