Wall clock time and date at job start Mon Mar 30 2020 01:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38581 * 120.02761 * 2 1 4 4 C 1.37982 * 120.89491 * 180.94057 * 3 2 1 5 5 C 1.39451 * 119.81633 * 0.16992 * 4 3 2 6 6 C 1.39448 * 118.65064 * 358.25404 * 5 4 3 7 7 C 1.38164 * 121.48442 * 2.31003 * 6 5 4 8 8 S 1.77794 * 117.70219 * 182.54386 * 6 5 4 9 9 C 1.81609 * 101.88805 * 295.03788 * 8 6 5 10 10 C 1.52021 * 110.21366 * 80.91183 * 9 8 6 11 11 C 1.50523 * 115.50110 * 288.86790 * 10 9 8 12 12 N 1.38977 * 119.62827 * 176.75774 * 5 4 3 13 13 C 1.34775 * 120.88255 * 75.37437 * 12 5 4 14 14 O 1.21829 * 120.00037 * 180.02562 * 13 12 5 15 15 C 1.41491 * 119.99814 * 0.04944 * 13 12 5 16 16 H 1.08001 * 120.00310 * 359.97438 * 15 13 12 17 17 C 1.40146 * 119.99698 * 180.02562 * 15 13 12 18 18 N 1.30632 * 120.00058 * 359.97438 * 17 15 13 19 19 Si 1.86806 * 119.99786 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46977 * 89.99768 * 19 17 15 21 21 H 1.48496 * 109.46866 * 209.99424 * 19 17 15 22 22 H 1.48490 * 109.47052 * 329.99654 * 19 17 15 23 23 H 1.09002 * 109.47136 * 89.99633 * 1 2 3 24 24 H 1.09003 * 109.47232 * 209.99636 * 1 2 3 25 25 H 1.09001 * 109.46994 * 329.99542 * 1 2 3 26 26 H 1.08004 * 119.55785 * 0.96754 * 3 2 1 27 27 H 1.08005 * 120.09203 * 180.19236 * 4 3 2 28 28 H 1.07996 * 120.41433 * 178.77103 * 7 6 5 29 29 H 1.09008 * 109.34582 * 320.68975 * 9 8 6 30 30 H 1.08998 * 109.34958 * 201.14756 * 9 8 6 31 31 H 1.09004 * 108.27473 * 167.30651 * 10 9 8 32 32 H 1.08997 * 108.27552 * 50.42896 * 10 9 8 33 33 H 1.09002 * 109.15258 * 187.49891 * 11 10 9 34 34 H 1.08999 * 109.14898 * 306.71744 * 11 10 9 35 35 H 0.96996 * 119.99385 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2005 1.1998 0.0000 4 6 3.5800 1.2208 -0.0194 5 6 4.2914 0.0216 -0.0430 6 6 3.5812 -1.1779 -0.0090 7 6 2.1997 -1.1986 -0.0005 8 16 4.5149 -2.6905 0.0298 9 6 5.3478 -2.6574 -1.5837 10 6 6.5770 -1.7651 -1.5222 11 6 6.3016 -0.2887 -1.4221 12 7 5.6782 0.0471 -0.1308 13 6 6.4332 0.3715 0.9374 14 8 7.6476 0.3892 0.8423 15 6 5.8153 0.6911 2.1696 16 1 4.7387 0.6754 2.2539 17 6 6.6004 1.0290 3.2802 18 7 7.9026 1.0484 3.1781 19 14 5.7847 1.4502 4.9071 20 1 5.6191 0.2136 5.7126 21 1 6.6333 2.4154 5.6510 22 1 4.4535 2.0562 4.6511 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6539 2.1312 0.0159 27 1 4.1074 2.1633 -0.0161 28 1 1.6670 -2.1380 0.0060 29 1 4.6601 -2.2733 -2.3373 30 1 5.6491 -3.6691 -1.8554 31 1 7.1728 -1.9417 -2.4177 32 1 7.1714 -2.0613 -0.6579 33 1 7.2399 0.2575 -1.5189 34 1 5.6316 0.0057 -2.2299 35 1 8.4458 1.2819 3.9469 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818027481.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:16 Heat of formation + Delta-G solvation = -28.401552 kcal Electronic energy + Delta-G solvation = -19703.918523 eV Core-core repulsion = 16791.988375 eV Total energy + Delta-G solvation = -2911.930149 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.06287 -39.18373 -36.80871 -34.70258 -34.46968 -32.09558 -31.83527 -29.28145 -27.85245 -26.42959 -23.87545 -23.22423 -22.72069 -20.83073 -19.40530 -17.76981 -17.69249 -17.39425 -16.57655 -16.10243 -15.80763 -15.48043 -15.09035 -14.87753 -14.57419 -14.46727 -14.32813 -13.99706 -13.33548 -13.18030 -13.03531 -13.01196 -12.82128 -12.74363 -12.58370 -12.30627 -12.05839 -11.93954 -11.87424 -11.06761 -10.97868 -10.11329 -9.91049 -9.59638 -9.04851 -8.52990 -8.35043 -6.95636 0.12997 0.40577 0.87038 1.32793 1.33883 1.49150 1.67787 2.18247 2.37671 2.68401 2.75248 3.59463 3.70586 3.93839 4.04245 4.07606 4.28209 4.29130 4.40135 4.47219 4.58775 4.65281 4.74992 4.82147 4.89271 4.96909 5.08274 5.17999 5.24174 5.26299 5.35862 5.55073 5.63730 5.84877 5.98693 6.19908 6.29815 6.79010 7.44135 8.40879 8.60883 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.014451 B = 0.008898 C = 0.006559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.118015 B = 3146.052018 C = 4268.122192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.097 4.097 3 C -0.094 4.094 4 C -0.134 4.134 5 C 0.181 3.819 6 C -0.121 4.121 7 C -0.072 4.072 8 S -0.206 6.206 9 C -0.071 4.071 10 C -0.131 4.131 11 C 0.123 3.877 12 N -0.603 5.603 13 C 0.556 3.444 14 O -0.627 6.627 15 C -0.552 4.552 16 H 0.073 0.927 17 C 0.035 3.965 18 N -0.802 5.802 19 Si 0.986 3.014 20 H -0.263 1.263 21 H -0.264 1.264 22 H -0.250 1.250 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.152 0.848 27 H 0.112 0.888 28 H 0.150 0.850 29 H 0.099 0.901 30 H 0.130 0.870 31 H 0.103 0.897 32 H 0.036 0.964 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.174 -3.081 -8.167 17.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.099 4.099 3 C -0.113 4.113 4 C -0.156 4.156 5 C 0.085 3.915 6 C -0.235 4.235 7 C -0.094 4.094 8 S 0.029 5.971 9 C -0.219 4.219 10 C -0.171 4.171 11 C 0.001 3.999 12 N -0.335 5.335 13 C 0.367 3.633 14 O -0.515 6.515 15 C -0.587 4.587 16 H 0.091 0.909 17 C -0.182 4.182 18 N -0.431 5.431 19 Si 0.805 3.195 20 H -0.188 1.188 21 H -0.189 1.189 22 H -0.173 1.173 23 H 0.104 0.896 24 H 0.094 0.906 25 H 0.097 0.903 26 H 0.170 0.830 27 H 0.130 0.870 28 H 0.168 0.832 29 H 0.117 0.883 30 H 0.148 0.852 31 H 0.121 0.879 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.151 -3.920 -7.355 16.423 hybrid contribution 0.535 1.155 -0.046 1.274 sum -13.615 -2.765 -7.401 15.742 Atomic orbital electron populations 1.20785 0.87777 1.03891 1.03519 1.20382 0.97985 0.91630 0.99885 1.21291 0.92421 0.99306 0.98244 1.21674 0.95303 0.97021 1.01599 1.17803 0.83875 0.92767 0.97066 1.22175 0.96838 0.94372 1.10078 1.21193 0.90555 0.99436 0.98172 1.85682 1.57775 1.24713 1.28941 1.23332 0.98945 1.04626 0.94956 1.21418 0.97868 0.95043 1.02801 1.20894 0.98478 0.95452 0.85038 1.45533 1.03208 1.73383 1.11381 1.17005 0.85670 0.77022 0.83613 1.90593 1.15618 1.60567 1.84685 1.20371 0.94725 1.48323 0.95280 0.90896 1.26909 0.94872 0.92141 1.04312 1.70164 1.06989 1.33967 1.31978 0.85194 0.79356 0.79056 0.75916 1.18809 1.18878 1.17328 0.89580 0.90580 0.90294 0.83044 0.86952 0.83201 0.88260 0.85218 0.87903 0.94549 0.92171 0.90194 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.62 10.02 71.24 0.71 -0.91 16 2 C -0.10 -2.43 5.90 -19.73 -0.12 -2.54 16 3 C -0.09 -2.63 9.66 22.29 0.22 -2.41 16 4 C -0.13 -4.99 9.06 22.50 0.20 -4.78 16 5 C 0.18 7.56 3.74 38.59 0.14 7.70 16 6 C -0.12 -4.51 5.72 22.54 0.13 -4.38 16 7 C -0.07 -2.10 9.52 22.30 0.21 -1.89 16 8 S -0.21 -7.70 21.47 -56.49 -1.21 -8.91 16 9 C -0.07 -2.10 6.14 71.66 0.44 -1.66 16 10 C -0.13 -4.57 5.35 29.47 0.16 -4.42 16 11 C 0.12 5.00 5.59 85.43 0.48 5.48 16 12 N -0.60 -29.13 2.09 -643.54 -1.35 -30.47 16 13 C 0.56 33.39 7.42 85.04 0.63 34.02 16 14 O -0.63 -42.73 14.54 -4.76 -0.07 -42.80 16 15 C -0.55 -32.61 8.52 23.54 0.20 -32.41 16 16 H 0.07 4.11 6.32 -2.91 -0.02 4.09 16 17 C 0.04 2.03 5.50 85.33 0.47 2.50 16 18 N -0.80 -49.69 11.72 21.85 0.26 -49.43 16 19 Si 0.99 42.48 29.56 68.60 2.03 44.51 16 20 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 21 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 22 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 23 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.08 1.07 8.09 -2.39 -0.02 1.05 16 25 H 0.08 1.07 8.09 -2.39 -0.02 1.05 16 26 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 27 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 28 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 29 H 0.10 2.54 8.13 -2.39 -0.02 2.52 16 30 H 0.13 3.06 8.14 -2.39 -0.02 3.04 16 31 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.04 1.59 8.11 -2.39 -0.02 1.57 16 33 H 0.06 2.69 7.49 -2.39 -0.02 2.67 16 34 H 0.08 2.70 8.00 -2.39 -0.02 2.68 16 35 H 0.28 15.45 8.29 -92.71 -0.77 14.68 16 Total: -1.00 -78.80 303.94 4.62 -74.18 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 1.09 Total: 18.63 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: 3.88 Total: -5.71 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -1.09 Total: -79.91 kcal Atomic # 8 Polarization: -42.73 SS G_CDS: -0.07 Total: -42.80 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 16 Polarization: -7.70 SS G_CDS: -1.21 Total: -8.91 kcal Total: -78.80 4.62 -74.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818027481.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.779 kcal (2) G-P(sol) polarization free energy of solvation -78.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds