Wall clock time and date at job start Mon Mar 30 2020 02:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.08999 * 109.47327 * 333.57493 * 3 2 1 5 5 N 1.46496 * 109.47214 * 93.57778 * 3 2 1 6 6 C 1.34781 * 119.99790 * 274.99973 * 5 3 2 7 7 O 1.21752 * 120.00196 * 359.72571 * 6 5 3 8 8 C 1.46239 * 119.99658 * 179.72292 * 6 5 3 9 9 S 1.75666 * 125.23056 * 0.02562 * 8 6 5 10 10 C 1.75472 * 92.09447 * 179.97438 * 9 8 6 11 11 C 1.32768 * 111.36080 * 0.02562 * 10 9 8 12 12 C 1.39553 * 125.22475 * 179.72008 * 8 6 5 13 13 C 1.40536 * 123.71467 * 0.02562 * 12 8 6 14 14 H 1.07998 * 120.00186 * 23.43868 * 13 12 8 15 15 C 1.40304 * 119.99490 * 203.43787 * 13 12 8 16 16 N 1.30641 * 120.00478 * 9.79531 * 15 13 12 17 17 Si 1.86806 * 119.99891 * 189.78910 * 15 13 12 18 18 H 1.48503 * 109.46656 * 60.00024 * 17 15 13 19 19 H 1.48498 * 109.47217 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47054 * 300.00749 * 17 15 13 21 21 C 1.53003 * 109.47034 * 213.57597 * 3 2 1 22 22 C 1.52997 * 109.46845 * 60.00088 * 21 3 2 23 23 C 1.52997 * 109.47046 * 180.02562 * 21 3 2 24 24 H 4.18741 * 15.04033 * 359.97438 * 4 2 1 25 25 H 0.96998 * 119.99963 * 94.71897 * 5 3 2 26 26 H 1.07997 * 124.32488 * 180.02562 * 10 9 8 27 27 H 1.08000 * 122.78507 * 180.02562 * 11 10 9 28 28 H 0.96998 * 120.00203 * 179.97438 * 16 15 13 29 29 H 1.08999 * 109.46978 * 300.00108 * 21 3 2 30 30 H 1.08999 * 109.47315 * 60.00227 * 22 21 3 31 31 H 1.09002 * 109.46938 * 179.97438 * 22 21 3 32 32 H 1.09004 * 109.47770 * 299.99752 * 22 21 3 33 33 H 1.09002 * 109.47080 * 180.02562 * 23 21 3 34 34 H 1.08999 * 109.47098 * 299.99763 * 23 21 3 35 35 H 1.08999 * 109.47650 * 59.99750 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -0.9194 0.4573 5 7 3.1343 0.0871 -1.3785 6 6 3.2635 -1.0317 -2.1190 7 8 2.9792 -2.1146 -1.6406 8 6 3.7452 -0.9447 -3.4970 9 16 4.1936 0.5399 -4.3220 10 6 4.6017 -0.3250 -5.7932 11 6 4.4084 -1.6313 -5.6557 12 6 3.9250 -2.0292 -4.3568 13 6 3.6600 -3.3617 -3.9975 14 1 2.9672 -3.5779 -3.1978 15 6 4.2956 -4.4113 -4.6780 16 7 5.2704 -4.1554 -5.5092 17 14 3.7479 -6.1748 -4.3953 18 1 2.3186 -6.3157 -4.7730 19 1 4.5725 -7.0884 -5.2263 20 1 3.9174 -6.5219 -2.9615 21 6 3.1554 1.2027 0.7978 22 6 2.6455 1.1125 2.2374 23 6 4.6854 1.2038 0.7972 24 1 -1.0500 -0.0007 0.0009 25 1 3.3607 0.9498 -1.7596 26 1 4.9639 0.1452 -6.6955 27 1 4.6020 -2.3379 -6.4492 28 1 5.7100 -4.8811 -5.9793 29 1 2.7917 2.1228 0.3405 30 1 3.0092 0.1923 2.6948 31 1 3.0088 1.9686 2.8059 32 1 1.5554 1.1120 2.2375 33 1 5.0483 2.0599 1.3660 34 1 5.0495 0.2837 1.2543 35 1 5.0484 1.2682 -0.2285 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868021486.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:16 Heat of formation + Delta-G solvation = 5.956658 kcal Electronic energy + Delta-G solvation = -18777.252751 eV Core-core repulsion = 15866.812486 eV Total energy + Delta-G solvation = -2910.440265 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.52074 -38.38737 -37.42835 -34.92425 -34.06639 -33.39890 -30.87308 -28.73095 -28.02532 -26.81103 -23.94044 -22.03387 -21.61929 -20.62338 -19.65153 -18.91405 -17.74849 -17.34354 -16.73472 -16.14073 -16.10314 -15.41914 -15.31183 -14.74570 -14.22724 -14.18683 -13.96706 -13.77066 -13.50510 -13.18754 -13.02024 -12.91554 -12.77967 -12.43511 -12.08189 -12.06052 -12.01139 -11.83527 -11.52163 -11.43181 -11.09052 -11.01512 -10.37488 -10.14769 -9.37577 -8.95197 -8.87204 -6.47032 0.29699 1.32262 1.34864 1.35900 1.44179 1.65017 1.77970 1.87616 1.97168 2.15847 2.51969 2.77126 3.28169 3.44418 3.85658 3.95507 4.23822 4.36056 4.47994 4.63126 4.78989 4.83665 4.96233 4.98012 5.02418 5.10545 5.15116 5.26640 5.35628 5.38474 5.39884 5.55842 5.68433 5.82756 6.38014 6.55731 6.67132 6.70108 6.93798 7.70803 8.06143 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.017739 B = 0.005798 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.023287 B = 4828.255535 C = 5719.112771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.225 4.225 3 C 0.257 3.743 4 H 0.077 0.923 5 N -0.725 5.725 6 C 0.594 3.406 7 O -0.601 6.601 8 C -0.468 4.468 9 S 0.009 5.991 10 C -0.190 4.190 11 C -0.129 4.129 12 C 0.113 3.887 13 C -0.417 4.417 14 H 0.082 0.918 15 C 0.037 3.963 16 N -0.791 5.791 17 Si 0.988 3.012 18 H -0.257 1.257 19 H -0.248 1.248 20 H -0.271 1.271 21 C -0.087 4.087 22 C -0.139 4.139 23 C -0.145 4.145 24 H 0.249 0.751 25 H 0.400 0.600 26 H 0.178 0.822 27 H 0.142 0.858 28 H 0.302 0.698 29 H 0.086 0.914 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.049 0.951 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.945 8.296 6.015 10.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.226 4.226 3 C 0.153 3.847 4 H 0.094 0.906 5 N -0.376 5.376 6 C 0.391 3.609 7 O -0.487 6.487 8 C -0.587 4.587 9 S 0.265 5.735 10 C -0.324 4.324 11 C -0.161 4.161 12 C 0.101 3.899 13 C -0.448 4.448 14 H 0.100 0.900 15 C -0.183 4.183 16 N -0.416 5.416 17 Si 0.807 3.193 18 H -0.182 1.182 19 H -0.171 1.171 20 H -0.196 1.196 21 C -0.105 4.105 22 C -0.197 4.197 23 C -0.202 4.202 24 H 0.266 0.734 25 H 0.236 0.764 26 H 0.195 0.805 27 H 0.159 0.841 28 H 0.113 0.887 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.886 8.970 6.592 11.290 hybrid contribution -0.213 -2.002 -0.709 2.135 sum -2.098 6.967 5.883 9.357 Atomic orbital electron populations 1.25714 0.96715 1.00242 0.98306 1.24031 0.95650 1.01034 1.01885 1.17884 0.83324 1.00551 0.82980 0.90560 1.45688 1.69542 1.09036 1.13384 1.17059 0.76201 0.83207 0.84443 1.90617 1.55191 1.29402 1.73513 1.23022 1.40166 0.96631 0.98834 1.82288 1.73169 1.10448 1.07640 1.25455 1.07904 0.97249 1.01835 1.21616 1.01591 0.95150 0.97781 1.18384 0.87992 0.93285 0.90193 1.19988 1.19959 0.90784 1.14055 0.89976 1.27023 0.92946 1.06305 0.92053 1.69637 1.15365 1.37752 1.18817 0.85164 0.79947 0.74697 0.79449 1.18159 1.17141 1.19561 1.21304 0.96862 0.95718 0.96663 1.21768 1.01144 1.02983 0.93761 1.21826 0.93557 1.02721 1.02092 0.73429 0.76403 0.80503 0.84081 0.88698 0.89604 0.92685 0.89752 0.92659 0.89606 0.93210 0.93404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.75 19.25 74.32 1.43 -4.32 16 2 C -0.22 -7.85 11.57 31.13 0.36 -7.49 16 3 C 0.26 9.01 2.02 43.19 0.09 9.10 16 4 H 0.08 3.06 7.57 -2.39 -0.02 3.04 16 5 N -0.73 -29.25 4.34 -455.59 -1.98 -31.23 16 6 C 0.59 30.61 7.71 86.32 0.67 31.28 16 7 O -0.60 -35.34 14.11 -4.51 -0.06 -35.40 16 8 C -0.47 -24.42 6.51 24.67 0.16 -24.26 16 9 S 0.01 0.37 22.25 -56.49 -1.26 -0.88 16 10 C -0.19 -7.97 11.07 66.64 0.74 -7.23 16 11 C -0.13 -6.33 9.04 22.61 0.20 -6.13 16 12 C 0.11 6.26 5.67 -20.89 -0.12 6.14 16 13 C -0.42 -23.81 8.52 23.33 0.20 -23.61 16 14 H 0.08 5.04 6.04 -2.91 -0.02 5.03 16 15 C 0.04 1.85 5.39 85.37 0.46 2.31 16 16 N -0.79 -38.63 10.82 21.89 0.24 -38.39 16 17 Si 0.99 38.92 29.57 68.60 2.03 40.94 16 18 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 19 H -0.25 -8.59 7.11 99.48 0.71 -7.88 16 20 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 21 C -0.09 -2.15 2.53 -10.79 -0.03 -2.18 16 22 C -0.14 -2.84 8.94 71.98 0.64 -2.20 16 23 C -0.14 -3.42 9.04 71.98 0.65 -2.77 16 24 H 0.25 5.07 7.80 -4.42 -0.03 5.03 16 25 H 0.40 14.44 7.48 -92.71 -0.69 13.74 16 26 H 0.18 5.88 8.06 -2.91 -0.02 5.85 16 27 H 0.14 6.90 6.41 -2.91 -0.02 6.88 16 28 H 0.30 12.94 8.29 -92.71 -0.77 12.17 16 29 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.05 1.17 7.23 -2.39 -0.02 1.15 16 33 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.05 1.27 7.45 -2.39 -0.02 1.25 16 Total: -1.00 -67.46 316.69 4.84 -62.63 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: 0.41 Total: 33.70 kcal Atomic # 6 Polarization: -36.81 SS G_CDS: 5.45 Total: -31.36 kcal Atomic # 7 Polarization: -67.88 SS G_CDS: -1.74 Total: -69.62 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -0.06 Total: -35.40 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.94 kcal Atomic # 16 Polarization: 0.37 SS G_CDS: -1.26 Total: -0.88 kcal Total: -67.46 4.84 -62.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868021486.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.583 kcal (2) G-P(sol) polarization free energy of solvation -67.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds