Wall clock time and date at job start Mon Mar 30 2020 01:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.36330 * 125.83159 * 191.75500 * 3 2 1 5 5 C 1.41491 * 107.00328 * 180.13406 * 4 3 2 6 6 C 1.47232 * 126.47938 * 179.89806 * 5 4 3 7 7 O 1.21530 * 119.99858 * 359.70679 * 6 5 4 8 8 O 1.34768 * 119.99928 * 179.71138 * 6 5 4 9 9 C 1.45194 * 116.99748 * 179.97438 * 8 6 5 10 10 C 1.50706 * 109.47090 * 179.97438 * 9 8 6 11 11 O 1.21279 * 119.99507 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00020 * 179.97438 * 10 9 8 13 13 C 1.46496 * 119.99544 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.46760 * 180.02562 * 13 12 10 15 15 H 1.07998 * 120.00275 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99908 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00273 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99899 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47170 * 90.00331 * 18 16 14 20 20 H 1.48502 * 109.47245 * 210.00171 * 18 16 14 21 21 H 1.48508 * 109.47285 * 330.00389 * 18 16 14 22 22 C 1.38204 * 107.04007 * 359.62794 * 5 4 3 23 23 N 1.34387 * 108.37770 * 0.23111 * 22 5 4 24 24 H 0.97003 * 125.37949 * 179.97438 * 23 22 5 25 25 H 1.07998 * 126.50111 * 359.97438 * 4 3 2 26 26 H 1.09001 * 109.46972 * 59.99973 * 9 8 6 27 27 H 1.09000 * 109.47619 * 300.00180 * 9 8 6 28 28 H 0.96994 * 119.99756 * 0.02562 * 12 10 9 29 29 H 1.08996 * 109.47366 * 299.99598 * 13 12 10 30 30 H 1.08992 * 109.47635 * 60.00246 * 13 12 10 31 31 H 0.96996 * 120.00505 * 180.02562 * 17 16 14 32 32 H 1.08002 * 125.80783 * 180.26125 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3656 1.0831 0.2252 5 6 4.7050 0.6373 0.1290 6 6 5.9152 1.4589 0.2966 7 8 5.8152 2.6458 0.5379 8 8 7.1338 0.8948 0.1822 9 6 8.2823 1.7653 0.3591 10 6 9.5489 0.9649 0.1974 11 8 9.4894 -0.2222 -0.0437 12 7 10.7477 1.5685 0.3196 13 6 11.9789 0.7904 0.1619 14 6 13.1710 1.6939 0.3456 15 1 13.0260 2.7428 0.5581 16 6 14.4469 1.1814 0.2423 17 7 14.6236 -0.0957 -0.0170 18 14 15.9245 2.3014 0.4693 19 1 16.3157 2.3206 1.9017 20 1 17.0581 1.7969 -0.3467 21 1 15.5745 3.6772 0.0333 22 6 4.6625 -0.7165 -0.1457 23 7 3.3747 -1.0931 -0.2221 24 1 3.0627 -1.9932 -0.4052 25 1 3.0374 2.0905 0.4344 26 1 8.2552 2.2044 1.3564 27 1 8.2555 2.5586 -0.3880 28 1 10.7952 2.5180 0.5121 29 1 12.0060 -0.0025 0.9092 30 1 12.0059 0.3510 -0.8352 31 1 15.5211 -0.4564 -0.0894 32 1 5.5185 -1.3619 -0.2763 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786908202.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:56 Heat of formation + Delta-G solvation = -46.958984 kcal Electronic energy + Delta-G solvation = -19291.110044 eV Core-core repulsion = 15832.081970 eV Total energy + Delta-G solvation = -3459.028074 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.98374 -40.14843 -38.63545 -36.92286 -36.22678 -34.25907 -32.42899 -32.09326 -30.54153 -29.07078 -26.73071 -24.07015 -23.00699 -22.47557 -20.56739 -20.02063 -19.88557 -17.48607 -17.35936 -16.58257 -16.25225 -16.03997 -15.41576 -15.35259 -15.03820 -14.65233 -14.50200 -14.21477 -13.54351 -13.48275 -13.29926 -12.95266 -12.89844 -12.79311 -12.41375 -12.00481 -11.77695 -11.02818 -10.92913 -10.70852 -10.66446 -10.35630 -9.73902 -9.45429 -9.19152 -8.91052 -8.79519 -8.00228 -6.21126 -4.28370 0.88107 1.22823 1.76106 2.44329 2.65404 2.83911 3.08253 3.18164 3.22440 3.28896 3.31106 3.52728 4.02682 4.32126 4.45837 4.62475 4.78398 5.04936 5.15235 5.26667 5.31806 5.34495 5.42985 5.92892 6.06200 6.36274 6.60055 6.94760 7.21037 7.29581 7.44180 7.58859 7.75889 7.90604 8.48917 8.69771 8.95090 9.38115 10.88960 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.063715 B = 0.002489 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.351584 B =11247.696227 C =11666.601634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C 0.280 3.720 3 C 0.041 3.959 4 C -0.042 4.042 5 C -0.216 4.216 6 C 0.538 3.462 7 O -0.513 6.513 8 O -0.328 6.328 9 C 0.051 3.949 10 C 0.500 3.500 11 O -0.537 6.537 12 N -0.707 5.707 13 C 0.251 3.749 14 C -0.545 4.545 15 H 0.065 0.935 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.905 3.095 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.124 3.876 23 N -0.519 5.519 24 H 0.430 0.570 25 H 0.164 0.836 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.393 0.607 29 H 0.029 0.971 30 H 0.030 0.970 31 H 0.266 0.734 32 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.907 -0.028 -0.005 19.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.080 5.080 2 C -0.035 4.035 3 C -0.070 4.070 4 C -0.070 4.070 5 C -0.223 4.223 6 C 0.382 3.618 7 O -0.402 6.402 8 O -0.243 6.243 9 C -0.026 4.026 10 C 0.283 3.717 11 O -0.414 6.414 12 N -0.357 5.357 13 C 0.131 3.869 14 C -0.584 4.584 15 H 0.083 0.917 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.732 3.268 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.020 4.020 23 N -0.114 5.114 24 H 0.269 0.731 25 H 0.182 0.818 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.226 0.774 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -21.629 -0.830 -0.173 21.646 hybrid contribution 1.308 0.716 0.156 1.499 sum -20.321 -0.114 -0.017 20.321 Atomic orbital electron populations 1.81345 1.11208 1.05376 1.10055 1.24214 0.90705 0.95108 0.93499 1.15090 0.83405 0.88712 1.19798 1.21063 0.89732 0.98150 0.98021 1.18603 0.91206 0.93215 1.19312 1.20088 0.82834 0.85697 0.73133 1.90854 1.87502 1.16269 1.45575 1.86577 1.13806 1.41727 1.82203 1.22849 0.83007 0.92541 1.04226 1.19898 0.84514 0.88197 0.79041 1.90690 1.87131 1.15260 1.48342 1.46365 1.06171 1.13198 1.69940 1.19167 0.78366 0.91612 0.97744 1.21217 0.90538 0.95521 1.51079 0.91737 1.24953 0.99146 0.95272 0.94635 1.69965 1.22754 1.12290 1.47204 0.86391 0.81660 0.80498 0.78221 1.20438 1.21005 1.19703 1.22915 0.86236 0.95869 0.96937 1.41681 1.05765 1.10644 1.53267 0.73117 0.81841 0.88419 0.88409 0.77377 0.95263 0.95250 0.92381 0.78060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.16 18.54 41.84 0.78 -3.38 16 2 C 0.28 2.24 15.88 -22.47 -0.36 1.89 16 3 C 0.04 0.27 6.90 -83.98 -0.58 -0.31 16 4 C -0.04 -0.33 10.59 -39.03 -0.41 -0.75 16 5 C -0.22 -1.99 6.13 -105.02 -0.64 -2.64 16 6 C 0.54 6.74 7.95 34.38 0.27 7.01 16 7 O -0.51 -7.48 16.71 -19.29 -0.32 -7.81 16 8 O -0.33 -4.60 9.59 -47.36 -0.45 -5.06 16 9 C 0.05 0.72 5.95 36.01 0.21 0.93 16 10 C 0.50 9.39 7.91 -10.98 -0.09 9.31 16 11 O -0.54 -12.23 16.50 -14.10 -0.23 -12.46 16 12 N -0.71 -13.95 5.55 -61.48 -0.34 -14.29 16 13 C 0.25 6.36 5.43 -5.19 -0.03 6.33 16 14 C -0.55 -14.27 9.28 -34.44 -0.32 -14.59 16 15 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.88 -25.35 13.29 55.43 0.74 -24.61 16 18 Si 0.91 20.32 29.54 -169.99 -5.02 15.30 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 22 C 0.12 0.76 11.76 -16.45 -0.19 0.57 16 23 N -0.52 -2.30 6.01 -10.28 -0.06 -2.36 16 24 H 0.43 0.53 8.96 -40.82 -0.37 0.17 16 25 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 26 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.39 6.50 8.32 -40.82 -0.34 6.16 16 29 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.20 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 312.14 15.07 4.70 4.70 Total: -1.00 -34.76 312.14 -5.22 -39.98 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -2.78 Total: 0.60 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: -2.23 Total: 9.38 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: 1.11 Total: -44.64 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -1.01 Total: -25.32 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.76 -5.22 -39.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786908202.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.978 kcal (2) G-P(sol) polarization free energy of solvation -34.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds