Wall clock time and date at job start Mon Mar 30 2020 02:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47538 * 354.99352 * 3 2 1 5 5 C 1.36885 * 119.99578 * 261.99921 * 4 3 2 6 6 H 1.08004 * 119.99949 * 198.26160 * 5 4 3 7 7 C 1.39007 * 120.00465 * 18.26265 * 5 4 3 8 8 N 1.31391 * 119.99930 * 20.39531 * 7 5 4 9 9 Si 1.86799 * 120.00077 * 200.39727 * 7 5 4 10 10 H 1.48502 * 109.47378 * 59.99676 * 9 7 5 11 11 H 1.48498 * 109.47300 * 179.97438 * 9 7 5 12 12 H 1.48510 * 109.47200 * 300.00059 * 9 7 5 13 13 C 1.34773 * 120.00150 * 81.99217 * 4 3 2 14 14 O 1.21748 * 119.99770 * 181.65721 * 13 4 3 15 15 C 1.46451 * 119.99931 * 1.65768 * 13 4 3 16 16 C 1.36769 * 125.46133 * 172.49654 * 15 13 4 17 17 C 1.37446 * 113.27711 * 179.79505 * 16 15 13 18 18 C 1.33852 * 115.11014 * 0.45463 * 17 16 15 19 19 C 1.50694 * 124.51646 * 179.82714 * 18 17 16 20 20 C 1.53000 * 109.47143 * 89.72080 * 19 18 17 21 21 C 1.52999 * 109.47123 * 180.02562 * 20 19 18 22 22 S 1.70619 * 110.96620 * 359.55576 * 18 17 16 23 23 H 4.40645 * 5.51350 * 179.97438 * 4 1 2 24 24 H 1.09004 * 109.47438 * 234.99017 * 3 2 1 25 25 H 1.09006 * 109.46949 * 114.99734 * 3 2 1 26 26 H 0.97004 * 120.00299 * 180.02562 * 8 7 5 27 27 H 1.07998 * 123.36597 * 0.03567 * 16 15 13 28 28 H 1.07999 * 122.44712 * 180.27916 * 17 16 15 29 29 H 1.08999 * 109.47379 * 209.71972 * 19 18 17 30 30 H 1.08998 * 109.47489 * 329.71987 * 19 18 17 31 31 H 1.09001 * 109.47328 * 299.99894 * 20 19 18 32 32 H 1.08997 * 109.47496 * 59.99795 * 20 19 18 33 33 H 1.09007 * 109.47263 * 299.99516 * 21 20 19 34 34 H 1.08998 * 109.47565 * 59.99873 * 21 20 19 35 35 H 1.09004 * 109.47170 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3750 0.1205 5 6 3.5190 -1.8603 1.3415 6 1 4.1426 -2.7401 1.4012 7 6 3.1063 -1.2209 2.5048 8 7 2.0592 -0.4275 2.4822 9 14 4.0404 -1.4895 4.1000 10 1 5.4485 -1.0499 3.9292 11 1 3.4041 -0.7003 5.1851 12 1 4.0115 -2.9316 4.4537 13 6 3.2068 -2.1627 -0.9707 14 8 3.5846 -3.3153 -0.8655 15 6 2.8303 -1.6323 -2.2828 16 6 2.9953 -2.2783 -3.4769 17 6 2.5497 -1.5504 -4.5543 18 6 2.0461 -0.3464 -4.2573 19 6 1.5026 0.6260 -5.2722 20 6 0.0088 0.3667 -5.4779 21 6 -0.5429 1.3535 -6.5088 22 16 2.0946 -0.0623 -2.5756 23 1 -1.0498 -0.0004 0.0002 24 1 3.0091 0.5904 0.8417 25 1 3.0091 0.4351 -0.9315 26 1 1.7714 0.0191 3.2938 27 1 3.4287 -3.2636 -3.5643 28 1 2.6047 -1.9216 -5.5670 29 1 1.6484 1.6449 -4.9136 30 1 2.0277 0.4951 -6.2183 31 1 -0.1371 -0.6523 -5.8365 32 1 -0.5164 0.4975 -4.5318 33 1 -0.3970 2.3726 -6.1506 34 1 -0.0177 1.2222 -7.4548 35 1 -1.6072 1.1690 -6.6551 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868039987.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:20 Heat of formation + Delta-G solvation = 40.097389 kcal Electronic energy + Delta-G solvation = -18927.579728 eV Core-core repulsion = 16018.619917 eV Total energy + Delta-G solvation = -2908.959812 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.65549 -38.90759 -37.12694 -35.66203 -34.23623 -33.14843 -31.16827 -28.71512 -27.96103 -26.32093 -24.46156 -22.40832 -22.23890 -19.88371 -19.41013 -19.06696 -18.46503 -17.04012 -16.75781 -16.16426 -16.08922 -15.74563 -15.49718 -14.75587 -14.65010 -14.43651 -14.26991 -13.89915 -13.62479 -13.40167 -13.20189 -12.84542 -12.62369 -12.58886 -12.26036 -12.15404 -12.01080 -11.60527 -11.32139 -11.22015 -11.12659 -10.88595 -10.58803 -10.00506 -9.46422 -9.18364 -8.42337 -6.00953 -0.30285 0.65611 1.15369 1.37292 1.42082 1.52140 1.58982 1.95045 2.24275 2.33843 2.40339 3.00783 3.10356 3.68933 3.82865 4.01182 4.13532 4.23295 4.40369 4.45883 4.56322 4.70184 4.79315 4.81444 4.89574 5.02419 5.14594 5.25410 5.30019 5.32849 5.37107 5.39699 5.49333 5.61030 5.96741 6.33710 7.00772 7.05617 7.23658 7.83142 8.56767 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.029350 B = 0.005360 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.789732 B = 5223.083515 C = 5910.628199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.163 4.163 3 C 0.222 3.778 4 N -0.436 5.436 5 C -0.356 4.356 6 H 0.079 0.921 7 C 0.007 3.993 8 N -0.864 5.864 9 Si 0.992 3.008 10 H -0.264 1.264 11 H -0.267 1.267 12 H -0.278 1.278 13 C 0.493 3.507 14 O -0.629 6.629 15 C -0.280 4.280 16 C -0.082 4.082 17 C -0.155 4.155 18 C -0.231 4.231 19 C -0.044 4.044 20 C -0.120 4.120 21 C -0.147 4.147 22 S 0.248 5.752 23 H 0.239 0.761 24 H 0.112 0.888 25 H 0.090 0.910 26 H 0.279 0.721 27 H 0.135 0.865 28 H 0.161 0.839 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.456 9.052 -12.974 16.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.166 4.166 3 C 0.098 3.902 4 N -0.151 5.151 5 C -0.483 4.483 6 H 0.097 0.903 7 C -0.198 4.198 8 N -0.500 5.500 9 Si 0.815 3.185 10 H -0.189 1.189 11 H -0.191 1.191 12 H -0.204 1.204 13 C 0.285 3.715 14 O -0.519 6.519 15 C -0.400 4.400 16 C -0.117 4.117 17 C -0.184 4.184 18 C -0.350 4.350 19 C -0.083 4.083 20 C -0.158 4.158 21 C -0.205 4.205 22 S 0.519 5.481 23 H 0.256 0.744 24 H 0.130 0.870 25 H 0.107 0.893 26 H 0.089 0.911 27 H 0.153 0.847 28 H 0.178 0.822 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.806 9.861 -11.869 16.162 hybrid contribution 0.731 -1.883 0.235 2.033 sum -4.074 7.979 -11.634 14.684 Atomic orbital electron populations 1.25150 0.96194 0.98727 1.03407 1.22870 0.94455 1.01421 0.97884 1.18558 0.85947 0.84404 1.01264 1.43765 1.54165 1.10342 1.06861 1.19644 1.31130 1.14918 0.82611 0.90273 1.26105 0.95505 0.96215 1.01936 1.70124 1.20070 1.28977 1.30805 0.85030 0.78739 0.78364 0.76405 1.18917 1.19095 1.20382 1.17475 0.84492 0.85369 0.84165 1.90579 1.55396 1.19236 1.86668 1.24675 1.15147 1.02886 0.97337 1.20772 0.99641 1.00759 0.90484 1.19932 1.03915 0.94356 1.00185 1.25316 1.05591 1.01061 1.03039 1.20280 0.96024 0.95933 0.96052 1.21550 0.93938 1.00408 0.99930 1.21749 1.01086 0.98946 0.98689 1.83674 1.55119 1.12430 0.96857 0.74443 0.87026 0.89345 0.91077 0.84698 0.82174 0.90002 0.88533 0.92048 0.92798 0.92160 0.91719 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -8.35 19.25 74.32 1.43 -6.92 16 2 C -0.16 -7.15 9.02 31.12 0.28 -6.87 16 3 C 0.22 10.19 4.73 84.57 0.40 10.59 16 4 N -0.44 -23.68 2.61 -650.19 -1.69 -25.37 16 5 C -0.36 -20.51 9.31 84.09 0.78 -19.72 16 6 H 0.08 4.89 7.40 -2.91 -0.02 4.87 16 7 C 0.01 0.38 4.88 84.94 0.41 0.80 16 8 N -0.86 -44.21 9.55 21.67 0.21 -44.00 16 9 Si 0.99 41.36 29.60 68.60 2.03 43.39 16 10 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 11 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 12 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 13 C 0.49 27.16 7.50 86.38 0.65 27.81 16 14 O -0.63 -39.26 16.51 -4.50 -0.07 -39.33 16 15 C -0.28 -12.36 6.22 24.07 0.15 -12.21 16 16 C -0.08 -3.16 10.02 21.74 0.22 -2.94 16 17 C -0.15 -4.57 9.99 21.08 0.21 -4.36 16 18 C -0.23 -6.40 5.53 24.69 0.14 -6.26 16 19 C -0.04 -0.85 5.64 29.85 0.17 -0.68 16 20 C -0.12 -2.18 5.92 30.59 0.18 -2.00 16 21 C -0.15 -1.99 9.91 71.98 0.71 -1.27 16 22 S 0.25 8.44 16.10 -56.49 -0.91 7.53 16 23 H 0.24 6.96 7.80 -4.43 -0.03 6.93 16 24 H 0.11 5.30 6.31 -2.38 -0.02 5.28 16 25 H 0.09 3.58 4.53 -21.10 -0.10 3.48 16 26 H 0.28 13.31 8.31 -92.71 -0.77 12.54 16 27 H 0.14 5.23 8.06 -2.91 -0.02 5.21 16 28 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 29 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 30 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -69.63 311.08 6.29 -63.34 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 1.00 Total: 18.49 kcal Atomic # 6 Polarization: -29.77 SS G_CDS: 5.73 Total: -24.04 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: -1.49 Total: -69.37 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -0.07 Total: -39.33 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Atomic # 16 Polarization: 8.44 SS G_CDS: -0.91 Total: 7.53 kcal Total: -69.63 6.29 -63.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868039987.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.433 kcal (2) G-P(sol) polarization free energy of solvation -69.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds