Wall clock time and date at job start Mon Mar 30 2020 02:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46495 * 119.99724 * 2 1 4 4 C 1.50706 * 109.47042 * 274.74136 * 3 2 1 5 5 H 1.07992 * 120.00048 * 4.77205 * 4 3 2 6 6 C 1.37884 * 119.99871 * 184.77425 * 4 3 2 7 7 N 1.31509 * 119.99929 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99609 * 179.97438 * 6 4 3 9 9 H 1.48493 * 109.47609 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46574 * 120.00401 * 8 6 4 11 11 H 1.48505 * 109.47141 * 239.99765 * 8 6 4 12 12 S 1.65594 * 119.99909 * 180.02562 * 2 1 3 13 13 O 1.42101 * 106.40466 * 150.66310 * 12 2 1 14 14 O 1.42097 * 106.40579 * 17.74207 * 12 2 1 15 15 N 1.65604 * 107.21678 * 264.20215 * 12 2 1 16 16 N 1.40099 * 119.99763 * 64.28746 * 15 12 2 17 17 C 1.46766 * 124.34393 * 264.86019 * 16 15 12 18 18 C 1.54668 * 105.37931 * 162.85616 * 17 16 15 19 19 C 1.54628 * 101.68577 * 25.76737 * 18 17 16 20 20 C 1.34415 * 124.35446 * 85.16151 * 16 15 12 21 21 O 1.21279 * 124.94250 * 0.42700 * 20 16 15 22 22 H 1.09004 * 109.46727 * 270.00056 * 1 2 3 23 23 H 1.08996 * 109.46856 * 30.00113 * 1 2 3 24 24 H 1.09002 * 109.46801 * 150.00015 * 1 2 3 25 25 H 1.08995 * 109.47788 * 34.74035 * 3 2 1 26 26 H 1.09003 * 109.47210 * 154.74507 * 3 2 1 27 27 H 0.97007 * 119.99753 * 180.02562 * 7 6 4 28 28 H 0.97004 * 120.00246 * 244.55984 * 15 12 2 29 29 H 1.09003 * 110.24934 * 281.98184 * 17 16 15 30 30 H 1.09002 * 110.25230 * 43.98598 * 17 16 15 31 31 H 1.08997 * 111.19018 * 267.59138 * 18 17 16 32 32 H 1.08998 * 110.82081 * 143.77914 * 18 17 16 33 33 H 1.08996 * 110.48784 * 216.31007 * 19 18 17 34 34 H 1.08993 * 110.60047 * 93.71633 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3469 1.7625 -1.4160 5 1 1.8718 1.2300 -2.2265 6 6 3.0904 2.8941 -1.6767 7 7 3.6694 3.5422 -0.6897 8 14 3.2761 3.5056 -3.4319 9 1 2.5336 2.6060 -4.3509 10 1 2.7281 4.8818 -3.5371 11 1 4.7140 3.5158 -3.8030 12 16 2.2930 -1.4341 -0.0006 13 8 3.5228 -1.1872 -0.6684 14 8 1.3693 -2.4306 -0.4165 15 7 2.6765 -1.7794 1.5730 16 7 1.6590 -2.0260 2.5039 17 6 1.0922 -1.0107 3.3994 18 6 -0.2455 -1.6051 3.8988 19 6 0.0179 -3.1231 3.7679 20 6 1.0805 -3.2241 2.6958 21 8 1.3688 -4.2385 2.0969 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 1.6479 2.0056 0.5856 26 1 3.1841 1.1187 0.4385 27 1 4.1922 4.3385 -0.8731 28 1 3.6054 -1.8070 1.8510 29 1 1.7643 -0.8301 4.2384 30 1 0.9117 -0.0846 2.8536 31 1 -1.0754 -1.2969 3.2629 32 1 -0.4285 -1.3291 4.9373 33 1 -0.8886 -3.6422 3.4566 34 1 0.3859 -3.5311 4.7092 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867595015.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:28 Heat of formation + Delta-G solvation = -72.741444 kcal Electronic energy + Delta-G solvation = -20822.064142 eV Core-core repulsion = 17497.362008 eV Total energy + Delta-G solvation = -3324.702134 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.093 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.30272 -36.67007 -36.51926 -35.58367 -35.25543 -34.29159 -32.49337 -29.12226 -27.87773 -27.66782 -25.14835 -22.37826 -22.16308 -20.84657 -19.06461 -17.82317 -17.51274 -16.82749 -16.48954 -16.23719 -15.33839 -15.16804 -14.52984 -14.23191 -13.95633 -13.46827 -13.35801 -13.29113 -12.91508 -12.44247 -12.23651 -11.93449 -11.72268 -11.66160 -11.48902 -11.23646 -11.23166 -11.12107 -10.79214 -10.65016 -10.48186 -10.07610 -9.81721 -9.54094 -9.00171 -8.50214 -8.16257 -6.12364 -4.16186 0.87799 2.27951 2.54909 3.28449 3.36527 3.41970 3.78606 4.09043 4.21534 4.27119 4.41241 4.62084 4.82430 5.03551 5.23107 5.26852 5.37171 5.48176 5.57502 5.60590 5.75018 5.91673 6.07380 6.25626 6.45275 6.84047 7.04489 7.16726 7.30858 7.51393 7.85695 8.12962 8.25430 8.86707 9.49776 10.96344 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.031778 B = 0.005765 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.888954 B = 4856.059176 C = 5177.044329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.990 5.990 3 C 0.256 3.744 4 C -0.529 4.529 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 S 2.776 3.224 13 O -0.947 6.947 14 O -0.976 6.976 15 N -0.906 5.906 16 N -0.408 5.408 17 C 0.094 3.906 18 C -0.128 4.128 19 C -0.144 4.144 20 C 0.515 3.485 21 O -0.507 6.507 22 H 0.037 0.963 23 H 0.079 0.921 24 H 0.066 0.934 25 H 0.035 0.965 26 H 0.038 0.962 27 H 0.264 0.736 28 H 0.414 0.586 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.129 -6.815 12.830 16.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.834 5.834 3 C 0.134 3.866 4 C -0.569 4.569 5 H 0.080 0.920 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.207 1.207 12 S 2.781 3.219 13 O -0.929 6.929 14 O -0.959 6.959 15 N -0.752 5.752 16 N -0.238 5.238 17 C -0.029 4.029 18 C -0.167 4.167 19 C -0.186 4.186 20 C 0.301 3.699 21 O -0.379 6.379 22 H 0.056 0.944 23 H 0.098 0.902 24 H 0.085 0.915 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.250 0.750 29 H 0.097 0.903 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.127 0.873 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.732 -7.738 11.642 15.975 hybrid contribution 0.760 0.884 -0.445 1.248 sum -6.972 -6.854 11.197 14.865 Atomic orbital electron populations 1.21375 0.79924 1.03579 1.00171 1.57654 1.14422 1.23231 1.88127 1.19094 0.90890 0.78690 0.97892 1.21519 1.31866 1.10325 0.93151 0.91997 1.24932 0.94962 0.96467 0.97611 1.69917 1.33457 1.18898 1.31239 0.86437 0.78133 0.78399 0.84464 1.19608 1.20935 1.20748 1.02599 0.73859 0.73109 0.72289 1.93697 1.45249 1.85441 1.68486 1.93565 1.64661 1.58061 1.79570 1.56490 1.08497 1.88167 1.22063 1.47054 1.30963 1.10671 1.35136 1.22514 0.94630 0.92285 0.93452 1.22656 0.96778 0.93844 1.03430 1.22234 0.99115 0.98434 0.98819 1.21364 0.82780 0.82139 0.83572 1.90762 1.65407 1.31581 1.50108 0.94400 0.90193 0.91504 0.94744 0.94434 0.92682 0.74974 0.90275 0.88927 0.89188 0.88463 0.87305 0.87263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.59 10.65 59.85 0.64 2.22 16 2 N -0.99 -20.01 3.22 -123.05 -0.40 -20.40 16 3 C 0.26 6.14 5.07 -5.19 -0.03 6.11 16 4 C -0.53 -14.56 9.38 -34.43 -0.32 -14.88 16 5 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -25.57 13.29 55.43 0.74 -24.83 16 8 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 9 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 S 2.78 57.55 6.28 -107.50 -0.68 56.88 16 13 O -0.95 -23.09 17.33 -57.17 -0.99 -24.08 16 14 O -0.98 -22.01 16.62 -57.17 -0.95 -22.96 16 15 N -0.91 -15.02 6.72 60.35 0.41 -14.61 16 16 N -0.41 -5.73 3.65 -59.10 -0.22 -5.95 16 17 C 0.09 0.90 7.61 -3.02 -0.02 0.88 16 18 C -0.13 -0.82 7.19 -25.00 -0.18 -1.00 16 19 C -0.14 -1.19 6.86 -26.74 -0.18 -1.38 16 20 C 0.51 7.54 8.18 -10.86 -0.09 7.45 16 21 O -0.51 -9.86 17.95 5.56 0.10 -9.76 16 22 H 0.04 0.49 7.50 -51.93 -0.39 0.10 16 23 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 24 H 0.07 1.10 7.00 -51.93 -0.36 0.74 16 25 H 0.03 0.82 8.11 -51.93 -0.42 0.39 16 26 H 0.04 0.95 7.78 -51.93 -0.40 0.55 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.41 6.00 8.96 -176.25 -1.58 4.42 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.95 7.50 -51.93 -0.39 0.56 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 308.05 15.07 4.64 4.64 Total: -1.00 -37.26 308.05 -8.27 -45.53 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -5.62 Total: -2.12 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -0.28 Total: 1.05 kcal Atomic # 7 Polarization: -66.32 SS G_CDS: 0.53 Total: -65.80 kcal Atomic # 8 Polarization: -54.95 SS G_CDS: -1.84 Total: -56.79 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 57.55 SS G_CDS: -0.68 Total: 56.88 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -37.26 -8.27 -45.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867595015.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.211 kcal (2) G-P(sol) polarization free energy of solvation -37.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds