Wall clock time and date at job start Mon Mar 30 2020 01:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30641 * 1 3 3 Si 1.86805 * 119.99630 * 2 1 4 4 H 1.48499 * 109.46823 * 239.99439 * 3 2 1 5 5 H 1.48489 * 109.47357 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47109 * 120.00261 * 3 2 1 7 7 C 1.40309 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99656 * 194.64267 * 7 2 1 9 9 C 1.40531 * 120.00013 * 14.64558 * 7 2 1 10 10 C 1.44199 * 123.71370 * 15.87948 * 9 7 2 11 11 C 1.32764 * 114.42480 * 180.27005 * 10 9 7 12 12 S 1.75471 * 111.36872 * 359.75083 * 11 10 9 13 13 C 1.39543 * 123.71916 * 195.68564 * 9 7 2 14 14 C 1.46241 * 125.22317 * 0.02562 * 13 9 7 15 15 O 1.21756 * 120.00082 * 36.29214 * 14 13 9 16 16 N 1.34777 * 119.99961 * 216.28468 * 14 13 9 17 17 C 1.45660 * 119.48977 * 173.05403 * 16 14 13 18 18 C 1.51589 * 111.75120 * 218.77340 * 17 16 14 19 19 C 1.51348 * 113.20376 * 303.63874 * 18 17 16 20 20 C 1.50773 * 112.64630 * 47.84717 * 19 18 17 21 21 H 1.08996 * 114.17101 * 125.72114 * 20 19 18 22 22 C 1.53585 * 117.33322 * 268.73413 * 20 19 18 23 23 C 1.45909 * 119.49069 * 353.07737 * 16 14 13 24 24 H 1.08996 * 115.19698 * 23.73758 * 23 16 14 25 25 H 0.96995 * 120.00236 * 0.02562 * 1 2 3 26 26 H 1.07990 * 122.78215 * 0.02562 * 10 9 7 27 27 H 1.08003 * 124.31345 * 179.76182 * 11 10 9 28 28 H 1.08996 * 109.02886 * 339.36239 * 17 16 14 29 29 H 1.08999 * 109.02459 * 98.26747 * 17 16 14 30 30 H 1.09002 * 108.73414 * 64.59651 * 18 17 16 31 31 H 1.08997 * 108.73975 * 182.79455 * 18 17 16 32 32 H 1.09000 * 108.81666 * 168.99472 * 19 18 17 33 33 H 1.09000 * 108.80973 * 287.27168 * 19 18 17 34 34 H 1.08998 * 117.51178 * 3.43157 * 22 20 19 35 35 H 1.09000 * 117.51190 * 218.37075 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0942 1.6964 -1.2124 5 1 1.2754 2.7465 -0.0006 6 1 3.0941 1.6965 1.2125 7 6 2.0080 -1.2151 0.0005 8 1 3.0617 -1.2301 0.2370 9 6 1.3396 -2.4125 -0.3066 10 6 0.0479 -2.4670 -0.9452 11 6 -0.4150 -3.6954 -1.1437 12 16 0.7142 -4.9059 -0.5618 13 6 1.8546 -3.6798 -0.0308 14 6 3.1429 -3.9461 0.6079 15 8 3.5483 -3.2115 1.4902 16 7 3.8813 -5.0047 0.2201 17 6 5.2263 -5.1746 0.7528 18 6 6.1877 -5.6861 -0.3018 19 6 5.7397 -6.9845 -0.9375 20 6 4.2944 -6.9530 -1.3654 21 1 4.1332 -7.2097 -2.4124 22 6 3.2478 -7.4376 -0.3511 23 6 3.3212 -5.9628 -0.7273 24 1 2.5253 -5.5753 -1.3632 25 1 -0.4850 0.8400 -0.0004 26 1 -0.4993 -1.5820 -1.2343 27 1 -1.3653 -3.9208 -1.6047 28 1 5.5849 -4.2150 1.1249 29 1 5.1945 -5.8860 1.5780 30 1 6.2868 -4.9306 -1.0812 31 1 7.1628 -5.8423 0.1596 32 1 6.3655 -7.1843 -1.8073 33 1 5.8732 -7.7925 -0.2181 34 1 3.6013 -7.7226 0.6398 35 1 2.4050 -8.0133 -0.7334 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868262347.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:35 Heat of formation + Delta-G solvation = -6.246945 kcal Electronic energy + Delta-G solvation = -19421.577901 eV Core-core repulsion = 16510.608448 eV Total energy + Delta-G solvation = -2910.969453 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.20772 -39.06848 -37.74670 -34.91499 -34.55085 -33.90247 -30.87601 -28.70809 -27.06148 -24.42938 -24.03761 -22.96149 -21.63407 -20.72072 -19.71441 -18.61882 -17.83787 -17.22750 -16.86920 -16.57180 -15.85364 -15.72804 -15.36138 -14.95720 -14.49186 -14.20875 -14.15750 -14.03552 -13.65146 -13.26084 -13.01109 -12.84874 -12.61595 -12.40971 -12.19725 -12.06301 -12.02765 -11.75705 -11.52353 -11.37870 -11.04572 -10.78937 -10.45085 -9.48517 -9.18266 -8.86646 -8.81998 -6.43756 0.36326 1.30681 1.34322 1.38395 1.43878 1.66295 1.99193 2.13961 2.20827 2.42634 2.90104 3.29078 3.78190 3.86402 3.93542 4.05559 4.09409 4.34284 4.44097 4.52415 4.63306 4.76998 4.87216 4.94597 4.95734 5.07336 5.10332 5.21572 5.27480 5.31252 5.38739 5.41587 5.57917 5.81670 5.90810 6.29791 6.55367 6.65546 6.82990 7.57881 8.05744 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.021266 B = 0.006588 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.336330 B = 4249.120130 C = 5229.966794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.039 3.961 3 Si 0.988 3.012 4 H -0.255 1.255 5 H -0.248 1.248 6 H -0.270 1.270 7 C -0.426 4.426 8 H 0.066 0.934 9 C 0.111 3.889 10 C -0.133 4.133 11 C -0.212 4.212 12 S 0.045 5.955 13 C -0.478 4.478 14 C 0.601 3.399 15 O -0.604 6.604 16 N -0.590 5.590 17 C 0.113 3.887 18 C -0.121 4.121 19 C -0.085 4.085 20 C -0.145 4.145 21 H 0.127 0.873 22 C -0.175 4.175 23 C 0.045 3.955 24 H 0.134 0.866 25 H 0.302 0.698 26 H 0.145 0.855 27 H 0.174 0.826 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.142 -9.713 -5.599 12.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.181 4.181 3 Si 0.807 3.193 4 H -0.179 1.179 5 H -0.171 1.171 6 H -0.195 1.195 7 C -0.457 4.457 8 H 0.084 0.916 9 C 0.100 3.900 10 C -0.165 4.165 11 C -0.345 4.345 12 S 0.302 5.698 13 C -0.596 4.596 14 C 0.397 3.603 15 O -0.489 6.489 16 N -0.320 5.320 17 C -0.009 4.009 18 C -0.159 4.159 19 C -0.122 4.122 20 C -0.164 4.164 21 H 0.145 0.855 22 C -0.214 4.214 23 C -0.062 4.062 24 H 0.151 0.849 25 H 0.113 0.887 26 H 0.163 0.837 27 H 0.191 0.809 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.119 0.881 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.117 -10.746 -5.095 12.946 hybrid contribution 0.060 2.422 0.383 2.453 sum 5.177 -8.323 -4.712 10.876 Atomic orbital electron populations 1.69629 1.08794 1.31956 1.31239 1.26990 0.95790 1.04761 0.90582 0.85170 0.79068 0.75017 0.80048 1.17925 1.17093 1.19508 1.19616 0.97106 0.91612 1.37333 0.91584 1.18290 0.90938 0.91918 0.88817 1.21715 0.96203 0.97872 1.00740 1.25736 1.04378 0.96867 1.07546 1.82475 1.10656 1.09608 1.67070 1.22875 1.04888 0.96273 1.35605 1.17224 0.83706 0.78910 0.80445 1.90620 1.74442 1.50747 1.33050 1.46799 1.14722 1.24756 1.45745 1.20896 0.82150 1.00928 0.96927 1.21106 0.98732 0.98275 0.97823 1.20336 0.93250 0.96825 1.01773 1.22391 0.92714 1.01983 0.99284 0.85490 1.23540 1.02272 0.95611 0.99964 1.22099 1.01220 0.86552 0.96298 0.84939 0.88682 0.83735 0.80858 0.92324 0.92732 0.92868 0.88066 0.88755 0.90506 0.89206 0.86434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.19 10.63 21.89 0.23 -38.95 16 2 C 0.04 1.97 5.36 85.37 0.46 2.43 16 3 Si 0.99 38.76 29.59 68.60 2.03 40.79 16 4 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 5 H -0.25 -8.56 7.11 99.48 0.71 -7.85 16 6 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.43 -24.53 8.56 23.33 0.20 -24.33 16 8 H 0.07 4.05 6.81 -2.91 -0.02 4.03 16 9 C 0.11 6.26 5.74 -20.89 -0.12 6.14 16 10 C -0.13 -6.65 9.11 22.61 0.21 -6.44 16 11 C -0.21 -9.02 11.07 66.64 0.74 -8.28 16 12 S 0.04 1.88 19.26 -56.49 -1.09 0.79 16 13 C -0.48 -25.42 5.83 24.67 0.14 -25.28 16 14 C 0.60 31.92 7.25 86.32 0.63 32.55 16 15 O -0.60 -36.43 15.01 -4.53 -0.07 -36.50 16 16 N -0.59 -24.68 3.14 -810.67 -2.54 -27.22 16 17 C 0.11 3.97 6.05 86.07 0.52 4.50 16 18 C -0.12 -3.04 5.87 29.59 0.17 -2.87 16 19 C -0.08 -1.72 5.80 29.33 0.17 -1.55 16 20 C -0.14 -3.51 6.11 -11.38 -0.07 -3.58 16 21 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 22 C -0.18 -4.58 10.03 30.59 0.31 -4.28 16 23 C 0.04 1.53 4.91 44.83 0.22 1.75 16 24 H 0.13 5.01 4.67 -16.95 -0.08 4.94 16 25 H 0.30 13.08 8.29 -92.71 -0.77 12.31 16 26 H 0.15 7.22 6.07 -2.92 -0.02 7.20 16 27 H 0.17 5.91 8.06 -2.91 -0.02 5.89 16 28 H 0.06 2.34 7.16 -2.39 -0.02 2.33 16 29 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.08 1.38 8.04 -2.39 -0.02 1.36 16 34 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -68.56 296.71 3.17 -65.38 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 1.04 Total: 24.96 kcal Atomic # 6 Polarization: -32.81 SS G_CDS: 3.57 Total: -29.24 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: -2.31 Total: -66.18 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -0.07 Total: -36.50 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.79 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -1.09 Total: 0.79 kcal Total: -68.56 3.17 -65.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868262347.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.135 kcal (2) G-P(sol) polarization free energy of solvation -68.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds