Wall clock time and date at job start Mon Mar 30 2020 02:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47115 * 175.32748 * 3 2 1 5 5 C 1.36881 * 120.00066 * 274.42847 * 4 3 2 6 6 H 1.07997 * 120.00262 * 126.09793 * 5 4 3 7 7 C 1.39006 * 119.99806 * 306.10337 * 5 4 3 8 8 N 1.31399 * 120.00050 * 3.80522 * 7 5 4 9 9 Si 1.86805 * 120.00051 * 183.81522 * 7 5 4 10 10 H 1.48501 * 109.46876 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47627 * 119.99736 * 9 7 5 12 12 H 1.48504 * 109.46522 * 239.99970 * 9 7 5 13 13 C 1.34773 * 119.99858 * 94.42113 * 4 3 2 14 14 O 1.21749 * 119.99926 * 3.75412 * 13 4 3 15 15 C 1.46459 * 120.00087 * 183.74980 * 13 4 3 16 16 S 1.75827 * 125.46046 * 4.97748 * 15 13 4 17 17 C 1.70615 * 91.56785 * 179.97438 * 16 15 13 18 18 C 1.33853 * 110.96563 * 0.02562 * 17 16 15 19 19 C 1.36769 * 125.46021 * 184.97672 * 15 13 4 20 20 C 1.50692 * 123.36352 * 0.02562 * 19 15 13 21 21 C 1.53000 * 109.47570 * 114.54484 * 20 19 15 22 22 C 1.53009 * 109.46916 * 234.54119 * 20 19 15 23 23 H 4.40643 * 5.51475 * 180.02562 * 4 1 2 24 24 H 1.09008 * 109.46921 * 55.32867 * 3 2 1 25 25 H 1.08994 * 109.47324 * 295.33200 * 3 2 1 26 26 H 0.97007 * 120.00181 * 179.97438 * 8 7 5 27 27 H 1.08000 * 124.51353 * 179.97438 * 17 16 15 28 28 H 1.08004 * 122.43985 * 180.02562 * 18 17 16 29 29 H 1.09002 * 109.47373 * 354.54116 * 20 19 15 30 30 H 1.09002 * 109.46756 * 299.99898 * 21 20 19 31 31 H 1.09002 * 109.47074 * 59.99448 * 21 20 19 32 32 H 1.08994 * 109.47326 * 180.02562 * 21 20 19 33 33 H 1.08997 * 109.46676 * 60.00219 * 22 20 19 34 34 H 1.09004 * 109.46940 * 179.97438 * 22 20 19 35 35 H 1.08998 * 109.47320 * 299.99730 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3775 -0.1125 5 6 3.2753 1.9549 -1.3455 6 1 2.7996 2.9012 -1.5566 7 6 4.0313 1.3230 -2.3261 8 7 4.5479 0.1371 -2.0951 9 14 4.3131 2.1600 -3.9722 10 1 3.6300 3.4785 -3.9804 11 1 5.7696 2.3553 -4.1853 12 1 3.7631 1.3112 -5.0595 13 6 3.4428 2.0758 0.9980 14 8 3.3822 1.5408 2.0900 15 6 3.8518 3.4780 0.8913 16 16 3.8700 4.4253 -0.5899 17 6 4.4418 5.8011 0.2416 18 6 4.6013 5.5410 1.5449 19 6 4.2806 4.2606 1.9277 20 6 4.3906 3.7681 3.3476 21 6 5.8601 3.7636 3.7736 22 6 3.5948 4.6927 4.2712 23 1 -1.0502 -0.0004 0.0002 24 1 3.0096 -0.5838 -0.8453 25 1 3.0095 -0.4388 0.9288 26 1 5.0751 -0.3040 -2.7795 27 1 4.6483 6.7543 -0.2221 28 1 4.9554 6.2836 2.2447 29 1 3.9902 2.7564 3.4134 30 1 6.4270 3.1050 3.1156 31 1 6.2605 4.7753 3.7078 32 1 5.9397 3.4069 4.8004 33 1 2.5479 4.6958 3.9678 34 1 3.6740 4.3361 5.2983 35 1 3.9952 5.7043 4.2055 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798800713.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:24 Heat of formation + Delta-G solvation = 30.856508 kcal Electronic energy + Delta-G solvation = -19451.336572 eV Core-core repulsion = 16541.976045 eV Total energy + Delta-G solvation = -2909.360527 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.80198 -39.14216 -36.88299 -34.80046 -34.36508 -33.25645 -30.65084 -28.35198 -27.93223 -26.91186 -24.94321 -22.56681 -21.88139 -20.52517 -19.13384 -18.46628 -17.91808 -17.07755 -16.61742 -16.43292 -15.83360 -15.69815 -15.01669 -14.73083 -14.38003 -14.22683 -14.03534 -13.90401 -13.40608 -13.36924 -13.23703 -13.11011 -12.91485 -12.83412 -12.08698 -11.97661 -11.95684 -11.83113 -11.41819 -11.35338 -11.04861 -10.68032 -10.27339 -9.66065 -9.32766 -9.11337 -8.42171 -6.42485 -0.11098 0.97954 1.37656 1.43345 1.51611 1.57175 1.67610 1.81600 2.00534 2.24108 2.51397 2.94115 3.10407 3.73503 4.03733 4.14490 4.31351 4.40692 4.46694 4.66480 4.70859 4.84603 4.87973 4.96616 4.99987 5.07713 5.15963 5.16335 5.30660 5.34091 5.37775 5.45897 5.69778 5.83321 6.04845 6.22315 6.76574 6.93923 7.37238 7.84130 8.58932 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.015967 B = 0.008348 C = 0.006404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.144673 B = 3353.204993 C = 4371.172042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.220 4.220 3 C 0.210 3.790 4 N -0.446 5.446 5 C -0.355 4.355 6 H 0.101 0.899 7 C 0.027 3.973 8 N -0.882 5.882 9 Si 0.961 3.039 10 H -0.239 1.239 11 H -0.269 1.269 12 H -0.271 1.271 13 C 0.541 3.459 14 O -0.611 6.611 15 C -0.278 4.278 16 S 0.261 5.739 17 C -0.290 4.290 18 C -0.154 4.154 19 C -0.043 4.043 20 C -0.072 4.072 21 C -0.126 4.126 22 C -0.126 4.126 23 H 0.256 0.744 24 H 0.116 0.884 25 H 0.067 0.933 26 H 0.281 0.719 27 H 0.185 0.815 28 H 0.154 0.846 29 H 0.083 0.917 30 H 0.029 0.971 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.037 0.963 34 H 0.068 0.932 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.533 9.310 2.050 9.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.221 4.221 3 C 0.088 3.912 4 N -0.164 5.164 5 C -0.486 4.486 6 H 0.118 0.882 7 C -0.180 4.180 8 N -0.517 5.517 9 Si 0.781 3.219 10 H -0.161 1.161 11 H -0.194 1.194 12 H -0.196 1.196 13 C 0.333 3.667 14 O -0.500 6.500 15 C -0.398 4.398 16 S 0.535 5.465 17 C -0.427 4.427 18 C -0.184 4.184 19 C -0.059 4.059 20 C -0.092 4.092 21 C -0.184 4.184 22 C -0.184 4.184 23 H 0.272 0.728 24 H 0.134 0.866 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.202 0.798 28 H 0.171 0.829 29 H 0.101 0.899 30 H 0.048 0.952 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.780 8.654 0.911 8.736 hybrid contribution 0.449 0.002 0.631 0.774 sum -0.331 8.656 1.542 8.798 Atomic orbital electron populations 1.25635 0.96435 0.98839 1.01585 1.24362 0.95906 1.01681 1.00199 1.18368 0.83285 0.86737 1.02813 1.43275 1.56138 1.11631 1.05346 1.19451 1.33214 1.06317 0.89664 0.88208 1.26435 0.92704 0.95624 1.03189 1.69764 1.31270 1.14159 1.36471 0.85335 0.79255 0.80261 0.77019 1.16112 1.19374 1.19594 1.17888 0.78495 0.86023 0.84271 1.90496 1.60046 1.71581 1.27884 1.24343 1.17555 0.98546 0.99354 1.84064 1.58529 0.96383 1.07492 1.26585 1.07988 1.07733 1.00396 1.19791 1.06277 0.96079 0.96252 1.19652 0.97230 0.93341 0.95672 1.20314 0.97729 1.01789 0.89368 1.21677 0.94001 1.01900 1.00828 1.21693 0.98746 0.99339 0.98575 0.72763 0.86639 0.91455 0.90928 0.79779 0.82855 0.89886 0.95179 0.91139 0.91145 0.94351 0.91275 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.83 19.25 74.32 1.43 -6.40 16 2 C -0.22 -10.18 13.64 31.13 0.42 -9.75 16 3 C 0.21 10.72 5.60 84.57 0.47 11.19 16 4 N -0.45 -23.48 2.41 -650.17 -1.57 -25.05 16 5 C -0.35 -17.72 6.87 84.09 0.58 -17.14 16 6 H 0.10 4.77 5.17 -17.19 -0.09 4.68 16 7 C 0.03 1.33 5.38 84.94 0.46 1.79 16 8 N -0.88 -45.43 11.28 21.67 0.24 -45.18 16 9 Si 0.96 37.07 29.56 68.60 2.03 39.09 16 10 H -0.24 -8.43 7.11 99.48 0.71 -7.72 16 11 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 12 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 13 C 0.54 28.57 7.59 86.38 0.66 29.23 16 14 O -0.61 -34.12 13.49 -4.51 -0.06 -34.18 16 15 C -0.28 -12.67 6.29 24.07 0.15 -12.52 16 16 S 0.26 10.04 18.35 -56.49 -1.04 9.00 16 17 C -0.29 -8.96 10.92 66.82 0.73 -8.23 16 18 C -0.15 -4.91 9.18 21.08 0.19 -4.71 16 19 C -0.04 -1.66 4.72 -20.40 -0.10 -1.76 16 20 C -0.07 -2.59 3.07 -11.54 -0.04 -2.63 16 21 C -0.13 -3.87 9.09 71.98 0.65 -3.21 16 22 C -0.13 -3.60 8.99 71.99 0.65 -2.95 16 23 H 0.26 6.59 7.80 -4.41 -0.03 6.56 16 24 H 0.12 6.10 5.81 -2.38 -0.01 6.08 16 25 H 0.07 3.53 7.25 -2.39 -0.02 3.51 16 26 H 0.28 13.42 8.31 -92.70 -0.77 12.65 16 27 H 0.18 4.27 8.06 -2.91 -0.02 4.25 16 28 H 0.15 3.88 7.66 -2.91 -0.02 3.85 16 29 H 0.08 3.72 4.95 -2.39 -0.01 3.71 16 30 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 1.80 8.00 -2.39 -0.02 1.78 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 1.69 7.49 -2.39 -0.02 1.67 16 Total: -1.00 -62.64 310.08 6.89 -55.75 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 1.02 Total: 27.67 kcal Atomic # 6 Polarization: -33.37 SS G_CDS: 6.26 Total: -27.11 kcal Atomic # 7 Polarization: -68.90 SS G_CDS: -1.32 Total: -70.23 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.06 Total: -34.18 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.09 kcal Atomic # 16 Polarization: 10.04 SS G_CDS: -1.04 Total: 9.00 kcal Total: -62.64 6.89 -55.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798800713.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.605 kcal (2) G-P(sol) polarization free energy of solvation -62.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds