Wall clock time and date at job start Mon Mar 30 2020 02:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47042 * 2 1 4 4 C 1.50704 * 109.47102 * 240.00490 * 2 1 3 5 5 O 1.21217 * 119.99693 * 240.00422 * 4 2 1 6 6 O 1.34306 * 120.00267 * 59.99723 * 4 2 1 7 7 C 1.34914 * 117.00180 * 180.02562 * 6 4 2 8 8 H 1.08006 * 120.00527 * 359.97438 * 7 6 4 9 9 C 1.38753 * 120.00319 * 180.02562 * 7 6 4 10 10 N 1.31441 * 119.99829 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00344 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46986 * 59.99899 * 11 9 7 13 13 H 1.48497 * 109.47531 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47082 * 299.99977 * 11 9 7 15 15 C 1.50697 * 109.46924 * 120.00471 * 2 1 3 16 16 C 1.38344 * 119.91293 * 359.97382 * 15 2 1 17 17 C 1.38556 * 120.27923 * 180.02562 * 16 15 2 18 18 F 1.35102 * 119.94716 * 179.97438 * 17 16 15 19 19 C 1.38193 * 120.09941 * 359.97438 * 17 16 15 20 20 C 1.39582 * 119.82044 * 0.02562 * 19 17 16 21 21 C 1.43208 * 120.13685 * 179.97438 * 20 19 17 22 22 N 5.95768 * 144.45587 * 119.99473 * 2 1 3 23 23 C 1.37935 * 119.90859 * 180.02562 * 15 2 1 24 24 H 1.08997 * 109.47272 * 299.99631 * 1 2 3 25 25 H 1.09006 * 109.46770 * 59.99896 * 1 2 3 26 26 H 1.09005 * 109.46761 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46887 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47294 * 299.99953 * 3 2 1 29 29 H 1.08997 * 109.46786 * 60.00071 * 3 2 1 30 30 H 0.97010 * 119.99910 * 180.02562 * 10 9 7 31 31 H 1.07995 * 119.85794 * 0.02814 * 16 15 2 32 32 H 1.08006 * 120.08911 * 179.97438 * 19 17 16 33 33 H 1.08004 * 120.05109 * 359.69717 * 23 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 8 2.7292 -1.6959 -1.1194 6 8 1.7079 -0.2514 -2.4504 7 6 2.1899 -0.9339 -3.5097 8 1 2.8070 -1.8066 -3.3546 9 6 1.8936 -0.5140 -4.7986 10 7 1.1430 0.5483 -4.9875 11 14 2.5615 -1.4585 -6.2654 12 1 2.0654 -2.8575 -6.2208 13 1 2.1038 -0.8113 -7.5210 14 1 4.0459 -1.4580 -6.2202 15 6 2.0323 -0.7105 1.2304 16 6 1.1317 -1.2352 2.1401 17 6 1.5851 -1.8894 3.2741 18 9 0.6997 -2.3988 4.1583 19 6 2.9417 -2.0217 3.5021 20 6 3.8541 -1.4939 2.5871 21 6 5.2613 -1.6267 2.8169 22 7 6.3776 -1.7314 2.9995 23 6 3.3889 -0.8350 1.4471 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.9356 0.8416 -5.8886 31 1 0.0707 -1.1344 1.9654 32 1 3.2950 -2.5314 4.3864 33 1 4.0901 -0.4282 0.7335 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000803924643.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:01 Heat of formation + Delta-G solvation = -91.837052 kcal Electronic energy + Delta-G solvation = -20807.274766 eV Core-core repulsion = 17326.380671 eV Total energy + Delta-G solvation = -3480.894095 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.090 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.90944 -41.71619 -40.25121 -38.00212 -37.12999 -36.12673 -34.23582 -32.22535 -31.06600 -28.42302 -27.63228 -25.58613 -24.38737 -23.76589 -21.45056 -19.79792 -19.43233 -18.05437 -17.66076 -17.44216 -17.18845 -16.73282 -16.49405 -16.33727 -16.25782 -15.27890 -15.06008 -14.75751 -14.63626 -14.42781 -14.12255 -13.66606 -13.57843 -13.24939 -13.21220 -13.02587 -12.99390 -12.82411 -12.65255 -12.35430 -12.20023 -12.12416 -11.95529 -11.83526 -10.81707 -10.66109 -10.09444 -9.79044 -8.50882 -6.29215 -0.44595 0.02506 1.33179 1.35235 1.44908 1.49257 1.66513 1.68830 2.12754 2.49231 2.60684 2.86874 3.00821 3.18106 3.41158 3.82245 3.89044 3.99071 4.02207 4.14068 4.32682 4.55800 4.74059 4.79094 4.83805 4.89057 4.92238 4.98126 5.05016 5.18548 5.22743 5.34526 5.42477 5.66524 5.86446 6.27755 6.71044 6.95249 7.81656 8.68792 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.020986 B = 0.004896 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.899708 B = 5717.621075 C = 6364.892483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.003 4.003 3 C -0.135 4.135 4 C 0.403 3.597 5 O -0.576 6.576 6 O -0.232 6.232 7 C -0.419 4.419 8 H 0.078 0.922 9 C 0.001 3.999 10 N -0.898 5.898 11 Si 1.008 2.992 12 H -0.264 1.264 13 H -0.261 1.261 14 H -0.266 1.266 15 C -0.042 4.042 16 C -0.105 4.105 17 C 0.100 3.900 18 F -0.130 7.130 19 C -0.091 4.091 20 C -0.007 4.007 21 C 0.280 3.720 22 N -0.449 5.449 23 C -0.053 4.053 24 H 0.114 0.886 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.107 0.893 30 H 0.278 0.722 31 H 0.171 0.829 32 H 0.171 0.829 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.403 0.329 14.814 15.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.004 4.004 3 C -0.192 4.192 4 C 0.250 3.750 5 O -0.473 6.473 6 O -0.140 6.140 7 C -0.495 4.495 8 H 0.096 0.904 9 C -0.200 4.200 10 N -0.535 5.535 11 Si 0.828 3.172 12 H -0.188 1.188 13 H -0.184 1.184 14 H -0.190 1.190 15 C -0.042 4.042 16 C -0.124 4.124 17 C 0.080 3.920 18 F -0.109 7.109 19 C -0.112 4.112 20 C -0.011 4.011 21 C -0.034 4.034 22 N -0.125 5.125 23 C -0.073 4.073 24 H 0.132 0.868 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.087 0.913 31 H 0.188 0.812 32 H 0.188 0.812 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.622 0.037 14.972 15.059 hybrid contribution 0.019 -0.562 -1.043 1.185 sum -1.603 -0.525 13.928 14.030 Atomic orbital electron populations 1.22003 0.89707 1.03318 1.04825 1.19275 0.99131 0.96234 0.85746 1.21894 1.01248 0.91483 1.04538 1.24145 0.80214 0.84196 0.86405 1.90553 1.40119 1.28857 1.87777 1.83875 1.64414 1.52162 1.13572 1.21294 1.33216 1.11592 0.83350 0.90422 1.26347 0.96104 0.97287 1.00217 1.70049 1.35459 1.24019 1.23943 0.84812 0.78717 0.78037 0.75640 1.18833 1.18442 1.19027 1.19016 0.92521 0.98293 0.94377 1.21540 1.02626 0.96145 0.92114 1.17160 0.86495 0.99024 0.89284 1.91546 1.67545 1.84998 1.66775 1.21222 0.90521 0.99270 1.00200 1.15465 0.84268 1.04252 0.97089 1.25579 0.92509 0.92744 0.92611 1.81249 1.12512 1.09577 1.09133 1.21032 0.95927 0.95841 0.94545 0.86797 0.92045 0.91919 0.92665 0.91983 0.87386 0.91307 0.81160 0.81165 0.86076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 7.06 71.98 0.51 -3.18 16 2 C 0.00 -0.08 0.79 -53.67 -0.04 -0.13 16 3 C -0.13 -3.70 8.22 71.98 0.59 -3.11 16 4 C 0.40 18.65 6.37 71.24 0.45 19.10 16 5 O -0.58 -29.47 14.34 20.75 0.30 -29.17 16 6 O -0.23 -12.83 9.55 14.98 0.14 -12.69 16 7 C -0.42 -24.53 9.64 67.94 0.66 -23.87 16 8 H 0.08 4.67 6.86 -2.91 -0.02 4.65 16 9 C 0.00 0.07 5.49 84.87 0.47 0.54 16 10 N -0.90 -51.17 13.67 21.62 0.30 -50.88 16 11 Si 1.01 42.70 29.55 68.60 2.03 44.73 16 12 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 13 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 14 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 15 C -0.04 -1.12 4.38 -19.91 -0.09 -1.21 16 16 C -0.11 -2.21 8.95 22.37 0.20 -2.01 16 17 C 0.10 1.94 7.29 22.33 0.16 2.10 16 18 F -0.13 -2.46 17.26 44.97 0.78 -1.68 16 19 C -0.09 -1.71 9.73 22.58 0.22 -1.49 16 20 C -0.01 -0.17 5.73 -21.37 -0.12 -0.29 16 21 C 0.28 7.47 15.33 88.33 1.35 8.83 16 22 N -0.45 -13.77 18.54 19.01 0.35 -13.41 16 23 C -0.05 -1.47 7.63 22.54 0.17 -1.29 16 24 H 0.11 1.88 7.51 -2.39 -0.02 1.87 16 25 H 0.06 1.87 8.11 -2.38 -0.02 1.86 16 26 H 0.06 1.62 7.51 -2.38 -0.02 1.60 16 27 H 0.05 1.55 7.38 -2.39 -0.02 1.53 16 28 H 0.06 1.95 8.11 -2.39 -0.02 1.94 16 29 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.28 14.46 8.31 -92.70 -0.77 13.69 16 31 H 0.17 2.81 5.87 -2.91 -0.02 2.79 16 32 H 0.17 2.26 8.06 -2.91 -0.02 2.23 16 33 H 0.12 3.77 7.50 -2.91 -0.02 3.74 16 Total: -1.00 -70.63 304.21 9.58 -61.05 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 1.16 Total: 8.07 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: 4.53 Total: -6.02 kcal Atomic # 7 Polarization: -64.94 SS G_CDS: 0.65 Total: -64.29 kcal Atomic # 8 Polarization: -42.30 SS G_CDS: 0.44 Total: -41.86 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.78 Total: -1.68 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -70.63 9.58 -61.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803924643.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.792 kcal (2) G-P(sol) polarization free energy of solvation -70.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds