Wall clock time and date at job start Mon Mar 30 2020 01:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30641 * 1 3 3 Si 1.86793 * 120.00126 * 2 1 4 4 H 1.48502 * 109.47076 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46995 * 299.99567 * 3 2 1 6 6 H 1.48501 * 109.47232 * 59.99376 * 3 2 1 7 7 C 1.40309 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00006 * 170.14362 * 7 2 1 9 9 C 1.40544 * 119.99940 * 350.14742 * 7 2 1 10 10 C 1.44181 * 123.71750 * 336.50311 * 9 7 2 11 11 C 1.32757 * 114.43636 * 179.97438 * 10 9 7 12 12 S 1.75480 * 111.35657 * 359.75653 * 11 10 9 13 13 C 1.39539 * 123.71262 * 156.48585 * 9 7 2 14 14 C 1.46246 * 125.22840 * 359.97438 * 13 9 7 15 15 O 1.21760 * 120.00128 * 0.02562 * 14 13 9 16 16 N 1.34777 * 119.99779 * 179.97438 * 14 13 9 17 17 C 1.47065 * 136.06129 * 0.02562 * 16 14 13 18 18 C 1.53499 * 87.98616 * 152.90511 * 17 16 14 19 19 C 1.47065 * 136.05434 * 180.02562 * 16 14 13 20 20 H 1.09002 * 113.46766 * 92.31666 * 19 16 14 21 21 C 1.52998 * 113.47064 * 321.93199 * 19 16 14 22 22 C 1.53003 * 117.49912 * 148.24901 * 21 19 16 23 23 C 1.53002 * 117.49754 * 79.59366 * 21 19 16 24 24 H 0.97001 * 120.00045 * 0.02562 * 1 2 3 25 25 H 1.08004 * 122.77970 * 359.96339 * 10 9 7 26 26 H 1.08000 * 124.32514 * 179.97438 * 11 10 9 27 27 H 1.08998 * 113.46583 * 267.69016 * 17 16 14 28 28 H 1.08998 * 113.46605 * 38.12595 * 17 16 14 29 29 H 1.09003 * 114.20253 * 139.65298 * 18 17 16 30 30 H 1.09001 * 114.20369 * 272.47541 * 18 17 16 31 31 H 1.08993 * 115.55511 * 293.92039 * 21 19 16 32 32 H 1.09005 * 117.49646 * 0.02562 * 22 21 19 33 33 H 1.08996 * 117.49870 * 145.02222 * 22 21 19 34 34 H 1.09006 * 117.49940 * 214.98326 * 23 21 19 35 35 H 1.09001 * 117.49900 * 359.97175 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3462 0.0006 5 1 1.8817 2.3963 -1.2126 6 1 1.8816 2.3965 1.2124 7 6 2.0079 -1.2151 0.0005 8 1 3.0759 -1.2222 -0.1596 9 6 1.3206 -2.4232 0.2094 10 6 0.0547 -2.5159 0.8932 11 6 -0.4301 -3.7483 0.9865 12 16 0.6382 -4.9145 0.2262 13 6 1.7882 -3.6649 -0.2227 14 6 3.0400 -3.8904 -0.9444 15 8 3.7661 -2.9505 -1.2124 16 7 3.3903 -5.1388 -1.3121 17 6 2.8099 -6.4837 -1.1806 18 6 3.5675 -6.8764 -2.4566 19 6 4.5213 -5.7557 -2.0215 20 1 5.3165 -6.0956 -1.3580 21 6 5.0432 -4.9120 -3.1863 22 6 6.5366 -4.9987 -3.5079 23 6 5.9667 -3.7391 -2.8509 24 1 -0.4850 0.8400 -0.0004 25 1 -0.4567 -1.6542 1.2963 26 1 -1.3644 -4.0005 1.4659 27 1 3.1487 -7.0177 -0.2929 28 1 1.7263 -6.5019 -1.2962 29 1 4.0063 -7.8738 -2.4267 30 1 3.0260 -6.6689 -3.3795 31 1 4.3549 -4.7875 -4.0221 32 1 7.1471 -5.6572 -2.8899 33 1 6.8305 -4.9309 -4.5553 34 1 5.8860 -2.8430 -3.4663 35 1 6.2021 -3.5683 -1.8004 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868651984.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:41 Heat of formation + Delta-G solvation = 31.933429 kcal Electronic energy + Delta-G solvation = -19225.892056 eV Core-core repulsion = 16316.578228 eV Total energy + Delta-G solvation = -2909.313828 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.20722 -38.85853 -37.52046 -37.11456 -34.90162 -31.24126 -30.37010 -27.83854 -27.18173 -24.24353 -23.13123 -22.73815 -22.13386 -20.69473 -20.26478 -18.73850 -17.86817 -17.16935 -16.74659 -16.55772 -15.78220 -15.63974 -15.14155 -14.94112 -14.29840 -14.22360 -13.77060 -13.58733 -13.52062 -13.10215 -12.94466 -12.89041 -12.71558 -12.39645 -12.32894 -12.12907 -12.01406 -11.84486 -11.37277 -11.17536 -11.00769 -10.81256 -10.09666 -9.52649 -9.27253 -8.93161 -8.85691 -6.43686 0.32060 1.29413 1.31038 1.39596 1.46514 1.80788 1.97542 2.13738 2.15957 2.58695 3.07868 3.31795 3.48249 3.78915 4.01264 4.16192 4.18273 4.23667 4.35946 4.42446 4.62337 4.69595 4.79030 4.81673 4.97569 4.99244 5.05948 5.23878 5.25359 5.27187 5.32748 5.39847 5.50463 5.64469 5.91107 6.39129 6.60881 6.77567 7.16595 7.81454 8.08278 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.016493 B = 0.007209 C = 0.005141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.259200 B = 3883.117240 C = 5444.684586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.035 3.965 3 Si 0.988 3.012 4 H -0.271 1.271 5 H -0.259 1.259 6 H -0.247 1.247 7 C -0.421 4.421 8 H 0.081 0.919 9 C 0.110 3.890 10 C -0.130 4.130 11 C -0.206 4.206 12 S 0.025 5.975 13 C -0.461 4.461 14 C 0.614 3.386 15 O -0.589 6.589 16 N -0.665 5.665 17 C 0.092 3.908 18 C -0.118 4.118 19 C 0.156 3.844 20 H 0.093 0.907 21 C -0.166 4.166 22 C -0.139 4.139 23 C -0.172 4.172 24 H 0.299 0.701 25 H 0.138 0.862 26 H 0.173 0.827 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.127 0.873 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.073 0.927 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.177 -10.426 -2.996 11.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.184 4.184 3 Si 0.808 3.192 4 H -0.196 1.196 5 H -0.183 1.183 6 H -0.170 1.170 7 C -0.452 4.452 8 H 0.100 0.900 9 C 0.099 3.901 10 C -0.163 4.163 11 C -0.340 4.340 12 S 0.281 5.719 13 C -0.580 4.580 14 C 0.413 3.587 15 O -0.474 6.474 16 N -0.401 5.401 17 C -0.032 4.032 18 C -0.156 4.156 19 C 0.054 3.946 20 H 0.111 0.889 21 C -0.185 4.185 22 C -0.176 4.176 23 C -0.209 4.209 24 H 0.111 0.889 25 H 0.155 0.845 26 H 0.191 0.809 27 H 0.111 0.889 28 H 0.089 0.911 29 H 0.145 0.855 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.092 0.908 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.185 -11.129 -3.248 12.326 hybrid contribution -0.041 2.680 0.407 2.711 sum 4.144 -8.449 -2.841 9.830 Atomic orbital electron populations 1.69666 1.08770 1.31683 1.32198 1.27027 0.95779 1.04791 0.90796 0.85072 0.78837 0.75463 0.79874 1.19578 1.18346 1.17030 1.19979 0.96748 0.90738 1.37721 0.90050 1.18385 0.90890 0.92431 0.88430 1.21582 0.96499 0.97148 1.01044 1.25623 1.04573 0.96903 1.06875 1.82328 1.15533 1.11367 1.62668 1.23127 1.06637 0.97123 1.31085 1.16578 0.84363 0.80642 0.77151 1.90623 1.55224 1.42082 1.59468 1.49665 1.25651 1.04940 1.59837 1.23107 0.99704 0.80991 0.99360 1.23395 0.96148 0.99161 0.96847 1.22351 0.90768 0.90590 0.90927 0.88908 1.22392 0.94030 1.02193 0.99840 1.23096 0.93255 0.98948 1.02326 1.22525 1.05290 0.92873 1.00255 0.88935 0.84455 0.80927 0.88893 0.91057 0.85476 0.89083 0.89077 0.87004 0.86947 0.90791 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.30 10.81 21.89 0.24 -40.06 16 2 C 0.04 1.82 5.39 85.37 0.46 2.28 16 3 Si 0.99 40.01 29.57 68.60 2.03 42.04 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 6 H -0.25 -8.99 7.11 99.48 0.71 -8.29 16 7 C -0.42 -24.56 8.51 23.34 0.20 -24.36 16 8 H 0.08 5.10 6.04 -2.91 -0.02 5.09 16 9 C 0.11 6.26 5.68 -20.89 -0.12 6.14 16 10 C -0.13 -6.62 9.04 22.60 0.20 -6.41 16 11 C -0.21 -8.95 11.07 66.64 0.74 -8.21 16 12 S 0.02 1.05 19.97 -56.49 -1.13 -0.08 16 13 C -0.46 -24.65 6.50 24.67 0.16 -24.49 16 14 C 0.61 32.13 7.92 86.32 0.68 32.82 16 15 O -0.59 -34.38 12.97 -4.54 -0.06 -34.44 16 16 N -0.66 -26.68 3.57 -839.00 -2.99 -29.68 16 17 C 0.09 2.70 7.22 83.18 0.60 3.30 16 18 C -0.12 -2.63 8.03 30.92 0.25 -2.38 16 19 C 0.16 4.71 4.13 41.78 0.17 4.89 16 20 H 0.09 2.53 8.12 -2.39 -0.02 2.51 16 21 C -0.17 -5.17 5.28 -10.79 -0.06 -5.23 16 22 C -0.14 -3.31 10.24 30.62 0.31 -2.99 16 23 C -0.17 -6.01 8.65 30.62 0.26 -5.74 16 24 H 0.30 13.26 8.29 -92.71 -0.77 12.49 16 25 H 0.14 6.99 6.40 -2.91 -0.02 6.97 16 26 H 0.17 6.04 8.06 -2.91 -0.02 6.02 16 27 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.07 2.22 6.34 -2.39 -0.02 2.21 16 29 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.09 2.07 8.11 -2.39 -0.02 2.05 16 31 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 32 H 0.11 2.19 8.14 -2.38 -0.02 2.17 16 33 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 35 H 0.07 2.70 7.90 -2.39 -0.02 2.69 16 Total: -1.00 -70.01 303.98 3.06 -66.95 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: 1.10 Total: 25.66 kcal Atomic # 6 Polarization: -34.26 SS G_CDS: 3.87 Total: -30.39 kcal Atomic # 7 Polarization: -66.98 SS G_CDS: -2.76 Total: -69.74 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -0.06 Total: -34.44 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -1.13 Total: -0.08 kcal Total: -70.01 3.06 -66.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868651984.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.887 kcal (2) G-P(sol) polarization free energy of solvation -70.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds