Wall clock time and date at job start Mon Mar 30 2020 01:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.36330 * 125.83159 * 191.75500 * 3 2 1 5 5 C 1.41491 * 107.00328 * 180.13406 * 4 3 2 6 6 C 1.47232 * 126.47938 * 179.89806 * 5 4 3 7 7 O 1.21530 * 119.99858 * 359.70679 * 6 5 4 8 8 O 1.34768 * 119.99928 * 179.71138 * 6 5 4 9 9 C 1.45194 * 116.99748 * 179.97438 * 8 6 5 10 10 C 1.50706 * 109.47090 * 179.97438 * 9 8 6 11 11 O 1.21279 * 119.99507 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00020 * 179.97438 * 10 9 8 13 13 C 1.46496 * 119.99544 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.46760 * 180.02562 * 13 12 10 15 15 H 1.07998 * 120.00275 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99908 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00273 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99899 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47170 * 90.00331 * 18 16 14 20 20 H 1.48502 * 109.47245 * 210.00171 * 18 16 14 21 21 H 1.48508 * 109.47285 * 330.00389 * 18 16 14 22 22 C 1.38204 * 107.04007 * 359.62794 * 5 4 3 23 23 N 1.34387 * 108.37770 * 0.23111 * 22 5 4 24 24 H 0.97003 * 125.37949 * 179.97438 * 23 22 5 25 25 H 1.07998 * 126.50111 * 359.97438 * 4 3 2 26 26 H 1.09001 * 109.46972 * 59.99973 * 9 8 6 27 27 H 1.09000 * 109.47619 * 300.00180 * 9 8 6 28 28 H 0.96994 * 119.99756 * 0.02562 * 12 10 9 29 29 H 1.08996 * 109.47366 * 299.99598 * 13 12 10 30 30 H 1.08992 * 109.47635 * 60.00246 * 13 12 10 31 31 H 0.96996 * 120.00505 * 180.02562 * 17 16 14 32 32 H 1.08002 * 125.80783 * 180.26125 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3656 1.0831 0.2252 5 6 4.7050 0.6373 0.1290 6 6 5.9152 1.4589 0.2966 7 8 5.8152 2.6458 0.5379 8 8 7.1338 0.8948 0.1822 9 6 8.2823 1.7653 0.3591 10 6 9.5489 0.9649 0.1974 11 8 9.4894 -0.2222 -0.0437 12 7 10.7477 1.5685 0.3196 13 6 11.9789 0.7904 0.1619 14 6 13.1710 1.6939 0.3456 15 1 13.0260 2.7428 0.5581 16 6 14.4469 1.1814 0.2423 17 7 14.6236 -0.0957 -0.0170 18 14 15.9245 2.3014 0.4693 19 1 16.3157 2.3206 1.9017 20 1 17.0581 1.7969 -0.3467 21 1 15.5745 3.6772 0.0333 22 6 4.6625 -0.7165 -0.1457 23 7 3.3747 -1.0931 -0.2221 24 1 3.0627 -1.9932 -0.4052 25 1 3.0374 2.0905 0.4344 26 1 8.2552 2.2044 1.3564 27 1 8.2555 2.5586 -0.3880 28 1 10.7952 2.5180 0.5121 29 1 12.0060 -0.0025 0.9092 30 1 12.0059 0.3510 -0.8352 31 1 15.5211 -0.4564 -0.0894 32 1 5.5185 -1.3619 -0.2763 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786908202.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:56 Heat of formation + Delta-G solvation = -71.618328 kcal Electronic energy + Delta-G solvation = -19292.179354 eV Core-core repulsion = 15832.081970 eV Total energy + Delta-G solvation = -3460.097383 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.58148 -41.23098 -40.13797 -37.63696 -37.31377 -36.10629 -34.36049 -32.71981 -31.28057 -30.45166 -28.42591 -25.16986 -24.19995 -23.58458 -21.55261 -21.13171 -20.83554 -19.08805 -18.35975 -17.66171 -17.64009 -17.01315 -16.73914 -16.59862 -16.22501 -15.76860 -15.75765 -15.24277 -14.62079 -14.43853 -14.20000 -14.07192 -14.05523 -13.88922 -13.56492 -13.52339 -13.32245 -12.90160 -12.69127 -12.20052 -11.76431 -11.72141 -11.45693 -10.81604 -10.77898 -10.33418 -9.85303 -9.50687 -8.26320 -6.42054 0.31958 0.46579 1.13473 1.40851 1.48213 1.48560 1.60075 1.64919 2.07348 2.10342 2.38006 2.39176 2.66217 3.03314 3.09082 3.72272 3.80468 4.10912 4.17610 4.18790 4.20491 4.51772 4.87117 5.13411 5.28180 5.29304 5.40518 5.48106 5.48398 5.68817 5.86877 6.19337 6.35346 6.67647 6.76130 6.88172 7.25388 7.42565 8.85552 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.063715 B = 0.002489 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.351584 B =11247.696227 C =11666.601634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.305 3.695 3 C 0.045 3.955 4 C -0.043 4.043 5 C -0.248 4.248 6 C 0.541 3.459 7 O -0.539 6.539 8 O -0.341 6.341 9 C 0.063 3.937 10 C 0.501 3.499 11 O -0.581 6.581 12 N -0.701 5.701 13 C 0.267 3.733 14 C -0.556 4.556 15 H 0.085 0.915 16 C 0.005 3.995 17 N -0.929 5.929 18 Si 0.983 3.017 19 H -0.272 1.272 20 H -0.286 1.286 21 H -0.256 1.256 22 C 0.152 3.848 23 N -0.499 5.499 24 H 0.448 0.552 25 H 0.166 0.834 26 H 0.122 0.878 27 H 0.122 0.878 28 H 0.412 0.588 29 H -0.007 1.007 30 H -0.006 1.006 31 H 0.268 0.732 32 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.257 1.061 0.209 20.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.010 4.010 3 C -0.066 4.066 4 C -0.071 4.071 5 C -0.255 4.255 6 C 0.388 3.612 7 O -0.430 6.430 8 O -0.256 6.256 9 C -0.014 4.014 10 C 0.287 3.713 11 O -0.461 6.461 12 N -0.353 5.353 13 C 0.144 3.856 14 C -0.594 4.594 15 H 0.103 0.897 16 C -0.195 4.195 17 N -0.568 5.568 18 Si 0.806 3.194 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.180 1.180 22 C 0.006 3.994 23 N -0.094 5.094 24 H 0.291 0.709 25 H 0.184 0.816 26 H 0.140 0.860 27 H 0.140 0.860 28 H 0.248 0.752 29 H 0.011 0.989 30 H 0.012 0.988 31 H 0.077 0.923 32 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -22.041 0.280 0.046 22.043 hybrid contribution 1.353 0.302 0.076 1.388 sum -20.689 0.582 0.121 20.697 Atomic orbital electron populations 1.81376 1.12396 1.06750 1.11571 1.24198 0.90634 0.93831 0.92290 1.14854 0.82698 0.89084 1.19994 1.21134 0.89433 0.98740 0.97753 1.18527 0.90255 0.94397 1.22349 1.20505 0.82767 0.85731 0.72211 1.90836 1.87611 1.17393 1.47176 1.86567 1.14308 1.42139 1.82610 1.22689 0.80725 0.91581 1.06422 1.20673 0.85565 0.87903 0.77135 1.90666 1.87881 1.17541 1.50018 1.46049 1.05172 1.13786 1.70252 1.18607 0.81005 0.91418 0.94525 1.21631 0.90794 0.96481 1.50489 0.89677 1.26018 1.02678 0.96742 0.94080 1.70118 1.23600 1.14549 1.48494 0.85184 0.77182 0.78776 0.78241 1.19736 1.21131 1.18001 1.23121 0.87087 0.94885 0.94326 1.41650 1.04912 1.11107 1.51716 0.70939 0.81620 0.85984 0.85975 0.75196 0.98864 0.98842 0.92266 0.76179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.79 18.54 19.00 0.35 -8.44 16 2 C 0.31 4.44 15.88 88.33 1.40 5.85 16 3 C 0.04 0.50 6.90 39.02 0.27 0.77 16 4 C -0.04 -0.62 10.59 22.63 0.24 -0.38 16 5 C -0.25 -4.15 6.13 -20.12 -0.12 -4.27 16 6 C 0.54 12.82 7.95 70.19 0.56 13.38 16 7 O -0.54 -15.07 16.71 19.74 0.33 -14.74 16 8 O -0.34 -9.08 9.59 -50.40 -0.48 -9.56 16 9 C 0.06 1.65 5.95 71.24 0.42 2.07 16 10 C 0.50 18.67 7.91 87.66 0.69 19.36 16 11 O -0.58 -26.96 16.50 15.78 0.26 -26.70 16 12 N -0.70 -27.53 5.55 -466.80 -2.59 -30.12 16 13 C 0.27 13.91 5.43 85.63 0.46 14.38 16 14 C -0.56 -29.03 9.28 25.60 0.24 -28.79 16 15 H 0.09 3.99 7.60 -2.91 -0.02 3.97 16 16 C 0.00 0.25 5.46 84.66 0.46 0.71 16 17 N -0.93 -54.35 13.29 21.45 0.28 -54.07 16 18 Si 0.98 41.14 29.54 68.60 2.03 43.16 16 19 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 20 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 22 C 0.15 1.48 11.76 84.29 0.99 2.47 16 23 N -0.50 -3.03 6.01 -186.45 -1.12 -4.15 16 24 H 0.45 -0.31 8.96 -92.71 -0.83 -1.14 16 25 H 0.17 2.21 8.06 -2.91 -0.02 2.18 16 26 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 27 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 28 H 0.41 13.00 8.32 -92.71 -0.77 12.23 16 29 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 30 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 31 H 0.27 14.70 8.31 -92.71 -0.77 13.92 16 32 H 0.22 1.38 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -77.16 312.14 4.28 -72.88 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -0.40 Total: 6.19 kcal Atomic # 6 Polarization: 19.92 SS G_CDS: 5.62 Total: 25.54 kcal Atomic # 7 Polarization: -93.70 SS G_CDS: -3.07 Total: -96.78 kcal Atomic # 8 Polarization: -51.11 SS G_CDS: 0.11 Total: -51.00 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.16 kcal Total: -77.16 4.28 -72.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786908202.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.263 kcal (2) G-P(sol) polarization free energy of solvation -77.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds