Wall clock time and date at job start Mon Mar 30 2020 01:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39627 * 120.14083 * 25.22872 * 3 2 1 5 5 C 1.38150 * 119.82255 * 179.97438 * 4 3 2 6 6 F 1.35096 * 119.95346 * 180.02562 * 5 4 3 7 7 C 1.38608 * 120.09793 * 0.03063 * 5 4 3 8 8 C 1.38305 * 120.27740 * 359.69141 * 7 5 4 9 9 C 1.37975 * 120.17894 * 0.56309 * 8 7 5 10 10 C 1.50703 * 120.04998 * 179.74485 * 9 8 7 11 11 O 1.45199 * 109.46928 * 359.72005 * 10 9 8 12 12 C 1.34230 * 116.99614 * 179.97438 * 11 10 9 13 13 O 1.20824 * 120.00179 * 0.02562 * 12 11 10 14 14 C 1.50706 * 119.99717 * 179.97438 * 12 11 10 15 15 C 1.53003 * 109.47116 * 180.02562 * 14 12 11 16 16 C 1.50693 * 109.47172 * 180.02562 * 15 14 12 17 17 H 1.08006 * 120.00258 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00172 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99838 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00094 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47197 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47002 * 120.00365 * 20 18 16 23 23 H 1.48497 * 109.46906 * 239.99781 * 20 18 16 24 24 H 1.08005 * 120.08753 * 359.95614 * 4 3 2 25 25 H 1.07994 * 119.86070 * 180.02562 * 7 5 4 26 26 H 1.07998 * 119.90725 * 180.29922 * 8 7 5 27 27 H 1.09002 * 109.47152 * 239.72038 * 10 9 8 28 28 H 1.09001 * 109.46980 * 119.72138 * 10 9 8 29 29 H 1.09000 * 109.47303 * 300.00327 * 14 12 11 30 30 H 1.09003 * 109.46535 * 60.00663 * 14 12 11 31 31 H 1.09000 * 109.47151 * 300.00236 * 15 14 12 32 32 H 1.09003 * 109.46860 * 60.00013 * 15 14 12 33 33 H 0.96999 * 120.00252 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2696 -1.0914 -0.5147 5 6 4.6511 -1.0836 -0.5119 6 9 5.3326 -2.1385 -1.0097 7 6 5.3390 0.0050 0.0010 8 6 4.6482 1.0913 0.5066 9 6 3.2685 1.0934 0.5142 10 6 2.5187 2.2761 1.0711 11 8 3.4655 3.2722 1.5398 12 6 2.9559 4.3960 2.0683 13 8 1.7586 4.5423 2.1374 14 6 3.8774 5.4748 2.5765 15 6 3.0478 6.6380 3.1240 16 6 3.9692 7.7170 3.6316 17 1 5.0395 7.5864 3.5696 18 6 3.4459 8.8714 4.1744 19 7 2.1426 9.0310 4.2486 20 14 4.5881 10.2092 4.8030 21 1 5.9986 9.7893 4.6046 22 1 4.3365 11.4668 4.0544 23 1 4.3370 10.4352 6.2490 24 1 2.7337 -1.9400 -0.9136 25 1 6.4189 0.0072 0.0009 26 1 5.1903 1.9383 0.9003 27 1 1.8924 1.9509 1.9018 28 1 1.8921 2.7089 0.2913 29 1 4.5057 5.0716 3.3707 30 1 4.5066 5.8295 1.7601 31 1 2.4192 7.0413 2.3301 32 1 2.4188 6.2830 3.9404 33 1 1.7744 9.8430 4.6307 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812614352.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:07 Heat of formation + Delta-G solvation = -88.721104 kcal Electronic energy + Delta-G solvation = -19494.251480 eV Core-core repulsion = 16013.492503 eV Total energy + Delta-G solvation = -3480.758977 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.090 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.35097 -40.47662 -39.59582 -36.77437 -36.33490 -33.65150 -32.37864 -31.94350 -31.13736 -27.25845 -25.72146 -24.60606 -22.73676 -21.75788 -20.05230 -19.51270 -17.62382 -16.92394 -16.88376 -16.53886 -16.30885 -16.04436 -16.02947 -15.02285 -14.58081 -14.49975 -14.20364 -14.07872 -13.83407 -13.56058 -13.06350 -12.67874 -12.67306 -12.30599 -12.13935 -11.99749 -11.68955 -11.26129 -11.01752 -10.75171 -10.66413 -10.12243 -10.04885 -9.64681 -9.61813 -9.21606 -9.07675 -8.42381 -6.05738 -4.11028 0.12608 0.60330 2.24770 2.43565 2.68650 2.77206 3.25761 3.26165 3.28129 3.35781 3.38844 3.82293 4.17734 4.29781 4.40659 4.44416 4.73408 4.98384 5.06457 5.17618 5.29988 5.30444 5.42111 5.48868 5.68901 5.86249 6.03187 6.10263 6.22872 6.50502 6.80187 7.05781 7.61442 7.66993 7.92921 8.13868 8.31318 8.96295 9.53536 11.05250 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.030519 B = 0.002996 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.251518 B = 9344.409779 C =10235.911606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C 0.245 3.755 3 C 0.007 3.993 4 C -0.105 4.105 5 C 0.098 3.902 6 F -0.133 7.133 7 C -0.120 4.120 8 C -0.068 4.068 9 C -0.047 4.047 10 C 0.097 3.903 11 O -0.362 6.362 12 C 0.458 3.542 13 O -0.500 6.500 14 C -0.101 4.101 15 C 0.032 3.968 16 C -0.529 4.529 17 H 0.060 0.940 18 C 0.059 3.941 19 N -0.889 5.889 20 Si 0.896 3.104 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.283 1.283 24 H 0.148 0.852 25 H 0.148 0.852 26 H 0.159 0.841 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.698 -20.465 -9.636 23.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.068 5.068 2 C -0.071 4.071 3 C 0.004 3.996 4 C -0.126 4.126 5 C 0.078 3.922 6 F -0.112 7.112 7 C -0.140 4.140 8 C -0.085 4.085 9 C -0.050 4.050 10 C 0.023 3.977 11 O -0.280 6.280 12 C 0.301 3.699 13 O -0.386 6.386 14 C -0.139 4.139 15 C -0.006 4.006 16 C -0.567 4.567 17 H 0.078 0.922 18 C -0.144 4.144 19 N -0.527 5.527 20 Si 0.723 3.277 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.166 0.834 25 H 0.165 0.835 26 H 0.177 0.823 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.422 -20.358 -9.588 23.147 hybrid contribution 0.865 0.471 0.222 1.010 sum 6.288 -19.887 -9.366 22.864 Atomic orbital electron populations 1.81320 1.11692 1.06545 1.07243 1.25453 0.92413 0.94579 0.94608 1.15304 0.84560 0.95498 1.04269 1.20993 0.92552 0.98603 1.00481 1.17425 0.89418 0.85792 0.99543 1.91545 1.79662 1.54781 1.85164 1.21494 1.01795 0.92379 0.98301 1.20979 0.92562 0.98388 0.96616 1.19767 0.94502 0.93407 0.97279 1.21608 0.90404 0.85841 0.99847 1.86498 1.40546 1.28298 1.72699 1.24880 0.90073 0.81167 0.73735 1.90671 1.17420 1.78401 1.52074 1.21799 0.98105 0.92424 1.01558 1.19041 0.94785 0.89799 0.96940 1.21171 0.92999 1.01746 1.40791 0.92197 1.25028 0.95064 0.98436 0.95827 1.69998 1.10751 1.27137 1.44817 0.86483 0.80915 0.81726 0.78546 1.19611 1.20965 1.20959 0.83416 0.83468 0.82312 0.89348 0.89349 0.88728 0.88731 0.95555 0.95553 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -5.17 18.54 41.84 0.78 -4.40 16 2 C 0.25 2.61 14.38 -22.47 -0.32 2.29 16 3 C 0.01 0.06 5.73 -106.94 -0.61 -0.55 16 4 C -0.11 -0.72 9.73 -39.10 -0.38 -1.10 16 5 C 0.10 0.68 7.29 -39.48 -0.29 0.39 16 6 F -0.13 -1.02 17.26 2.25 0.04 -0.98 16 7 C -0.12 -0.76 10.02 -39.42 -0.39 -1.15 16 8 C -0.07 -0.51 9.37 -39.65 -0.37 -0.89 16 9 C -0.05 -0.43 5.91 -104.20 -0.62 -1.04 16 10 C 0.10 1.17 4.86 36.01 0.18 1.34 16 11 O -0.36 -5.02 8.69 -39.26 -0.34 -5.36 16 12 C 0.46 8.24 7.96 36.01 0.29 8.52 16 13 O -0.50 -10.84 15.73 -18.75 -0.29 -11.13 16 14 C -0.10 -1.90 5.75 -27.88 -0.16 -2.06 16 15 C 0.03 0.80 4.26 -27.88 -0.12 0.68 16 16 C -0.53 -14.32 9.11 -34.44 -0.31 -14.64 16 17 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 20 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H 0.15 0.76 8.06 -52.48 -0.42 0.33 16 25 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 26 H 0.16 1.15 6.98 -52.49 -0.37 0.79 16 27 H 0.09 1.10 8.13 -51.93 -0.42 0.68 16 28 H 0.09 1.10 8.13 -51.93 -0.42 0.68 16 29 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 30 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 31 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 32 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 312.10 15.07 4.70 4.70 Total: -1.00 -32.19 312.10 -5.90 -38.10 By element: Atomic # 1 Polarization: -1.10 SS G_CDS: -3.28 Total: -4.38 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -3.22 Total: -6.67 kcal Atomic # 7 Polarization: -31.74 SS G_CDS: 1.51 Total: -30.23 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.64 Total: -16.49 kcal Atomic # 9 Polarization: -1.02 SS G_CDS: 0.04 Total: -0.98 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.19 -5.90 -38.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614352.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.625 kcal (2) G-P(sol) polarization free energy of solvation -32.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds