Wall clock time and date at job start Mon Mar 30 2020 02:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47115 * 175.32748 * 3 2 1 5 5 C 1.36881 * 120.00066 * 274.42847 * 4 3 2 6 6 H 1.07997 * 120.00262 * 126.09793 * 5 4 3 7 7 C 1.39006 * 119.99806 * 306.10337 * 5 4 3 8 8 N 1.31399 * 120.00050 * 3.80522 * 7 5 4 9 9 Si 1.86805 * 120.00051 * 183.81522 * 7 5 4 10 10 H 1.48501 * 109.46876 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47627 * 119.99736 * 9 7 5 12 12 H 1.48504 * 109.46522 * 239.99970 * 9 7 5 13 13 C 1.34773 * 119.99858 * 94.42113 * 4 3 2 14 14 O 1.21749 * 119.99926 * 3.75412 * 13 4 3 15 15 C 1.46459 * 120.00087 * 183.74980 * 13 4 3 16 16 S 1.75827 * 125.46046 * 4.97748 * 15 13 4 17 17 C 1.70615 * 91.56785 * 179.97438 * 16 15 13 18 18 C 1.33853 * 110.96563 * 0.02562 * 17 16 15 19 19 C 1.36769 * 125.46021 * 184.97672 * 15 13 4 20 20 C 1.50692 * 123.36352 * 0.02562 * 19 15 13 21 21 C 1.53000 * 109.47570 * 114.54484 * 20 19 15 22 22 C 1.53009 * 109.46916 * 234.54119 * 20 19 15 23 23 H 4.40643 * 5.51475 * 180.02562 * 4 1 2 24 24 H 1.09008 * 109.46921 * 55.32867 * 3 2 1 25 25 H 1.08994 * 109.47324 * 295.33200 * 3 2 1 26 26 H 0.97007 * 120.00181 * 179.97438 * 8 7 5 27 27 H 1.08000 * 124.51353 * 179.97438 * 17 16 15 28 28 H 1.08004 * 122.43985 * 180.02562 * 18 17 16 29 29 H 1.09002 * 109.47373 * 354.54116 * 20 19 15 30 30 H 1.09002 * 109.46756 * 299.99898 * 21 20 19 31 31 H 1.09002 * 109.47074 * 59.99448 * 21 20 19 32 32 H 1.08994 * 109.47326 * 180.02562 * 21 20 19 33 33 H 1.08997 * 109.46676 * 60.00219 * 22 20 19 34 34 H 1.09004 * 109.46940 * 179.97438 * 22 20 19 35 35 H 1.08998 * 109.47320 * 299.99730 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3775 -0.1125 5 6 3.2753 1.9549 -1.3455 6 1 2.7996 2.9012 -1.5566 7 6 4.0313 1.3230 -2.3261 8 7 4.5479 0.1371 -2.0951 9 14 4.3131 2.1600 -3.9722 10 1 3.6300 3.4785 -3.9804 11 1 5.7696 2.3553 -4.1853 12 1 3.7631 1.3112 -5.0595 13 6 3.4428 2.0758 0.9980 14 8 3.3822 1.5408 2.0900 15 6 3.8518 3.4780 0.8913 16 16 3.8700 4.4253 -0.5899 17 6 4.4418 5.8011 0.2416 18 6 4.6013 5.5410 1.5449 19 6 4.2806 4.2606 1.9277 20 6 4.3906 3.7681 3.3476 21 6 5.8601 3.7636 3.7736 22 6 3.5948 4.6927 4.2712 23 1 -1.0502 -0.0004 0.0002 24 1 3.0096 -0.5838 -0.8453 25 1 3.0095 -0.4388 0.9288 26 1 5.0751 -0.3040 -2.7795 27 1 4.6483 6.7543 -0.2221 28 1 4.9554 6.2836 2.2447 29 1 3.9902 2.7564 3.4134 30 1 6.4270 3.1050 3.1156 31 1 6.2605 4.7753 3.7078 32 1 5.9397 3.4069 4.8004 33 1 2.5479 4.6958 3.9678 34 1 3.6740 4.3361 5.2983 35 1 3.9952 5.7043 4.2055 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798800713.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:24 Heat of formation + Delta-G solvation = 44.333965 kcal Electronic energy + Delta-G solvation = -19450.752145 eV Core-core repulsion = 16541.976045 eV Total energy + Delta-G solvation = -2908.776100 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.06622 -37.56589 -35.04553 -33.42329 -32.63661 -31.46503 -29.06187 -26.69343 -26.61418 -25.14254 -23.38121 -21.15232 -20.19096 -18.78767 -17.48997 -16.91219 -16.22107 -15.39466 -14.92090 -14.80062 -14.11780 -14.09013 -13.61863 -13.19920 -12.92076 -12.67341 -12.44689 -12.09774 -11.95914 -11.77068 -11.64891 -11.54265 -11.50139 -11.30572 -10.63764 -10.60076 -10.47642 -10.30351 -9.82130 -9.71322 -9.35110 -8.97023 -8.49675 -7.97850 -7.65210 -7.55710 -6.63702 -4.57145 1.44510 2.53258 2.93596 3.04477 3.08054 3.11509 3.18422 3.46982 3.68802 3.90595 4.29298 4.72678 4.83091 5.32443 5.39285 5.50551 5.71034 5.73630 5.98262 6.01829 6.08552 6.20739 6.24640 6.33456 6.42647 6.61103 6.71561 6.73262 6.74332 6.81063 6.95664 7.14436 7.17910 7.36384 7.81512 8.04211 8.42327 8.75879 9.20944 9.66868 10.35430 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.015967 B = 0.008348 C = 0.006404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.144673 B = 3353.204993 C = 4371.172042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.152 4.152 3 C 0.206 3.794 4 N -0.436 5.436 5 C -0.341 4.341 6 H 0.096 0.904 7 C 0.067 3.933 8 N -0.848 5.848 9 Si 0.907 3.093 10 H -0.256 1.256 11 H -0.271 1.271 12 H -0.274 1.274 13 C 0.557 3.443 14 O -0.581 6.581 15 C -0.224 4.224 16 S 0.273 5.727 17 C -0.320 4.320 18 C -0.147 4.147 19 C -0.053 4.053 20 C -0.064 4.064 21 C -0.133 4.133 22 C -0.134 4.134 23 H 0.207 0.793 24 H 0.131 0.869 25 H 0.086 0.914 26 H 0.278 0.722 27 H 0.145 0.855 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.265 6.179 2.183 6.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.153 4.153 3 C 0.084 3.916 4 N -0.154 5.154 5 C -0.474 4.474 6 H 0.112 0.888 7 C -0.144 4.144 8 N -0.481 5.481 9 Si 0.731 3.269 10 H -0.180 1.180 11 H -0.196 1.196 12 H -0.199 1.199 13 C 0.347 3.653 14 O -0.468 6.468 15 C -0.344 4.344 16 S 0.547 5.453 17 C -0.456 4.456 18 C -0.178 4.178 19 C -0.068 4.068 20 C -0.083 4.083 21 C -0.191 4.191 22 C -0.192 4.192 23 H 0.224 0.776 24 H 0.148 0.852 25 H 0.104 0.896 26 H 0.089 0.911 27 H 0.163 0.837 28 H 0.137 0.863 29 H 0.140 0.860 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.495 5.541 1.059 5.663 hybrid contribution 0.412 0.924 0.480 1.120 sum -0.083 6.465 1.538 6.647 Atomic orbital electron populations 1.24602 0.95637 1.02150 1.05133 1.24341 0.95448 0.98561 0.96976 1.18650 0.81624 0.86876 1.04451 1.43046 1.56053 1.11468 1.04851 1.19162 1.32779 1.05676 0.89791 0.88785 1.25652 0.93221 0.95334 1.00186 1.69653 1.30328 1.12868 1.35270 0.86140 0.79257 0.80407 0.81093 1.17954 1.19590 1.19911 1.17375 0.78688 0.84629 0.84602 1.90530 1.58676 1.70470 1.27102 1.24368 1.13895 0.99045 0.97138 1.84341 1.57637 0.95464 1.07813 1.26316 1.10825 1.07617 1.00864 1.19536 1.06288 0.96646 0.95348 1.19192 0.99479 0.92656 0.95465 1.20288 0.95863 1.03082 0.89116 1.21730 0.96067 1.00939 1.00360 1.21756 1.00074 0.98824 0.98525 0.77582 0.85209 0.89593 0.91113 0.83697 0.86322 0.86013 0.92828 0.93530 0.93040 0.93019 0.93045 0.93458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.00 19.25 29.55 0.57 -4.43 16 2 C -0.15 -3.40 13.64 -37.12 -0.51 -3.90 16 3 C 0.21 4.89 5.60 -6.83 -0.04 4.85 16 4 N -0.44 -10.87 2.41 -119.50 -0.29 -11.16 16 5 C -0.34 -8.26 6.87 -15.01 -0.10 -8.36 16 6 H 0.10 2.21 5.17 -30.03 -0.16 2.06 16 7 C 0.07 1.58 5.38 -17.45 -0.09 1.49 16 8 N -0.85 -20.89 11.28 55.50 0.63 -20.26 16 9 Si 0.91 18.19 29.56 -169.99 -5.02 13.16 16 10 H -0.26 -4.90 7.11 56.52 0.40 -4.49 16 11 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 12 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 13 C 0.56 13.92 7.59 -12.95 -0.10 13.82 16 14 O -0.58 -15.15 13.49 5.14 0.07 -15.08 16 15 C -0.22 -5.01 6.29 -36.80 -0.23 -5.24 16 16 S 0.27 5.38 18.35 -107.50 -1.97 3.41 16 17 C -0.32 -5.54 10.92 29.19 0.32 -5.22 16 18 C -0.15 -2.60 9.18 -41.41 -0.38 -2.98 16 19 C -0.05 -1.05 4.72 -105.45 -0.50 -1.55 16 20 C -0.06 -1.17 3.07 -91.77 -0.28 -1.45 16 21 C -0.13 -2.14 9.09 37.16 0.34 -1.80 16 22 C -0.13 -2.06 8.99 37.16 0.33 -1.73 16 23 H 0.21 3.06 7.80 -54.08 -0.42 2.64 16 24 H 0.13 3.16 5.81 -51.92 -0.30 2.86 16 25 H 0.09 2.04 7.25 -51.93 -0.38 1.66 16 26 H 0.28 6.39 8.31 -40.82 -0.34 6.05 16 27 H 0.15 2.10 8.06 -52.49 -0.42 1.68 16 28 H 0.12 1.83 7.66 -52.48 -0.40 1.43 16 29 H 0.12 2.61 4.95 -51.93 -0.26 2.36 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.67 8.00 -51.93 -0.42 0.26 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.65 7.49 -51.93 -0.39 0.26 16 LS Contribution 310.08 15.07 4.67 4.67 Total: -1.00 -27.03 310.08 -6.56 -33.59 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -3.97 Total: 8.18 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -0.67 Total: -16.50 kcal Atomic # 7 Polarization: -31.76 SS G_CDS: 0.34 Total: -31.43 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.07 Total: -15.08 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.02 Total: 13.16 kcal Atomic # 16 Polarization: 5.38 SS G_CDS: -1.97 Total: 3.41 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.03 -6.56 -33.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798800713.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.919 kcal (2) G-P(sol) polarization free energy of solvation -27.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds