Wall clock time and date at job start Mon Mar 30 2020 02:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46495 * 119.99724 * 2 1 4 4 C 1.50706 * 109.47042 * 274.74136 * 3 2 1 5 5 H 1.07992 * 120.00048 * 4.77205 * 4 3 2 6 6 C 1.37884 * 119.99871 * 184.77425 * 4 3 2 7 7 N 1.31509 * 119.99929 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99609 * 179.97438 * 6 4 3 9 9 H 1.48493 * 109.47609 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46574 * 120.00401 * 8 6 4 11 11 H 1.48505 * 109.47141 * 239.99765 * 8 6 4 12 12 S 1.65594 * 119.99909 * 180.02562 * 2 1 3 13 13 O 1.42101 * 106.40466 * 150.66310 * 12 2 1 14 14 O 1.42097 * 106.40579 * 17.74207 * 12 2 1 15 15 N 1.65604 * 107.21678 * 264.20215 * 12 2 1 16 16 N 1.40099 * 119.99763 * 64.28746 * 15 12 2 17 17 C 1.46766 * 124.34393 * 264.86019 * 16 15 12 18 18 C 1.54668 * 105.37931 * 162.85616 * 17 16 15 19 19 C 1.54628 * 101.68577 * 25.76737 * 18 17 16 20 20 C 1.34415 * 124.35446 * 85.16151 * 16 15 12 21 21 O 1.21279 * 124.94250 * 0.42700 * 20 16 15 22 22 H 1.09004 * 109.46727 * 270.00056 * 1 2 3 23 23 H 1.08996 * 109.46856 * 30.00113 * 1 2 3 24 24 H 1.09002 * 109.46801 * 150.00015 * 1 2 3 25 25 H 1.08995 * 109.47788 * 34.74035 * 3 2 1 26 26 H 1.09003 * 109.47210 * 154.74507 * 3 2 1 27 27 H 0.97007 * 119.99753 * 180.02562 * 7 6 4 28 28 H 0.97004 * 120.00246 * 244.55984 * 15 12 2 29 29 H 1.09003 * 110.24934 * 281.98184 * 17 16 15 30 30 H 1.09002 * 110.25230 * 43.98598 * 17 16 15 31 31 H 1.08997 * 111.19018 * 267.59138 * 18 17 16 32 32 H 1.08998 * 110.82081 * 143.77914 * 18 17 16 33 33 H 1.08996 * 110.48784 * 216.31007 * 19 18 17 34 34 H 1.08993 * 110.60047 * 93.71633 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3469 1.7625 -1.4160 5 1 1.8718 1.2300 -2.2265 6 6 3.0904 2.8941 -1.6767 7 7 3.6694 3.5422 -0.6897 8 14 3.2761 3.5056 -3.4319 9 1 2.5336 2.6060 -4.3509 10 1 2.7281 4.8818 -3.5371 11 1 4.7140 3.5158 -3.8030 12 16 2.2930 -1.4341 -0.0006 13 8 3.5228 -1.1872 -0.6684 14 8 1.3693 -2.4306 -0.4165 15 7 2.6765 -1.7794 1.5730 16 7 1.6590 -2.0260 2.5039 17 6 1.0922 -1.0107 3.3994 18 6 -0.2455 -1.6051 3.8988 19 6 0.0179 -3.1231 3.7679 20 6 1.0805 -3.2241 2.6958 21 8 1.3688 -4.2385 2.0969 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 1.6479 2.0056 0.5856 26 1 3.1841 1.1187 0.4385 27 1 4.1922 4.3385 -0.8731 28 1 3.6054 -1.8070 1.8510 29 1 1.7643 -0.8301 4.2384 30 1 0.9117 -0.0846 2.8536 31 1 -1.0754 -1.2969 3.2629 32 1 -0.4285 -1.3291 4.9373 33 1 -0.8886 -3.6422 3.4566 34 1 0.3859 -3.5311 4.7092 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867595015.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:28 Heat of formation + Delta-G solvation = -103.383896 kcal Electronic energy + Delta-G solvation = -20823.392898 eV Core-core repulsion = 17497.362008 eV Total energy + Delta-G solvation = -3326.030890 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.093 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.32792 -38.43119 -37.70130 -37.28204 -37.02832 -35.34551 -34.53018 -30.14392 -29.69551 -28.51128 -26.84126 -24.27721 -22.86496 -21.99535 -20.51144 -19.22895 -18.94774 -18.48206 -18.30612 -17.32722 -17.05645 -16.34711 -16.15787 -15.50172 -15.12577 -15.11630 -14.67522 -14.26334 -14.08813 -13.99716 -13.59325 -13.45462 -13.38417 -13.29123 -13.05430 -12.98534 -12.55423 -12.46131 -12.37992 -12.08320 -11.84165 -11.75754 -11.75156 -10.71315 -10.60616 -10.13285 -9.83085 -8.22722 -6.33360 -0.69744 1.05913 1.37677 1.41090 1.46571 1.51973 2.25939 2.41511 2.61921 3.09406 3.40258 3.41086 3.65532 4.04097 4.09131 4.22655 4.56236 4.66089 4.73464 4.76211 4.91506 4.99200 5.03171 5.16131 5.17694 5.28145 5.38281 5.65909 5.78971 5.89385 6.05599 6.09213 6.74320 7.13427 7.35718 8.84992 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.031778 B = 0.005765 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.888954 B = 4856.059176 C = 5177.044329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.991 5.991 3 C 0.272 3.728 4 C -0.550 4.550 5 H 0.050 0.950 6 C 0.016 3.984 7 N -0.921 5.921 8 Si 0.953 3.047 9 H -0.273 1.273 10 H -0.267 1.267 11 H -0.281 1.281 12 S 2.793 3.207 13 O -0.993 6.993 14 O -0.998 6.998 15 N -0.908 5.908 16 N -0.411 5.411 17 C 0.081 3.919 18 C -0.113 4.113 19 C -0.131 4.131 20 C 0.496 3.504 21 O -0.568 6.568 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.065 0.935 25 H 0.040 0.960 26 H 0.019 0.981 27 H 0.268 0.732 28 H 0.423 0.577 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.139 0.861 33 H 0.122 0.878 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.796 -6.191 14.639 18.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.835 5.835 3 C 0.148 3.852 4 C -0.590 4.590 5 H 0.068 0.932 6 C -0.184 4.184 7 N -0.561 5.561 8 Si 0.778 3.222 9 H -0.197 1.197 10 H -0.192 1.192 11 H -0.207 1.207 12 S 2.799 3.201 13 O -0.976 6.976 14 O -0.981 6.981 15 N -0.757 5.757 16 N -0.241 5.241 17 C -0.040 4.040 18 C -0.152 4.152 19 C -0.173 4.173 20 C 0.286 3.714 21 O -0.445 6.445 22 H 0.098 0.902 23 H 0.098 0.902 24 H 0.083 0.917 25 H 0.058 0.942 26 H 0.037 0.963 27 H 0.077 0.923 28 H 0.262 0.738 29 H 0.121 0.879 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.157 0.843 33 H 0.140 0.860 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.422 -7.082 13.471 17.899 hybrid contribution 1.250 0.650 -0.921 1.683 sum -8.171 -6.431 12.550 16.299 Atomic orbital electron populations 1.21633 0.77641 1.03465 1.02920 1.57445 1.15863 1.21540 1.88615 1.18712 0.90507 0.79936 0.96003 1.21859 1.31980 1.10579 0.94566 0.93157 1.25672 0.94763 0.96753 1.01231 1.69985 1.33942 1.19352 1.32834 0.85583 0.77951 0.78488 0.80137 1.19710 1.19245 1.20709 1.01801 0.72663 0.72852 0.72797 1.93624 1.47155 1.85987 1.70796 1.93531 1.65134 1.58735 1.80682 1.55847 1.09892 1.87783 1.22180 1.47703 1.30039 1.12136 1.34231 1.22963 0.96811 0.91116 0.93154 1.22784 0.94779 0.91639 1.05966 1.22378 0.97136 1.00342 0.97423 1.22738 0.83398 0.81250 0.84043 1.90724 1.67361 1.33717 1.52676 0.90217 0.90237 0.91665 0.94185 0.96344 0.92306 0.73823 0.87919 0.89572 0.88454 0.84274 0.86003 0.84265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.81 10.65 127.77 1.36 4.17 16 2 N -0.99 -39.93 3.22 -543.21 -1.75 -41.68 16 3 C 0.27 13.10 5.07 85.64 0.43 13.53 16 4 C -0.55 -30.56 9.38 25.60 0.24 -30.32 16 5 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 6 C 0.02 0.87 5.46 84.66 0.46 1.33 16 7 N -0.92 -52.57 13.29 21.45 0.28 -52.29 16 8 Si 0.95 44.24 29.54 68.60 2.03 46.26 16 9 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 10 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 S 2.79 118.11 6.28 -56.49 -0.35 117.75 16 13 O -0.99 -50.30 17.33 -128.00 -2.22 -52.52 16 14 O -1.00 -45.85 16.62 -128.00 -2.13 -47.98 16 15 N -0.91 -30.23 6.72 37.02 0.25 -29.98 16 16 N -0.41 -10.96 3.65 -459.47 -1.68 -12.64 16 17 C 0.08 1.28 7.61 86.90 0.66 1.94 16 18 C -0.11 -0.90 7.19 31.72 0.23 -0.67 16 19 C -0.13 -1.68 6.86 30.59 0.21 -1.47 16 20 C 0.50 13.90 8.18 87.90 0.72 14.62 16 21 O -0.57 -22.37 17.95 -3.03 -0.05 -22.43 16 22 H 0.08 1.84 7.50 -2.39 -0.02 1.82 16 23 H 0.08 2.53 8.07 -2.39 -0.02 2.51 16 24 H 0.06 2.10 7.00 -2.39 -0.02 2.08 16 25 H 0.04 1.88 8.11 -2.39 -0.02 1.86 16 26 H 0.02 0.96 7.78 -2.39 -0.02 0.94 16 27 H 0.27 14.36 8.31 -92.70 -0.77 13.59 16 28 H 0.42 12.54 8.96 -217.35 -1.95 10.59 16 29 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 1.51 7.50 -2.39 -0.02 1.50 16 31 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.14 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -83.42 308.05 -2.14 -85.56 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -0.83 Total: 6.80 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 4.31 Total: 3.12 kcal Atomic # 7 Polarization: -133.68 SS G_CDS: -2.89 Total: -136.58 kcal Atomic # 8 Polarization: -118.52 SS G_CDS: -4.40 Total: -122.92 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 118.11 SS G_CDS: -0.35 Total: 117.75 kcal Total: -83.42 -2.14 -85.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867595015.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.828 kcal (2) G-P(sol) polarization free energy of solvation -83.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds