Wall clock time and date at job start Mon Mar 30 2020 01:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30641 * 1 3 3 Si 1.86793 * 120.00126 * 2 1 4 4 H 1.48502 * 109.47076 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46995 * 299.99567 * 3 2 1 6 6 H 1.48501 * 109.47232 * 59.99376 * 3 2 1 7 7 C 1.40309 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00006 * 170.14362 * 7 2 1 9 9 C 1.40544 * 119.99940 * 350.14742 * 7 2 1 10 10 C 1.44181 * 123.71750 * 336.50311 * 9 7 2 11 11 C 1.32757 * 114.43636 * 179.97438 * 10 9 7 12 12 S 1.75480 * 111.35657 * 359.75653 * 11 10 9 13 13 C 1.39539 * 123.71262 * 156.48585 * 9 7 2 14 14 C 1.46246 * 125.22840 * 359.97438 * 13 9 7 15 15 O 1.21760 * 120.00128 * 0.02562 * 14 13 9 16 16 N 1.34777 * 119.99779 * 179.97438 * 14 13 9 17 17 C 1.47065 * 136.06129 * 0.02562 * 16 14 13 18 18 C 1.53499 * 87.98616 * 152.90511 * 17 16 14 19 19 C 1.47065 * 136.05434 * 180.02562 * 16 14 13 20 20 H 1.09002 * 113.46766 * 92.31666 * 19 16 14 21 21 C 1.52998 * 113.47064 * 321.93199 * 19 16 14 22 22 C 1.53003 * 117.49912 * 148.24901 * 21 19 16 23 23 C 1.53002 * 117.49754 * 79.59366 * 21 19 16 24 24 H 0.97001 * 120.00045 * 0.02562 * 1 2 3 25 25 H 1.08004 * 122.77970 * 359.96339 * 10 9 7 26 26 H 1.08000 * 124.32514 * 179.97438 * 11 10 9 27 27 H 1.08998 * 113.46583 * 267.69016 * 17 16 14 28 28 H 1.08998 * 113.46605 * 38.12595 * 17 16 14 29 29 H 1.09003 * 114.20253 * 139.65298 * 18 17 16 30 30 H 1.09001 * 114.20369 * 272.47541 * 18 17 16 31 31 H 1.08993 * 115.55511 * 293.92039 * 21 19 16 32 32 H 1.09005 * 117.49646 * 0.02562 * 22 21 19 33 33 H 1.08996 * 117.49870 * 145.02222 * 22 21 19 34 34 H 1.09006 * 117.49940 * 214.98326 * 23 21 19 35 35 H 1.09001 * 117.49900 * 359.97175 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3462 0.0006 5 1 1.8817 2.3963 -1.2126 6 1 1.8816 2.3965 1.2124 7 6 2.0079 -1.2151 0.0005 8 1 3.0759 -1.2222 -0.1596 9 6 1.3206 -2.4232 0.2094 10 6 0.0547 -2.5159 0.8932 11 6 -0.4301 -3.7483 0.9865 12 16 0.6382 -4.9145 0.2262 13 6 1.7882 -3.6649 -0.2227 14 6 3.0400 -3.8904 -0.9444 15 8 3.7661 -2.9505 -1.2124 16 7 3.3903 -5.1388 -1.3121 17 6 2.8099 -6.4837 -1.1806 18 6 3.5675 -6.8764 -2.4566 19 6 4.5213 -5.7557 -2.0215 20 1 5.3165 -6.0956 -1.3580 21 6 5.0432 -4.9120 -3.1863 22 6 6.5366 -4.9987 -3.5079 23 6 5.9667 -3.7391 -2.8509 24 1 -0.4850 0.8400 -0.0004 25 1 -0.4567 -1.6542 1.2963 26 1 -1.3644 -4.0005 1.4659 27 1 3.1487 -7.0177 -0.2929 28 1 1.7263 -6.5019 -1.2962 29 1 4.0063 -7.8738 -2.4267 30 1 3.0260 -6.6689 -3.3795 31 1 4.3549 -4.7875 -4.0221 32 1 7.1471 -5.6572 -2.8899 33 1 6.8305 -4.9309 -4.5553 34 1 5.8860 -2.8430 -3.4663 35 1 6.2021 -3.5683 -1.8004 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868651984.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:42 Heat of formation + Delta-G solvation = 48.831080 kcal Electronic energy + Delta-G solvation = -19225.159319 eV Core-core repulsion = 16316.578228 eV Total energy + Delta-G solvation = -2908.581091 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.78830 -37.06695 -35.98717 -35.48998 -33.01861 -29.51790 -28.62340 -26.25529 -25.65236 -22.53335 -21.89816 -21.23329 -20.77088 -18.99605 -18.54535 -17.10958 -16.03221 -15.48347 -15.32716 -14.93602 -14.40298 -13.94441 -13.47848 -13.31516 -12.94837 -12.44239 -12.12704 -11.93524 -11.80508 -11.68738 -11.42078 -11.21457 -11.15840 -11.04870 -10.92847 -10.63987 -10.32645 -10.07605 -9.89216 -9.64470 -9.56011 -9.13482 -8.27083 -7.86328 -7.44650 -7.10180 -7.01386 -4.48650 2.19678 2.95915 3.00663 3.10920 3.18533 3.56832 3.68989 3.83527 3.88618 4.34354 4.44938 4.68908 5.00455 5.26373 5.28462 5.33184 5.42419 5.50624 5.65448 5.82985 5.85665 5.91501 6.03609 6.07817 6.20576 6.35361 6.40595 6.53271 6.64159 6.85194 7.02210 7.21832 7.27742 7.53253 7.78136 8.38573 8.56155 8.68508 8.90125 9.65373 9.89951 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.016493 B = 0.007209 C = 0.005141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.259200 B = 3883.117240 C = 5444.684586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.067 3.933 3 Si 0.923 3.077 4 H -0.253 1.253 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.379 4.379 8 H 0.111 0.889 9 C 0.140 3.860 10 C -0.100 4.100 11 C -0.216 4.216 12 S -0.041 6.041 13 C -0.423 4.423 14 C 0.629 3.371 15 O -0.550 6.550 16 N -0.651 5.651 17 C 0.100 3.900 18 C -0.149 4.149 19 C 0.166 3.834 20 H 0.078 0.922 21 C -0.151 4.151 22 C -0.188 4.188 23 C -0.140 4.140 24 H 0.287 0.713 25 H 0.144 0.856 26 H 0.135 0.865 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.147 -8.070 -2.506 9.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.154 4.154 3 Si 0.746 3.254 4 H -0.176 1.176 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.410 4.410 8 H 0.129 0.871 9 C 0.129 3.871 10 C -0.132 4.132 11 C -0.350 4.350 12 S 0.214 5.786 13 C -0.542 4.542 14 C 0.429 3.571 15 O -0.432 6.432 16 N -0.389 5.389 17 C -0.024 4.024 18 C -0.187 4.187 19 C 0.062 3.938 20 H 0.096 0.904 21 C -0.170 4.170 22 C -0.226 4.226 23 C -0.177 4.177 24 H 0.098 0.902 25 H 0.161 0.839 26 H 0.153 0.847 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.174 -8.697 -2.750 10.031 hybrid contribution -0.036 2.134 0.282 2.153 sum 4.138 -6.563 -2.468 8.141 Atomic orbital electron populations 1.69685 1.08068 1.30155 1.32564 1.26361 0.94913 1.02518 0.91589 0.85992 0.81440 0.79310 0.78650 1.17628 1.19553 1.19510 1.20042 0.97727 0.88764 1.34465 0.87104 1.17928 0.89524 0.91758 0.87890 1.21698 0.96399 0.96046 0.99059 1.25102 1.03655 0.97570 1.08651 1.82785 1.17814 1.13873 1.64098 1.22539 1.05067 0.95509 1.31042 1.16413 0.84526 0.79159 0.77028 1.90660 1.54248 1.40149 1.58137 1.49572 1.23577 1.05047 1.60739 1.22759 0.99796 0.83233 0.96641 1.23485 0.98394 0.98149 0.98670 1.21944 0.90690 0.90106 0.91030 0.90431 1.22332 0.92252 1.02554 0.99882 1.23011 0.95689 1.02784 1.01133 1.22685 1.01737 0.91639 1.01610 0.90238 0.83902 0.84725 0.90968 0.90234 0.90208 0.89117 0.88157 0.89290 0.89319 0.89283 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.21 10.81 55.57 0.60 -18.61 16 2 C 0.07 1.67 5.39 -17.28 -0.09 1.58 16 3 Si 0.92 18.85 29.57 -169.99 -5.03 13.82 16 4 H -0.25 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.38 -10.37 8.51 -37.93 -0.32 -10.70 16 8 H 0.11 3.18 6.04 -52.49 -0.32 2.87 16 9 C 0.14 3.81 5.68 -106.21 -0.60 3.21 16 10 C -0.10 -2.48 9.04 -39.13 -0.35 -2.84 16 11 C -0.22 -4.82 11.07 28.86 0.32 -4.50 16 12 S -0.04 -0.90 19.97 -107.50 -2.15 -3.05 16 13 C -0.42 -10.97 6.50 -35.88 -0.23 -11.20 16 14 C 0.63 15.81 7.92 -13.04 -0.10 15.70 16 15 O -0.55 -14.99 12.97 5.14 0.07 -14.93 16 16 N -0.65 -13.15 3.57 -179.18 -0.64 -13.79 16 17 C 0.10 1.60 7.22 -8.51 -0.06 1.54 16 18 C -0.15 -1.94 8.03 -26.23 -0.21 -2.15 16 19 C 0.17 2.66 4.13 -72.42 -0.30 2.36 16 20 H 0.08 1.16 8.12 -51.93 -0.42 0.74 16 21 C -0.15 -2.42 5.28 -90.62 -0.48 -2.90 16 22 C -0.19 -2.48 10.24 -26.69 -0.27 -2.75 16 23 C -0.14 -2.36 8.65 -26.69 -0.23 -2.59 16 24 H 0.29 6.30 8.29 -40.82 -0.34 5.96 16 25 H 0.14 3.53 6.40 -52.48 -0.34 3.20 16 26 H 0.13 2.55 8.06 -52.49 -0.42 2.13 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.08 1.33 6.34 -51.93 -0.33 1.00 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.09 1.19 8.11 -51.93 -0.42 0.76 16 31 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.10 1.79 7.90 -51.93 -0.41 1.38 16 LS Contribution 303.98 15.07 4.58 4.58 Total: -1.00 -29.53 303.98 -9.84 -39.37 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -4.33 Total: 7.83 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -2.94 Total: -15.22 kcal Atomic # 7 Polarization: -32.36 SS G_CDS: -0.04 Total: -32.40 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: 0.07 Total: -14.93 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.15 Total: -3.05 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.53 -9.84 -39.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868651984.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.197 kcal (2) G-P(sol) polarization free energy of solvation -29.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds