Wall clock time and date at job start Mon Mar 30 2020 01:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.38103 * 125.88203 * 144.92473 * 3 2 1 5 5 C 1.39318 * 107.53073 * 180.02562 * 4 3 2 6 6 C 1.38085 * 107.47442 * 359.97438 * 5 4 3 7 7 C 1.46885 * 125.93078 * 179.97438 * 6 5 4 8 8 O 1.21573 * 120.00296 * 0.02806 * 7 6 5 9 9 O 1.34853 * 120.00064 * 180.02562 * 7 6 5 10 10 C 1.45206 * 117.00112 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.47147 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99926 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99773 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99583 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.46860 * 180.02562 * 14 13 11 16 16 H 1.07995 * 119.99838 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99810 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99642 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00183 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47212 * 89.99952 * 19 17 15 21 21 H 1.48504 * 109.47345 * 210.00388 * 19 17 15 22 22 H 1.48504 * 109.47139 * 330.00299 * 19 17 15 23 23 N 1.36677 * 125.88738 * 325.21062 * 3 2 1 24 24 H 0.97006 * 125.68689 * 359.97438 * 23 3 2 25 25 H 1.08003 * 126.23475 * 359.97438 * 4 3 2 26 26 H 1.07997 * 126.26571 * 179.97438 * 5 4 3 27 27 H 1.09001 * 109.47157 * 299.99488 * 10 9 7 28 28 H 1.09004 * 109.47122 * 59.99621 * 10 9 7 29 29 H 0.96998 * 120.00166 * 0.02562 * 13 11 10 30 30 H 1.08988 * 109.47941 * 300.00311 * 14 13 11 31 31 H 1.09001 * 109.47199 * 60.00916 * 14 13 11 32 32 H 0.96999 * 119.99682 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3771 0.9167 -0.6430 5 6 4.6996 0.5580 -0.3914 6 6 4.6789 -0.5718 0.4022 7 6 5.8553 -1.2921 0.9071 8 8 6.9726 -0.9001 0.6315 9 8 5.6960 -2.3881 1.6764 10 6 6.9028 -3.0497 2.1394 11 6 6.5301 -4.2444 2.9790 12 8 5.3625 -4.5122 3.1682 13 7 7.4945 -5.0158 3.5189 14 6 7.1322 -6.1768 4.3355 15 6 8.3847 -6.8635 4.8159 16 1 9.3536 -6.4738 4.5408 17 6 8.2936 -7.9893 5.6067 18 7 9.3867 -8.5883 6.0263 19 14 6.6178 -8.6630 6.0831 20 1 6.1714 -9.6461 5.0636 21 1 6.7104 -9.3299 7.4067 22 1 5.6392 -7.5485 6.1578 23 7 3.3696 -0.9084 0.6318 24 1 3.0634 -1.6642 1.1572 25 1 3.0450 1.7576 -1.2340 26 1 5.5798 1.0699 -0.7512 27 1 7.4897 -3.3771 1.2813 28 1 7.4913 -2.3545 2.7382 29 1 8.4283 -4.8018 3.3673 30 1 6.5461 -5.8488 5.1939 31 1 6.5429 -6.8720 3.7375 32 1 9.3226 -9.3801 6.5830 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786091782.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:53 Heat of formation + Delta-G solvation = -67.044163 kcal Electronic energy + Delta-G solvation = -19458.487456 eV Core-core repulsion = 15998.588423 eV Total energy + Delta-G solvation = -3459.899033 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.59105 -41.34613 -40.30261 -37.73144 -37.55029 -36.21029 -34.46862 -32.42140 -31.64746 -30.81694 -28.83329 -25.59230 -24.06894 -22.70302 -21.73781 -21.55603 -20.69545 -19.36025 -18.99406 -18.16078 -17.89944 -17.31493 -16.85692 -16.41779 -16.01688 -15.81875 -15.65575 -14.94860 -14.68322 -14.66857 -14.46644 -14.31837 -14.10101 -13.93009 -13.79879 -13.68050 -13.35968 -13.09127 -12.72154 -12.03505 -11.96186 -11.94441 -11.67086 -10.99107 -10.92917 -10.24604 -10.04640 -9.56206 -8.40441 -6.47878 -0.31731 0.92145 0.98307 1.18517 1.32871 1.36270 1.46739 1.51074 1.94236 1.96282 2.27319 2.30639 2.46211 2.84853 2.95142 3.56406 3.68172 4.05477 4.07395 4.07960 4.16636 4.73705 4.75808 5.00053 5.04169 5.10998 5.23658 5.38266 5.39468 5.64976 5.97253 6.05126 6.24213 6.46002 6.53028 6.71391 7.11207 7.26860 8.74096 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.028955 B = 0.002997 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.791285 B = 9340.661090 C =10287.004574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.298 3.702 3 C 0.101 3.899 4 C -0.110 4.110 5 C -0.092 4.092 6 C -0.007 4.007 7 C 0.538 3.462 8 O -0.505 6.505 9 O -0.349 6.349 10 C 0.061 3.939 11 C 0.504 3.496 12 O -0.580 6.580 13 N -0.696 5.696 14 C 0.232 3.768 15 C -0.547 4.547 16 H 0.063 0.937 17 C 0.026 3.974 18 N -0.930 5.930 19 Si 0.936 3.064 20 H -0.265 1.265 21 H -0.275 1.275 22 H -0.258 1.258 23 N -0.503 5.503 24 H 0.436 0.564 25 H 0.194 0.806 26 H 0.183 0.817 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.414 0.586 30 H 0.017 0.983 31 H 0.016 0.984 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.483 19.852 -13.951 25.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.017 4.017 3 C -0.019 4.019 4 C -0.138 4.138 5 C -0.117 4.117 6 C -0.123 4.123 7 C 0.383 3.617 8 O -0.393 6.393 9 O -0.265 6.265 10 C -0.015 4.015 11 C 0.290 3.710 12 O -0.460 6.460 13 N -0.348 5.348 14 C 0.109 3.891 15 C -0.585 4.585 16 H 0.081 0.919 17 C -0.174 4.174 18 N -0.569 5.569 19 Si 0.760 3.240 20 H -0.190 1.190 21 H -0.201 1.201 22 H -0.182 1.182 23 N -0.099 5.099 24 H 0.276 0.724 25 H 0.212 0.788 26 H 0.200 0.800 27 H 0.147 0.853 28 H 0.147 0.853 29 H 0.250 0.750 30 H 0.035 0.965 31 H 0.034 0.966 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.639 19.404 -13.636 25.993 hybrid contribution 0.408 -1.260 0.869 1.584 sum -10.231 18.144 -12.767 24.431 Atomic orbital electron populations 1.81381 1.12405 1.07837 1.09272 1.24315 0.90773 0.93547 0.93107 1.15746 0.82657 0.97049 1.06408 1.21655 0.90226 1.00151 1.01738 1.21624 0.99222 0.93623 0.97269 1.19419 0.80892 1.01766 1.10254 1.20089 0.88299 0.77921 0.75390 1.90923 1.25238 1.66572 1.56564 1.86573 1.37241 1.40127 1.62527 1.22791 0.85337 0.92925 1.00456 1.20600 0.85647 0.84320 0.80413 1.90675 1.20224 1.73015 1.62104 1.45852 1.10011 1.28180 1.50717 1.19163 0.95698 0.84112 0.90148 1.21281 0.92787 1.11865 1.32595 0.91931 1.25590 1.00281 0.96490 0.95046 1.69978 1.29814 1.21052 1.36068 0.85876 0.80197 0.79443 0.78480 1.19036 1.20058 1.18250 1.42005 1.04750 1.23834 1.39349 0.72370 0.78849 0.79969 0.85312 0.85340 0.74966 0.96505 0.96605 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -8.95 18.54 19.01 0.35 -8.60 16 2 C 0.30 4.59 15.89 88.33 1.40 6.00 16 3 C 0.10 1.19 6.93 39.60 0.27 1.47 16 4 C -0.11 -0.85 10.80 22.50 0.24 -0.61 16 5 C -0.09 -0.95 10.60 22.49 0.24 -0.72 16 6 C -0.01 -0.12 7.07 40.54 0.29 0.17 16 7 C 0.54 11.12 7.94 70.09 0.56 11.68 16 8 O -0.51 -11.81 16.67 19.60 0.33 -11.48 16 9 O -0.35 -8.44 9.77 -51.27 -0.50 -8.94 16 10 C 0.06 1.43 5.96 71.24 0.42 1.85 16 11 C 0.50 17.02 7.91 87.66 0.69 17.72 16 12 O -0.58 -24.48 16.50 15.77 0.26 -24.21 16 13 N -0.70 -25.26 5.55 -466.79 -2.59 -27.85 16 14 C 0.23 10.73 4.50 85.63 0.39 11.12 16 15 C -0.55 -28.94 9.83 25.60 0.25 -28.69 16 16 H 0.06 3.46 7.84 -2.91 -0.02 3.44 16 17 C 0.03 1.45 5.47 84.65 0.46 1.91 16 18 N -0.93 -54.34 13.96 21.45 0.30 -54.04 16 19 Si 0.94 42.70 27.47 68.60 1.88 44.58 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.26 -11.58 6.54 99.48 0.65 -10.93 16 23 N -0.50 -6.94 6.13 -176.00 -1.08 -8.01 16 24 H 0.44 5.81 8.96 -92.70 -0.83 4.98 16 25 H 0.19 0.27 8.06 -2.91 -0.02 0.25 16 26 H 0.18 1.28 8.06 -2.91 -0.02 1.26 16 27 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.13 2.40 8.14 -2.38 -0.02 2.38 16 29 H 0.41 12.66 8.32 -92.71 -0.77 11.88 16 30 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 31 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16 32 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -71.58 308.82 3.72 -67.86 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -0.45 Total: 8.80 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: 5.22 Total: 21.90 kcal Atomic # 7 Polarization: -95.48 SS G_CDS: -3.02 Total: -98.50 kcal Atomic # 8 Polarization: -44.72 SS G_CDS: 0.09 Total: -44.64 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.88 Total: 44.58 kcal Total: -71.58 3.72 -67.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786091782.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.818 kcal (2) G-P(sol) polarization free energy of solvation -71.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds