Wall clock time and date at job start Mon Mar 30 2020 01:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30641 * 1 3 3 Si 1.86805 * 119.99630 * 2 1 4 4 H 1.48499 * 109.46823 * 239.99439 * 3 2 1 5 5 H 1.48489 * 109.47357 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47109 * 120.00261 * 3 2 1 7 7 C 1.40309 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99656 * 194.64267 * 7 2 1 9 9 C 1.40531 * 120.00013 * 14.64558 * 7 2 1 10 10 C 1.44199 * 123.71370 * 15.87948 * 9 7 2 11 11 C 1.32764 * 114.42480 * 180.27005 * 10 9 7 12 12 S 1.75471 * 111.36872 * 359.75083 * 11 10 9 13 13 C 1.39543 * 123.71916 * 195.68564 * 9 7 2 14 14 C 1.46241 * 125.22317 * 0.02562 * 13 9 7 15 15 O 1.21756 * 120.00082 * 36.29214 * 14 13 9 16 16 N 1.34777 * 119.99961 * 216.28468 * 14 13 9 17 17 C 1.45660 * 119.48977 * 173.05403 * 16 14 13 18 18 C 1.51589 * 111.75120 * 218.77340 * 17 16 14 19 19 C 1.51348 * 113.20376 * 303.63874 * 18 17 16 20 20 C 1.50773 * 112.64630 * 47.84717 * 19 18 17 21 21 H 1.08996 * 114.17101 * 125.72114 * 20 19 18 22 22 C 1.53585 * 117.33322 * 268.73413 * 20 19 18 23 23 C 1.45909 * 119.49069 * 353.07737 * 16 14 13 24 24 H 1.08996 * 115.19698 * 23.73758 * 23 16 14 25 25 H 0.96995 * 120.00236 * 0.02562 * 1 2 3 26 26 H 1.07990 * 122.78215 * 0.02562 * 10 9 7 27 27 H 1.08003 * 124.31345 * 179.76182 * 11 10 9 28 28 H 1.08996 * 109.02886 * 339.36239 * 17 16 14 29 29 H 1.08999 * 109.02459 * 98.26747 * 17 16 14 30 30 H 1.09002 * 108.73414 * 64.59651 * 18 17 16 31 31 H 1.08997 * 108.73975 * 182.79455 * 18 17 16 32 32 H 1.09000 * 108.81666 * 168.99472 * 19 18 17 33 33 H 1.09000 * 108.80973 * 287.27168 * 19 18 17 34 34 H 1.08998 * 117.51178 * 3.43157 * 22 20 19 35 35 H 1.09000 * 117.51190 * 218.37075 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0942 1.6964 -1.2124 5 1 1.2754 2.7465 -0.0006 6 1 3.0941 1.6965 1.2125 7 6 2.0080 -1.2151 0.0005 8 1 3.0617 -1.2301 0.2370 9 6 1.3396 -2.4125 -0.3066 10 6 0.0479 -2.4670 -0.9452 11 6 -0.4150 -3.6954 -1.1437 12 16 0.7142 -4.9059 -0.5618 13 6 1.8546 -3.6798 -0.0308 14 6 3.1429 -3.9461 0.6079 15 8 3.5483 -3.2115 1.4902 16 7 3.8813 -5.0047 0.2201 17 6 5.2263 -5.1746 0.7528 18 6 6.1877 -5.6861 -0.3018 19 6 5.7397 -6.9845 -0.9375 20 6 4.2944 -6.9530 -1.3654 21 1 4.1332 -7.2097 -2.4124 22 6 3.2478 -7.4376 -0.3511 23 6 3.3212 -5.9628 -0.7273 24 1 2.5253 -5.5753 -1.3632 25 1 -0.4850 0.8400 -0.0004 26 1 -0.4993 -1.5820 -1.2343 27 1 -1.3653 -3.9208 -1.6047 28 1 5.5849 -4.2150 1.1249 29 1 5.1945 -5.8860 1.5780 30 1 6.2868 -4.9306 -1.0812 31 1 7.1628 -5.8423 0.1596 32 1 6.3655 -7.1843 -1.8073 33 1 5.8732 -7.7925 -0.2181 34 1 3.6013 -7.7226 0.6398 35 1 2.4050 -8.0133 -0.7334 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868262347.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:35 Heat of formation + Delta-G solvation = 10.354018 kcal Electronic energy + Delta-G solvation = -19420.858030 eV Core-core repulsion = 16510.608448 eV Total energy + Delta-G solvation = -2910.249581 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.72453 -37.37654 -35.90238 -33.20563 -33.04557 -32.45925 -29.04823 -27.07061 -25.51678 -23.03936 -22.38283 -21.49159 -20.13756 -18.94156 -18.15045 -17.10982 -16.02770 -15.50286 -15.29008 -15.04727 -14.36030 -14.18237 -13.71213 -13.67626 -13.23832 -12.58421 -12.44595 -12.42945 -11.88808 -11.58287 -11.45440 -11.27084 -11.04838 -10.93583 -10.79533 -10.62005 -10.42427 -10.30141 -10.13646 -9.77075 -9.44248 -9.14335 -8.61176 -7.75751 -7.47475 -7.05687 -7.04179 -4.50853 2.21645 2.96598 2.97955 3.01591 3.14834 3.49165 3.75274 3.76925 3.86943 4.03914 4.37006 4.94516 5.01550 5.11297 5.23165 5.30209 5.33444 5.61758 5.68997 5.91484 5.95281 6.03198 6.05193 6.12067 6.25189 6.29610 6.44599 6.45159 6.65923 6.81459 7.20189 7.21901 7.37542 7.50738 7.71906 8.25531 8.36672 8.56833 8.70758 9.44314 9.84772 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.021266 B = 0.006588 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.336330 B = 4249.120130 C = 5229.966794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.072 3.928 3 Si 0.923 3.077 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.384 4.384 8 H 0.095 0.905 9 C 0.141 3.859 10 C -0.102 4.102 11 C -0.224 4.224 12 S -0.021 6.021 13 C -0.443 4.443 14 C 0.615 3.385 15 O -0.554 6.554 16 N -0.595 5.595 17 C 0.120 3.880 18 C -0.129 4.129 19 C -0.083 4.083 20 C -0.170 4.170 21 H 0.104 0.896 22 C -0.192 4.192 23 C 0.093 3.907 24 H 0.152 0.848 25 H 0.289 0.711 26 H 0.150 0.850 27 H 0.135 0.865 28 H 0.086 0.914 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.860 -7.702 -4.234 10.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.150 4.150 3 Si 0.746 3.254 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.415 4.415 8 H 0.113 0.887 9 C 0.130 3.870 10 C -0.133 4.133 11 C -0.357 4.357 12 S 0.235 5.765 13 C -0.561 4.561 14 C 0.411 3.589 15 O -0.435 6.435 16 N -0.327 5.327 17 C -0.003 4.003 18 C -0.167 4.167 19 C -0.121 4.121 20 C -0.190 4.190 21 H 0.122 0.878 22 C -0.231 4.231 23 C -0.014 4.014 24 H 0.169 0.831 25 H 0.100 0.900 26 H 0.167 0.833 27 H 0.153 0.847 28 H 0.104 0.896 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.108 0.892 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.840 -8.659 -3.695 10.585 hybrid contribution 0.148 1.974 -0.058 1.980 sum 4.987 -6.685 -3.753 9.146 Atomic orbital electron populations 1.69648 1.08045 1.30388 1.31913 1.26288 0.94903 1.02420 0.91387 0.86099 0.80090 0.78564 0.80670 1.18394 1.19963 1.18249 1.19614 0.97946 0.89551 1.34359 0.88702 1.17829 0.89532 0.91322 0.88290 1.21837 0.96335 0.96775 0.98397 1.25216 1.03355 0.97490 1.09633 1.82916 1.13121 1.12054 1.68386 1.22402 1.03493 0.94641 1.35603 1.16979 0.83184 0.78002 0.80698 1.90677 1.73415 1.48654 1.30783 1.46867 1.14171 1.25558 1.46132 1.20680 0.82786 1.01767 0.95048 1.21125 0.98564 0.97844 0.99215 1.20233 0.94115 0.97483 1.00235 1.22185 0.92220 1.06381 0.98204 0.87784 1.23468 1.01239 0.98928 0.99428 1.22024 0.98825 0.85559 0.95013 0.83131 0.90002 0.83293 0.84678 0.89613 0.93728 0.91698 0.91148 0.91652 0.92230 0.89223 0.88311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.77 10.63 55.57 0.59 -18.18 16 2 C 0.07 1.76 5.36 -17.28 -0.09 1.66 16 3 Si 0.92 18.39 29.59 -169.99 -5.03 13.36 16 4 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.38 -10.37 8.56 -37.94 -0.32 -10.69 16 8 H 0.09 2.66 6.81 -52.48 -0.36 2.31 16 9 C 0.14 3.78 5.74 -106.21 -0.61 3.17 16 10 C -0.10 -2.48 9.11 -39.12 -0.36 -2.84 16 11 C -0.22 -4.87 11.07 28.86 0.32 -4.55 16 12 S -0.02 -0.45 19.26 -107.50 -2.07 -2.52 16 13 C -0.44 -11.33 5.83 -35.88 -0.21 -11.54 16 14 C 0.61 15.51 7.25 -13.05 -0.09 15.41 16 15 O -0.55 -15.57 15.01 5.14 0.08 -15.50 16 16 N -0.59 -12.22 3.14 -170.23 -0.53 -12.76 16 17 C 0.12 2.10 6.05 -5.21 -0.03 2.06 16 18 C -0.13 -1.76 5.87 -28.28 -0.17 -1.92 16 19 C -0.08 -1.02 5.80 -28.68 -0.17 -1.19 16 20 C -0.17 -2.38 6.11 -91.53 -0.56 -2.93 16 21 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 22 C -0.19 -2.80 10.03 -26.75 -0.27 -3.07 16 23 C 0.09 1.66 4.91 -68.67 -0.34 1.32 16 24 H 0.15 2.90 4.67 -29.03 -0.14 2.77 16 25 H 0.29 6.25 8.29 -40.82 -0.34 5.91 16 26 H 0.15 3.62 6.07 -52.49 -0.32 3.30 16 27 H 0.14 2.50 8.06 -52.48 -0.42 2.08 16 28 H 0.09 1.62 7.16 -51.93 -0.37 1.25 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.68 8.04 -51.93 -0.42 0.27 16 34 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 296.71 15.07 4.47 4.47 Total: -1.00 -29.07 296.71 -9.51 -38.58 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -4.12 Total: 7.63 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -2.90 Total: -15.10 kcal Atomic # 7 Polarization: -30.99 SS G_CDS: 0.06 Total: -30.93 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.08 Total: -15.50 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Atomic # 16 Polarization: -0.45 SS G_CDS: -2.07 Total: -2.52 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.07 -9.51 -38.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868262347.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.937 kcal (2) G-P(sol) polarization free energy of solvation -29.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds