Wall clock time and date at job start Mon Mar 30 2020 02:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47138 * 255.60437 * 3 2 1 5 5 C 1.37104 * 120.00253 * 264.09392 * 4 3 2 6 6 H 1.08000 * 119.99980 * 198.06431 * 5 4 3 7 7 C 1.38948 * 119.99780 * 18.05485 * 5 4 3 8 8 N 1.31406 * 120.00179 * 21.02631 * 7 5 4 9 9 Si 1.86802 * 119.99970 * 201.02355 * 7 5 4 10 10 H 1.48497 * 109.47090 * 90.00460 * 9 7 5 11 11 H 1.48498 * 109.47002 * 210.00331 * 9 7 5 12 12 H 1.48501 * 109.47099 * 330.00017 * 9 7 5 13 13 C 1.34781 * 120.00097 * 84.08675 * 4 3 2 14 14 O 1.21294 * 119.99894 * 0.02562 * 13 4 3 15 15 C 1.50703 * 119.99913 * 180.02562 * 13 4 3 16 16 C 1.53001 * 109.46757 * 180.02562 * 15 13 4 17 17 C 1.53005 * 109.46908 * 179.97438 * 16 15 13 18 18 C 1.50699 * 109.47072 * 179.97438 * 17 16 15 19 19 C 1.38418 * 122.53926 * 270.00402 * 18 17 16 20 20 C 1.33396 * 114.92224 * 180.02562 * 19 18 17 21 21 S 1.75889 * 109.58935 * 359.75134 * 20 19 18 22 22 C 1.33390 * 122.54013 * 90.02022 * 18 17 16 23 23 H 4.40641 * 5.51508 * 179.97438 * 4 1 2 24 24 H 1.09005 * 109.47059 * 135.60774 * 3 2 1 25 25 H 1.08998 * 109.47373 * 15.60071 * 3 2 1 26 26 H 0.97004 * 120.00237 * 179.97438 * 8 7 5 27 27 H 1.08991 * 109.47260 * 60.00264 * 15 13 4 28 28 H 1.09003 * 109.47188 * 299.99673 * 15 13 4 29 29 H 1.09004 * 109.47270 * 60.00270 * 16 15 13 30 30 H 1.08995 * 109.47236 * 300.00107 * 16 15 13 31 31 H 1.08991 * 109.47148 * 59.99986 * 17 16 15 32 32 H 1.08998 * 109.46738 * 299.99362 * 17 16 15 33 33 H 1.07998 * 122.53927 * 0.03707 * 19 18 17 34 34 H 1.07997 * 125.20595 * 180.02562 * 20 19 18 35 35 H 1.08005 * 125.20249 * 359.96364 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.3443 1.3378 5 6 3.4773 1.6389 1.6308 6 1 4.0981 1.8522 2.4885 7 6 3.0264 2.6766 0.8243 8 7 1.9736 2.5029 0.0573 9 14 3.9169 4.3187 0.8302 10 1 4.9816 4.3082 -0.2050 11 1 2.9505 5.4069 0.5352 12 1 4.5265 4.5465 2.1650 13 6 3.2458 -0.6123 2.2807 14 8 2.9426 -1.7578 2.0215 15 6 3.7475 -0.2587 3.6571 16 6 3.7786 -1.5168 4.5273 17 6 4.2886 -1.1579 5.9245 18 6 4.3187 -2.3969 6.7818 19 6 3.2391 -2.7970 7.5503 20 6 3.4316 -3.9159 8.2506 21 16 5.0503 -4.5321 7.9446 22 6 5.3878 -3.1910 6.8579 23 1 -1.0501 0.0002 -0.0001 24 1 3.0090 0.7352 -0.7190 25 1 3.0098 -0.9889 -0.2764 26 1 1.6587 3.2275 -0.5055 27 1 3.0832 0.4787 4.1076 28 1 4.7529 0.1557 3.5821 29 1 4.4433 -2.2539 4.0767 30 1 2.7735 -1.9316 4.6024 31 1 3.6244 -0.4206 6.3754 32 1 5.2938 -0.7434 5.8490 33 1 2.3112 -2.2452 7.5804 34 1 2.7032 -4.3757 8.9021 35 1 6.3170 -3.0364 6.3296 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798804926.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:56 Heat of formation + Delta-G solvation = 50.281623 kcal Electronic energy + Delta-G solvation = -18327.321193 eV Core-core repulsion = 15418.803003 eV Total energy + Delta-G solvation = -2908.518190 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.82112 -38.22392 -35.20839 -33.59229 -31.90115 -31.33239 -29.82994 -27.57222 -26.07042 -24.61710 -23.11976 -21.26035 -19.09952 -18.66868 -17.71310 -17.50380 -16.47063 -15.99473 -15.33626 -14.82606 -14.42180 -14.22519 -13.72111 -13.35528 -13.09758 -12.86595 -12.69393 -12.27748 -12.11260 -11.91211 -11.63054 -11.33389 -11.10934 -11.07839 -11.01813 -10.68335 -10.46875 -10.35278 -10.15774 -9.33929 -9.29886 -8.78314 -8.70499 -8.41002 -8.29660 -7.90259 -6.38536 -3.95816 1.02740 1.67763 1.99047 2.75299 3.08724 3.19361 3.21029 3.75826 3.99338 4.14027 4.30582 4.85733 4.95241 5.01025 5.12110 5.34525 5.42821 5.61665 5.67487 5.72952 5.83453 5.95581 6.04071 6.15358 6.29485 6.40107 6.44540 6.54863 6.74764 6.76509 6.85694 6.89192 7.19963 7.37970 7.68958 8.31005 9.00861 9.04096 9.45864 9.87790 10.61146 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.024373 B = 0.003703 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.555670 B = 7559.757680 C = 8264.761555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.098 4.098 3 C 0.241 3.759 4 N -0.441 5.441 5 C -0.345 4.345 6 H 0.101 0.899 7 C 0.038 3.962 8 N -0.851 5.851 9 Si 0.917 3.083 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.270 1.270 13 C 0.459 3.541 14 O -0.605 6.605 15 C -0.118 4.118 16 C -0.093 4.093 17 C -0.064 4.064 18 C -0.090 4.090 19 C -0.126 4.126 20 C -0.214 4.214 21 S 0.071 5.929 22 C -0.211 4.211 23 H 0.197 0.803 24 H 0.103 0.897 25 H 0.065 0.935 26 H 0.270 0.730 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.141 0.859 34 H 0.161 0.839 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.689 -5.920 11.493 13.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 C -0.099 4.099 3 C 0.119 3.881 4 N -0.159 5.159 5 C -0.472 4.472 6 H 0.119 0.881 7 C -0.169 4.169 8 N -0.487 5.487 9 Si 0.744 3.256 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.249 3.751 14 O -0.492 6.492 15 C -0.158 4.158 16 C -0.131 4.131 17 C -0.104 4.104 18 C -0.102 4.102 19 C -0.157 4.157 20 C -0.349 4.349 21 S 0.334 5.666 22 C -0.346 4.346 23 H 0.214 0.786 24 H 0.121 0.879 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.158 0.842 34 H 0.179 0.821 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.277 -7.620 11.726 14.947 hybrid contribution -0.799 2.349 -0.557 2.543 sum 4.478 -5.270 11.169 13.137 Atomic orbital electron populations 1.24171 0.95314 1.07368 1.02560 1.23159 0.94368 0.94429 0.97955 1.18034 0.84222 0.99163 0.86724 1.43721 1.55897 1.07831 1.08475 1.19619 1.31187 0.81343 1.15096 0.88087 1.25286 0.94855 0.99545 0.97192 1.70120 1.19040 1.33602 1.25942 0.86086 0.79222 0.81382 0.78911 1.20279 1.21065 1.19429 1.20284 0.82924 0.85419 0.86482 1.90539 1.56185 1.20846 1.81606 1.21374 1.02278 0.98254 0.93865 1.21271 1.02143 0.97563 0.92109 1.20440 1.02232 0.93173 0.94505 1.19063 0.92917 0.99009 0.99229 1.20185 1.00116 0.97361 0.97993 1.25542 1.00155 1.01551 1.07681 1.84136 1.10345 1.28115 1.44029 1.25445 1.03703 0.99194 1.06295 0.78585 0.87941 0.91671 0.91968 0.89866 0.90300 0.91702 0.91621 0.90878 0.91032 0.84163 0.82095 0.81943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.41 19.25 29.55 0.57 -5.84 16 2 C -0.10 -2.46 11.52 -37.12 -0.43 -2.89 16 3 C 0.24 5.95 5.06 -6.83 -0.03 5.92 16 4 N -0.44 -11.06 2.60 -117.93 -0.31 -11.36 16 5 C -0.35 -8.50 9.12 -14.93 -0.14 -8.64 16 6 H 0.10 2.32 6.57 -52.49 -0.34 1.97 16 7 C 0.04 0.92 4.87 -17.47 -0.09 0.84 16 8 N -0.85 -21.96 9.47 55.50 0.53 -21.43 16 9 Si 0.92 18.93 29.60 -169.99 -5.03 13.89 16 10 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 11 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 12 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 13 C 0.46 11.04 7.57 -10.98 -0.08 10.95 16 14 O -0.61 -16.00 15.66 5.54 0.09 -15.92 16 15 C -0.12 -2.23 4.16 -27.88 -0.12 -2.34 16 16 C -0.09 -1.54 4.49 -26.73 -0.12 -1.66 16 17 C -0.06 -0.83 5.47 -27.88 -0.15 -0.99 16 18 C -0.09 -1.16 5.05 -106.25 -0.54 -1.70 16 19 C -0.13 -1.52 9.98 -41.21 -0.41 -1.93 16 20 C -0.21 -2.33 11.23 29.04 0.33 -2.00 16 21 S 0.07 0.76 23.34 -107.50 -2.51 -1.75 16 22 C -0.21 -2.54 10.98 29.04 0.32 -2.23 16 23 H 0.20 3.74 7.80 -54.09 -0.42 3.32 16 24 H 0.10 2.53 6.47 -51.93 -0.34 2.20 16 25 H 0.07 1.55 7.61 -51.93 -0.39 1.15 16 26 H 0.27 6.66 8.31 -40.82 -0.34 6.33 16 27 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 28 H 0.08 1.37 7.68 -51.93 -0.40 0.98 16 29 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 30 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 31 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 32 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 33 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.16 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 319.90 15.07 4.82 4.82 Total: -1.00 -29.63 319.90 -7.71 -37.34 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -4.40 Total: 6.91 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -0.89 Total: -12.51 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: 0.22 Total: -32.79 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: 0.09 Total: -15.92 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.89 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.51 Total: -1.75 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.63 -7.71 -37.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798804926.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.621 kcal (2) G-P(sol) polarization free energy of solvation -29.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds