Wall clock time and date at job start Mon Mar 30 2020 01:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38013 * 119.96536 * 2 1 4 4 C 1.38566 * 120.42883 * 180.02562 * 3 2 1 5 5 C 1.37825 * 120.35925 * 0.27690 * 4 3 2 6 6 C 1.39694 * 119.92807 * 359.42697 * 5 4 3 7 7 C 1.43204 * 120.21465 * 180.31869 * 6 5 4 8 8 N 4.81600 * 134.96714 * 179.97438 * 2 1 3 9 9 C 1.38921 * 119.96522 * 179.97438 * 2 1 3 10 10 S 1.76205 * 120.18339 * 359.97438 * 9 2 1 11 11 C 1.81398 * 103.00014 * 89.99645 * 10 9 2 12 12 C 1.52996 * 109.47172 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.47442 * 180.02562 * 12 11 10 14 14 C 1.42897 * 114.00590 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47531 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99902 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99909 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00145 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99807 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47193 * 59.99872 * 19 17 15 21 21 H 1.48502 * 109.47178 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47110 * 299.99516 * 19 17 15 23 23 H 1.08997 * 109.47124 * 90.00139 * 1 2 3 24 24 H 1.08998 * 109.47065 * 210.00411 * 1 2 3 25 25 H 1.08999 * 109.46637 * 330.00117 * 1 2 3 26 26 H 1.07997 * 119.78537 * 359.97438 * 3 2 1 27 27 H 1.08002 * 119.81494 * 179.97438 * 4 3 2 28 28 H 1.08001 * 120.03288 * 179.72454 * 5 4 3 29 29 H 1.08993 * 109.47459 * 300.00390 * 11 10 9 30 30 H 1.09001 * 109.47277 * 60.00496 * 11 10 9 31 31 H 1.09005 * 109.47390 * 300.00171 * 12 11 10 32 32 H 1.09005 * 109.47290 * 59.99922 * 12 11 10 33 33 H 1.09003 * 109.46867 * 299.99973 * 14 13 12 34 34 H 1.09007 * 109.47140 * 59.99327 * 14 13 12 35 35 H 0.97007 * 119.99837 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1964 1.1956 0.0000 4 6 3.5821 1.2068 -0.0005 5 6 4.2882 0.0233 -0.0068 6 6 3.6057 -1.1956 -0.0006 7 6 4.3334 -2.4290 -0.0002 8 7 4.9106 -3.4074 0.0015 9 6 2.2010 -1.2035 0.0005 10 16 1.3239 -2.7318 0.0019 11 6 1.1200 -3.0868 -1.7653 12 6 0.3627 -4.4051 -1.9365 13 8 0.2026 -4.6852 -3.3286 14 6 -0.4957 -5.9020 -3.6003 15 6 -0.6069 -6.0955 -5.0906 16 1 -0.1867 -5.3623 -5.7632 17 6 -1.2459 -7.2080 -5.5956 18 7 -1.7580 -8.1005 -4.7766 19 14 -1.3831 -7.4482 -7.4429 20 1 -0.0232 -7.5157 -8.0357 21 1 -2.1088 -8.7127 -7.7252 22 1 -2.1258 -6.3075 -8.0366 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3632 0.8900 0.5138 26 1 1.6524 2.1286 -0.0004 27 1 4.1114 2.1482 -0.0009 28 1 5.3681 0.0382 -0.0117 29 1 0.5565 -2.2808 -2.2352 30 1 2.1002 -3.1669 -2.2353 31 1 0.9259 -5.2114 -1.4665 32 1 -0.6176 -4.3248 -1.4666 33 1 0.0499 -6.7390 -3.1645 34 1 -1.4939 -5.8530 -3.1651 35 1 -2.2073 -8.8834 -5.1319 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871690904.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:07 Heat of formation + Delta-G solvation = -2.196962 kcal Electronic energy + Delta-G solvation = -17645.397678 eV Core-core repulsion = 14734.603845 eV Total energy + Delta-G solvation = -2910.793833 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.82937 -36.89988 -36.62566 -33.32720 -32.88008 -31.73762 -30.93719 -27.37357 -27.04537 -24.44671 -22.93421 -22.37441 -22.01015 -18.74300 -17.43865 -16.42713 -16.29955 -16.02094 -15.37051 -15.25291 -14.64029 -14.54870 -14.18595 -13.59778 -13.51468 -13.35929 -13.26127 -13.11904 -12.96136 -12.39940 -12.22320 -12.05445 -11.85699 -11.70496 -11.21689 -10.95062 -10.87998 -10.75776 -10.45294 -10.09818 -9.25302 -9.17794 -9.08408 -8.89986 -8.24640 -7.81832 -6.13479 -4.16056 0.21588 0.67462 1.44811 2.42466 2.55253 2.70301 3.30996 3.33719 3.37512 3.52304 3.60933 4.33053 4.33551 4.48323 4.74636 4.80912 4.85013 4.98977 5.10773 5.22826 5.26284 5.36403 5.44116 5.61262 5.68555 5.72733 5.82569 5.88300 6.03479 6.07289 6.12574 6.31422 7.04103 7.33730 7.37416 7.74973 8.09582 8.48050 8.95522 9.48670 10.97925 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.025868 B = 0.003262 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.163046 B = 8581.716017 C = 8893.890146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.034 4.034 3 C -0.103 4.103 4 C -0.093 4.093 5 C -0.089 4.089 6 C 0.023 3.977 7 C 0.248 3.752 8 N -0.392 5.392 9 C -0.080 4.080 10 S -0.135 6.135 11 C -0.091 4.091 12 C 0.080 3.920 13 O -0.393 6.393 14 C 0.197 3.803 15 C -0.518 4.518 16 H 0.066 0.934 17 C 0.057 3.943 18 N -0.897 5.897 19 Si 0.910 3.090 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.274 1.274 23 H 0.080 0.920 24 H 0.091 0.909 25 H 0.072 0.928 26 H 0.135 0.865 27 H 0.137 0.863 28 H 0.137 0.863 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.007 0.993 34 H 0.008 0.992 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.526 21.499 12.362 25.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.037 4.037 3 C -0.124 4.124 4 C -0.112 4.112 5 C -0.111 4.111 6 C 0.017 3.983 7 C -0.069 4.069 8 N -0.067 5.067 9 C -0.194 4.194 10 S 0.099 5.901 11 C -0.239 4.239 12 C 0.001 3.999 13 O -0.313 6.313 14 C 0.122 3.878 15 C -0.557 4.557 16 H 0.085 0.915 17 C -0.144 4.144 18 N -0.536 5.536 19 Si 0.737 3.263 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.200 1.200 23 H 0.098 0.902 24 H 0.109 0.891 25 H 0.091 0.909 26 H 0.153 0.847 27 H 0.155 0.845 28 H 0.155 0.845 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.025 0.975 34 H 0.026 0.974 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.002 19.233 13.081 24.598 hybrid contribution 0.066 0.750 -1.729 1.886 sum 8.067 19.983 11.352 24.358 Atomic orbital electron populations 1.21087 0.89465 1.04405 1.03685 1.20248 0.97172 0.91337 0.94968 1.21316 0.94316 0.97743 0.98996 1.21226 0.94189 0.98084 0.97657 1.21213 1.00472 0.90496 0.98892 1.16388 0.90801 0.87810 1.03289 1.25383 0.93598 0.92946 0.94936 1.81246 1.09107 1.09480 1.06823 1.21800 0.93661 0.97634 1.06267 1.85449 1.72383 1.21284 1.11021 1.23517 1.04963 1.02403 0.92997 1.21760 0.98034 0.93172 0.86885 1.87842 1.78891 1.45353 1.19230 1.20255 0.90493 0.80001 0.97021 1.21001 1.36765 1.07152 0.90749 0.91536 1.24952 0.95133 0.95349 0.98989 1.69956 1.37404 1.11391 1.34875 0.86366 0.78407 0.77448 0.84086 1.19978 1.21088 1.19953 0.90173 0.89051 0.90935 0.84672 0.84499 0.84488 0.88905 0.89441 0.93521 0.93279 0.97467 0.97407 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.00 9.57 36.01 0.34 -0.65 16 2 C -0.03 -0.30 5.89 -104.45 -0.62 -0.92 16 3 C -0.10 -0.66 9.68 -39.54 -0.38 -1.04 16 4 C -0.09 -0.54 10.02 -39.61 -0.40 -0.93 16 5 C -0.09 -0.66 9.75 -39.19 -0.38 -1.04 16 6 C 0.02 0.25 5.76 -106.58 -0.61 -0.37 16 7 C 0.25 3.27 14.28 -22.47 -0.32 2.95 16 8 N -0.39 -6.10 18.54 41.84 0.78 -5.32 16 9 C -0.08 -0.89 5.75 -38.49 -0.22 -1.11 16 10 S -0.13 -1.82 18.89 -107.50 -2.03 -3.85 16 11 C -0.09 -1.43 6.27 37.16 0.23 -1.19 16 12 C 0.08 1.54 5.95 37.16 0.22 1.77 16 13 O -0.39 -9.63 10.33 -35.23 -0.36 -10.00 16 14 C 0.20 5.48 5.69 36.01 0.20 5.68 16 15 C -0.52 -15.41 9.43 -34.44 -0.32 -15.74 16 16 H 0.07 1.95 7.81 -52.48 -0.41 1.54 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 19 Si 0.91 21.92 29.54 -169.99 -5.02 16.90 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.09 0.80 6.78 -51.93 -0.35 0.45 16 25 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 26 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 27 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 28 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 29 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 30 H 0.09 1.42 8.14 -51.92 -0.42 0.99 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 34 H 0.01 0.23 8.14 -51.92 -0.42 -0.19 16 35 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 327.56 15.07 4.94 4.94 Total: -1.00 -33.08 327.56 -7.86 -40.94 By element: Atomic # 1 Polarization: -1.75 SS G_CDS: -4.54 Total: -6.29 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -2.35 Total: -11.02 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 1.51 Total: -31.62 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -0.36 Total: -10.00 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: -1.82 SS G_CDS: -2.03 Total: -3.85 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.08 -7.86 -40.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871690904.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.748 kcal (2) G-P(sol) polarization free energy of solvation -33.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds