Wall clock time and date at job start Mon Mar 30 2020 02:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47538 * 354.99352 * 3 2 1 5 5 C 1.36885 * 119.99578 * 261.99921 * 4 3 2 6 6 H 1.08004 * 119.99949 * 198.26160 * 5 4 3 7 7 C 1.39007 * 120.00465 * 18.26265 * 5 4 3 8 8 N 1.31391 * 119.99930 * 20.39531 * 7 5 4 9 9 Si 1.86799 * 120.00077 * 200.39727 * 7 5 4 10 10 H 1.48502 * 109.47378 * 59.99676 * 9 7 5 11 11 H 1.48498 * 109.47300 * 179.97438 * 9 7 5 12 12 H 1.48510 * 109.47200 * 300.00059 * 9 7 5 13 13 C 1.34773 * 120.00150 * 81.99217 * 4 3 2 14 14 O 1.21748 * 119.99770 * 181.65721 * 13 4 3 15 15 C 1.46451 * 119.99931 * 1.65768 * 13 4 3 16 16 C 1.36769 * 125.46133 * 172.49654 * 15 13 4 17 17 C 1.37446 * 113.27711 * 179.79505 * 16 15 13 18 18 C 1.33852 * 115.11014 * 0.45463 * 17 16 15 19 19 C 1.50694 * 124.51646 * 179.82714 * 18 17 16 20 20 C 1.53000 * 109.47143 * 89.72080 * 19 18 17 21 21 C 1.52999 * 109.47123 * 180.02562 * 20 19 18 22 22 S 1.70619 * 110.96620 * 359.55576 * 18 17 16 23 23 H 4.40645 * 5.51350 * 179.97438 * 4 1 2 24 24 H 1.09004 * 109.47438 * 234.99017 * 3 2 1 25 25 H 1.09006 * 109.46949 * 114.99734 * 3 2 1 26 26 H 0.97004 * 120.00299 * 180.02562 * 8 7 5 27 27 H 1.07998 * 123.36597 * 0.03567 * 16 15 13 28 28 H 1.07999 * 122.44712 * 180.27916 * 17 16 15 29 29 H 1.08999 * 109.47379 * 209.71972 * 19 18 17 30 30 H 1.08998 * 109.47489 * 329.71987 * 19 18 17 31 31 H 1.09001 * 109.47328 * 299.99894 * 20 19 18 32 32 H 1.08997 * 109.47496 * 59.99795 * 20 19 18 33 33 H 1.09007 * 109.47263 * 299.99516 * 21 20 19 34 34 H 1.08998 * 109.47565 * 59.99873 * 21 20 19 35 35 H 1.09004 * 109.47170 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3750 0.1205 5 6 3.5190 -1.8603 1.3415 6 1 4.1426 -2.7401 1.4012 7 6 3.1063 -1.2209 2.5048 8 7 2.0592 -0.4275 2.4822 9 14 4.0404 -1.4895 4.1000 10 1 5.4485 -1.0499 3.9292 11 1 3.4041 -0.7003 5.1851 12 1 4.0115 -2.9316 4.4537 13 6 3.2068 -2.1627 -0.9707 14 8 3.5846 -3.3153 -0.8655 15 6 2.8303 -1.6323 -2.2828 16 6 2.9953 -2.2783 -3.4769 17 6 2.5497 -1.5504 -4.5543 18 6 2.0461 -0.3464 -4.2573 19 6 1.5026 0.6260 -5.2722 20 6 0.0088 0.3667 -5.4779 21 6 -0.5429 1.3535 -6.5088 22 16 2.0946 -0.0623 -2.5756 23 1 -1.0498 -0.0004 0.0002 24 1 3.0091 0.5904 0.8417 25 1 3.0091 0.4351 -0.9315 26 1 1.7714 0.0191 3.2938 27 1 3.4287 -3.2636 -3.5643 28 1 2.6047 -1.9216 -5.5670 29 1 1.6484 1.6449 -4.9136 30 1 2.0277 0.4951 -6.2183 31 1 -0.1371 -0.6523 -5.8365 32 1 -0.5164 0.4975 -4.5318 33 1 -0.3970 2.3726 -6.1506 34 1 -0.0177 1.2222 -7.4548 35 1 -1.6072 1.1690 -6.6551 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868039987.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:21 Heat of formation + Delta-G solvation = 56.746968 kcal Electronic energy + Delta-G solvation = -18926.857748 eV Core-core repulsion = 16018.619917 eV Total energy + Delta-G solvation = -2908.237832 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.79472 -37.51976 -35.27548 -34.56209 -32.39803 -31.34000 -29.92695 -27.10528 -26.38785 -24.66095 -23.13116 -21.34993 -20.72107 -18.16552 -17.80210 -17.39183 -16.70761 -15.44540 -15.20923 -14.78560 -14.38871 -14.30773 -13.94683 -13.61744 -13.10616 -12.99835 -12.58596 -12.43599 -12.28032 -12.02709 -11.65711 -11.38643 -11.28519 -11.13721 -11.04728 -10.72556 -10.65444 -10.44176 -9.81225 -9.49350 -9.48094 -9.12654 -8.62402 -8.11495 -7.97646 -7.70212 -6.49215 -3.96104 1.18210 2.13687 2.56234 2.97899 3.17194 3.18746 3.22011 3.64304 3.92677 4.08892 4.23519 4.83422 4.86666 4.96818 4.98122 5.06040 5.30033 5.43364 5.52928 5.67785 5.71874 5.76204 5.87046 5.93704 6.05226 6.13345 6.20458 6.26759 6.55821 6.57881 6.77525 6.89390 6.97802 7.41917 7.92549 8.29001 8.69009 8.99094 9.17591 9.77879 10.51396 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.029350 B = 0.005360 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.789732 B = 5223.083515 C = 5910.628199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.123 4.123 3 C 0.219 3.781 4 N -0.425 5.425 5 C -0.308 4.308 6 H 0.109 0.891 7 C 0.032 3.968 8 N -0.855 5.855 9 Si 0.928 3.072 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.507 3.493 14 O -0.576 6.576 15 C -0.222 4.222 16 C -0.096 4.096 17 C -0.145 4.145 18 C -0.262 4.262 19 C -0.042 4.042 20 C -0.121 4.121 21 C -0.151 4.151 22 S 0.226 5.774 23 H 0.203 0.797 24 H 0.126 0.874 25 H 0.069 0.931 26 H 0.273 0.727 27 H 0.142 0.858 28 H 0.126 0.874 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.084 7.029 -11.220 13.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.126 4.126 3 C 0.094 3.906 4 N -0.141 5.141 5 C -0.436 4.436 6 H 0.127 0.873 7 C -0.174 4.174 8 N -0.492 5.492 9 Si 0.754 3.246 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.196 1.196 13 C 0.296 3.704 14 O -0.462 6.462 15 C -0.343 4.343 16 C -0.129 4.129 17 C -0.176 4.176 18 C -0.381 4.381 19 C -0.081 4.081 20 C -0.159 4.159 21 C -0.209 4.209 22 S 0.496 5.504 23 H 0.220 0.780 24 H 0.143 0.857 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.160 0.840 28 H 0.144 0.856 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.413 7.786 -10.124 13.220 hybrid contribution 0.404 -1.295 -0.129 1.363 sum -3.009 6.491 -10.253 12.502 Atomic orbital electron populations 1.24261 0.95290 1.00731 1.05241 1.22747 0.94087 0.99628 0.96150 1.18552 0.85159 0.86295 1.00607 1.43611 1.54134 1.09090 1.07285 1.19727 1.29046 1.14007 0.80810 0.87309 1.25398 0.95223 0.97042 0.99719 1.70052 1.19986 1.29301 1.29834 0.85964 0.79657 0.78894 0.80115 1.19617 1.20805 1.19594 1.16804 0.85328 0.85760 0.82490 1.90658 1.53080 1.17041 1.85372 1.25000 1.10926 0.99560 0.98844 1.20506 1.01301 1.00982 0.90095 1.19732 1.03844 0.94416 0.99610 1.24812 1.08618 1.00926 1.03702 1.20055 0.95315 0.96452 0.96251 1.21561 0.94888 0.99752 0.99682 1.21782 1.00684 0.99410 0.98987 1.83972 1.56003 1.15181 0.95197 0.78025 0.85664 0.91424 0.91628 0.84036 0.85628 0.91328 0.90966 0.91792 0.91648 0.92729 0.92841 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.74 19.25 29.55 0.57 -4.17 16 2 C -0.12 -2.70 9.02 -37.12 -0.33 -3.03 16 3 C 0.22 4.89 4.73 -6.83 -0.03 4.85 16 4 N -0.42 -10.96 2.61 -119.50 -0.31 -11.27 16 5 C -0.31 -8.39 9.31 -15.01 -0.14 -8.53 16 6 H 0.11 3.09 7.40 -52.48 -0.39 2.70 16 7 C 0.03 0.81 4.88 -17.46 -0.09 0.72 16 8 N -0.85 -21.68 9.55 55.50 0.53 -21.15 16 9 Si 0.93 19.81 29.60 -169.99 -5.03 14.78 16 10 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 11 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 12 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 13 C 0.51 13.16 7.50 -12.96 -0.10 13.06 16 14 O -0.58 -16.73 16.51 5.15 0.08 -16.64 16 15 C -0.22 -4.79 6.22 -36.81 -0.23 -5.02 16 16 C -0.10 -1.85 10.02 -40.40 -0.40 -2.25 16 17 C -0.15 -2.33 9.99 -41.41 -0.41 -2.75 16 18 C -0.26 -4.03 5.53 -35.85 -0.20 -4.22 16 19 C -0.04 -0.50 5.64 -27.89 -0.16 -0.65 16 20 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 21 C -0.15 -1.32 9.91 37.16 0.37 -0.95 16 22 S 0.23 3.97 16.10 -107.50 -1.73 2.24 16 23 H 0.20 3.27 7.80 -54.10 -0.42 2.84 16 24 H 0.13 2.87 6.31 -51.93 -0.33 2.55 16 25 H 0.07 1.35 4.53 -22.49 -0.10 1.25 16 26 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 27 H 0.14 2.67 8.06 -52.49 -0.42 2.24 16 28 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 311.08 15.07 4.69 4.69 Total: -1.00 -30.32 311.08 -7.26 -37.59 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -4.18 Total: 4.21 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -1.31 Total: -14.43 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: 0.22 Total: -32.43 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: 0.08 Total: -16.64 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.03 Total: 14.78 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -1.73 Total: 2.24 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.32 -7.26 -37.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868039987.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.333 kcal (2) G-P(sol) polarization free energy of solvation -30.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds