Wall clock time and date at job start Mon Mar 30 2020 01:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38581 * 120.02761 * 2 1 4 4 C 1.37982 * 120.89491 * 180.94057 * 3 2 1 5 5 C 1.39451 * 119.81633 * 0.16992 * 4 3 2 6 6 C 1.39448 * 118.65064 * 358.25404 * 5 4 3 7 7 C 1.38164 * 121.48442 * 2.31003 * 6 5 4 8 8 S 1.77794 * 117.70219 * 182.54386 * 6 5 4 9 9 C 1.81609 * 101.88805 * 295.03788 * 8 6 5 10 10 C 1.52021 * 110.21366 * 80.91183 * 9 8 6 11 11 C 1.50523 * 115.50110 * 288.86790 * 10 9 8 12 12 N 1.38977 * 119.62827 * 176.75774 * 5 4 3 13 13 C 1.34775 * 120.88255 * 75.37437 * 12 5 4 14 14 O 1.21829 * 120.00037 * 180.02562 * 13 12 5 15 15 C 1.41491 * 119.99814 * 0.04944 * 13 12 5 16 16 H 1.08001 * 120.00310 * 359.97438 * 15 13 12 17 17 C 1.40146 * 119.99698 * 180.02562 * 15 13 12 18 18 N 1.30632 * 120.00058 * 359.97438 * 17 15 13 19 19 Si 1.86806 * 119.99786 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46977 * 89.99768 * 19 17 15 21 21 H 1.48496 * 109.46866 * 209.99424 * 19 17 15 22 22 H 1.48490 * 109.47052 * 329.99654 * 19 17 15 23 23 H 1.09002 * 109.47136 * 89.99633 * 1 2 3 24 24 H 1.09003 * 109.47232 * 209.99636 * 1 2 3 25 25 H 1.09001 * 109.46994 * 329.99542 * 1 2 3 26 26 H 1.08004 * 119.55785 * 0.96754 * 3 2 1 27 27 H 1.08005 * 120.09203 * 180.19236 * 4 3 2 28 28 H 1.07996 * 120.41433 * 178.77103 * 7 6 5 29 29 H 1.09008 * 109.34582 * 320.68975 * 9 8 6 30 30 H 1.08998 * 109.34958 * 201.14756 * 9 8 6 31 31 H 1.09004 * 108.27473 * 167.30651 * 10 9 8 32 32 H 1.08997 * 108.27552 * 50.42896 * 10 9 8 33 33 H 1.09002 * 109.15258 * 187.49891 * 11 10 9 34 34 H 1.08999 * 109.14898 * 306.71744 * 11 10 9 35 35 H 0.96996 * 119.99385 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2005 1.1998 0.0000 4 6 3.5800 1.2208 -0.0194 5 6 4.2914 0.0216 -0.0430 6 6 3.5812 -1.1779 -0.0090 7 6 2.1997 -1.1986 -0.0005 8 16 4.5149 -2.6905 0.0298 9 6 5.3478 -2.6574 -1.5837 10 6 6.5770 -1.7651 -1.5222 11 6 6.3016 -0.2887 -1.4221 12 7 5.6782 0.0471 -0.1308 13 6 6.4332 0.3715 0.9374 14 8 7.6476 0.3892 0.8423 15 6 5.8153 0.6911 2.1696 16 1 4.7387 0.6754 2.2539 17 6 6.6004 1.0290 3.2802 18 7 7.9026 1.0484 3.1781 19 14 5.7847 1.4502 4.9071 20 1 5.6191 0.2136 5.7126 21 1 6.6333 2.4154 5.6510 22 1 4.4535 2.0562 4.6511 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6539 2.1312 0.0159 27 1 4.1074 2.1633 -0.0161 28 1 1.6670 -2.1380 0.0060 29 1 4.6601 -2.2733 -2.3373 30 1 5.6491 -3.6691 -1.8554 31 1 7.1728 -1.9417 -2.4177 32 1 7.1714 -2.0613 -0.6579 33 1 7.2399 0.2575 -1.5189 34 1 5.6316 0.0057 -2.2299 35 1 8.4458 1.2819 3.9469 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818027481.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:17 Heat of formation + Delta-G solvation = -8.396565 kcal Electronic energy + Delta-G solvation = -19703.051042 eV Core-core repulsion = 16791.988375 eV Total energy + Delta-G solvation = -2911.062668 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.50429 -37.51897 -34.99674 -33.09988 -32.52001 -30.73515 -30.49644 -27.45502 -26.34164 -24.93433 -22.51973 -21.55622 -21.36365 -19.08212 -17.65905 -16.36270 -15.82328 -15.59149 -15.10216 -14.44466 -14.22528 -14.11946 -13.69905 -13.55523 -13.32108 -12.90427 -12.61872 -12.46664 -12.05118 -11.81927 -11.67720 -11.44789 -11.17078 -11.11109 -10.87713 -10.68126 -10.55780 -10.28490 -10.21525 -9.69474 -8.89405 -8.56450 -8.35927 -7.66985 -7.33180 -7.07397 -6.25984 -4.75532 1.45894 1.73825 2.24942 3.01919 3.12015 3.19252 3.22971 4.03453 4.07635 4.36494 4.48010 5.05754 5.12596 5.21266 5.28952 5.44114 5.55928 5.62810 5.69391 5.75332 5.82488 5.87120 5.96242 6.01081 6.12340 6.19449 6.37668 6.45998 6.58762 6.71044 6.85112 6.97528 7.15540 7.37451 7.79978 8.13039 8.26501 8.95168 9.42099 10.49349 10.70725 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.014451 B = 0.008898 C = 0.006559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.118015 B = 3146.052018 C = 4268.122192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.114 4.114 3 C -0.099 4.099 4 C -0.119 4.119 5 C 0.224 3.776 6 C -0.116 4.116 7 C -0.071 4.071 8 S -0.154 6.154 9 C -0.089 4.089 10 C -0.138 4.138 11 C 0.129 3.871 12 N -0.603 5.603 13 C 0.566 3.434 14 O -0.574 6.574 15 C -0.530 4.530 16 H 0.069 0.931 17 C 0.091 3.909 18 N -0.752 5.752 19 Si 0.904 3.096 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.263 1.263 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.119 0.881 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.050 0.950 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.485 -2.882 -7.853 14.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.116 4.116 3 C -0.118 4.118 4 C -0.141 4.141 5 C 0.127 3.873 6 C -0.229 4.229 7 C -0.093 4.093 8 S 0.081 5.919 9 C -0.237 4.237 10 C -0.179 4.179 11 C 0.006 3.994 12 N -0.337 5.337 13 C 0.377 3.623 14 O -0.457 6.457 15 C -0.565 4.565 16 H 0.087 0.913 17 C -0.131 4.131 18 N -0.380 5.380 19 Si 0.729 3.271 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.187 1.187 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.137 0.863 27 H 0.146 0.854 28 H 0.144 0.856 29 H 0.096 0.904 30 H 0.118 0.882 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.069 0.931 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.407 -3.710 -6.996 13.077 hybrid contribution -0.521 1.108 -0.018 1.224 sum -10.928 -2.602 -7.015 13.244 Atomic orbital electron populations 1.20680 0.91336 1.02431 1.01727 1.19874 0.95646 0.92846 1.03246 1.20949 0.93841 0.97255 0.99749 1.21671 0.93676 0.98315 1.00414 1.17607 0.85198 0.91177 0.93314 1.22106 0.95739 0.95582 1.09513 1.20846 0.91786 0.97625 0.99002 1.85596 1.56549 1.24277 1.25446 1.23291 1.00125 1.03406 0.96889 1.21522 0.96836 0.96418 1.03116 1.20720 0.99149 0.94013 0.85521 1.45974 1.01897 1.74235 1.11575 1.16796 0.86012 0.77378 0.82094 1.90653 1.13489 1.58372 1.83231 1.20047 0.94413 1.47691 0.94392 0.91298 1.25735 0.94387 0.92993 1.00011 1.70021 1.04974 1.32781 1.30254 0.86407 0.80071 0.78946 0.81717 1.19490 1.20319 1.18681 0.91728 0.91858 0.91823 0.86306 0.85415 0.85550 0.90427 0.88167 0.91583 0.90145 0.89587 0.93123 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.10 10.02 36.01 0.36 -0.74 16 2 C -0.11 -1.65 5.90 -104.42 -0.62 -2.26 16 3 C -0.10 -1.52 9.66 -39.55 -0.38 -1.90 16 4 C -0.12 -2.23 9.06 -39.22 -0.36 -2.58 16 5 C 0.22 4.65 3.74 -83.72 -0.31 4.34 16 6 C -0.12 -2.20 5.72 -39.16 -0.22 -2.42 16 7 C -0.07 -1.13 9.52 -39.54 -0.38 -1.51 16 8 S -0.15 -2.89 21.47 -107.50 -2.31 -5.19 16 9 C -0.09 -1.38 6.14 36.66 0.23 -1.16 16 10 C -0.14 -2.40 5.35 -28.47 -0.15 -2.56 16 11 C 0.13 2.52 5.59 -4.86 -0.03 2.50 16 12 N -0.60 -13.98 2.09 -117.41 -0.25 -14.23 16 13 C 0.57 16.10 7.42 -15.02 -0.11 15.98 16 14 O -0.57 -18.32 14.54 5.07 0.07 -18.25 16 15 C -0.53 -15.09 8.52 -37.63 -0.32 -15.41 16 16 H 0.07 1.89 6.32 -52.49 -0.33 1.56 16 17 C 0.09 2.54 5.50 -17.35 -0.10 2.45 16 18 N -0.75 -22.33 11.72 55.56 0.65 -21.68 16 19 Si 0.90 20.46 29.56 -169.99 -5.02 15.43 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 25 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 26 H 0.12 1.50 8.06 -52.48 -0.42 1.07 16 27 H 0.13 2.41 8.06 -52.48 -0.42 1.99 16 28 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 29 H 0.08 1.10 8.13 -51.92 -0.42 0.68 16 30 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.08 1.68 8.11 -51.93 -0.42 1.26 16 33 H 0.09 1.80 7.49 -51.93 -0.39 1.41 16 34 H 0.05 0.86 8.00 -51.93 -0.42 0.44 16 35 H 0.27 7.25 8.29 -40.82 -0.34 6.92 16 LS Contribution 303.94 15.07 4.58 4.58 Total: -1.00 -33.53 303.94 -9.15 -42.68 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -4.49 Total: 1.93 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -2.39 Total: -5.28 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.41 Total: -35.91 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: 0.07 Total: -18.25 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: -2.89 SS G_CDS: -2.31 Total: -5.19 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.53 -9.15 -42.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818027481.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.287 kcal (2) G-P(sol) polarization free energy of solvation -33.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds