Wall clock time and date at job start Mon Mar 30 2020 01:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38013 * 119.96536 * 2 1 4 4 C 1.38566 * 120.42883 * 180.02562 * 3 2 1 5 5 C 1.37825 * 120.35925 * 0.27690 * 4 3 2 6 6 C 1.39694 * 119.92807 * 359.42697 * 5 4 3 7 7 C 1.43204 * 120.21465 * 180.31869 * 6 5 4 8 8 N 4.81600 * 134.96714 * 179.97438 * 2 1 3 9 9 C 1.38921 * 119.96522 * 179.97438 * 2 1 3 10 10 S 1.76205 * 120.18339 * 359.97438 * 9 2 1 11 11 C 1.81398 * 103.00014 * 89.99645 * 10 9 2 12 12 C 1.52996 * 109.47172 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.47442 * 180.02562 * 12 11 10 14 14 C 1.42897 * 114.00590 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47531 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99902 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99909 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00145 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99807 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47193 * 59.99872 * 19 17 15 21 21 H 1.48502 * 109.47178 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47110 * 299.99516 * 19 17 15 23 23 H 1.08997 * 109.47124 * 90.00139 * 1 2 3 24 24 H 1.08998 * 109.47065 * 210.00411 * 1 2 3 25 25 H 1.08999 * 109.46637 * 330.00117 * 1 2 3 26 26 H 1.07997 * 119.78537 * 359.97438 * 3 2 1 27 27 H 1.08002 * 119.81494 * 179.97438 * 4 3 2 28 28 H 1.08001 * 120.03288 * 179.72454 * 5 4 3 29 29 H 1.08993 * 109.47459 * 300.00390 * 11 10 9 30 30 H 1.09001 * 109.47277 * 60.00496 * 11 10 9 31 31 H 1.09005 * 109.47390 * 300.00171 * 12 11 10 32 32 H 1.09005 * 109.47290 * 59.99922 * 12 11 10 33 33 H 1.09003 * 109.46867 * 299.99973 * 14 13 12 34 34 H 1.09007 * 109.47140 * 59.99327 * 14 13 12 35 35 H 0.97007 * 119.99837 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1964 1.1956 0.0000 4 6 3.5821 1.2068 -0.0005 5 6 4.2882 0.0233 -0.0068 6 6 3.6057 -1.1956 -0.0006 7 6 4.3334 -2.4290 -0.0002 8 7 4.9106 -3.4074 0.0015 9 6 2.2010 -1.2035 0.0005 10 16 1.3239 -2.7318 0.0019 11 6 1.1200 -3.0868 -1.7653 12 6 0.3627 -4.4051 -1.9365 13 8 0.2026 -4.6852 -3.3286 14 6 -0.4957 -5.9020 -3.6003 15 6 -0.6069 -6.0955 -5.0906 16 1 -0.1867 -5.3623 -5.7632 17 6 -1.2459 -7.2080 -5.5956 18 7 -1.7580 -8.1005 -4.7766 19 14 -1.3831 -7.4482 -7.4429 20 1 -0.0232 -7.5157 -8.0357 21 1 -2.1088 -8.7127 -7.7252 22 1 -2.1258 -6.3075 -8.0366 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3632 0.8900 0.5138 26 1 1.6524 2.1286 -0.0004 27 1 4.1114 2.1482 -0.0009 28 1 5.3681 0.0382 -0.0117 29 1 0.5565 -2.2808 -2.2352 30 1 2.1002 -3.1669 -2.2353 31 1 0.9259 -5.2114 -1.4665 32 1 -0.6176 -4.3248 -1.4666 33 1 0.0499 -6.7390 -3.1645 34 1 -1.4939 -5.8530 -3.1651 35 1 -2.2073 -8.8834 -5.1319 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871690904.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:07 Heat of formation + Delta-G solvation = -21.478510 kcal Electronic energy + Delta-G solvation = -17646.233788 eV Core-core repulsion = 14734.603845 eV Total energy + Delta-G solvation = -2911.629943 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.48259 -38.82104 -37.64580 -35.07002 -33.95898 -32.62539 -32.33799 -29.21925 -27.97272 -25.21407 -24.69566 -24.07131 -22.87511 -19.52252 -18.73462 -18.18445 -17.69553 -17.25423 -16.80356 -16.54280 -16.03909 -15.52395 -15.24830 -15.05302 -14.85327 -14.41661 -14.29390 -14.09570 -14.04595 -13.87641 -13.16628 -13.05544 -12.93672 -12.88563 -12.64224 -12.58338 -12.49477 -12.33321 -12.09436 -11.44891 -11.37463 -10.95422 -10.38148 -9.95669 -9.76789 -8.89016 -8.36294 -6.50273 -0.56113 0.01791 0.51908 1.38160 1.40341 1.43676 1.52316 1.55026 1.87355 2.32329 2.75296 2.77593 2.97478 3.12137 3.71104 3.74752 3.95800 4.01204 4.17379 4.22919 4.30033 4.42318 4.54230 4.59737 4.67153 4.79727 4.85953 4.87537 5.07819 5.14043 5.29886 5.34374 5.44525 5.48790 5.78958 5.87581 6.35281 6.39744 6.70500 7.21401 8.75976 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.025868 B = 0.003262 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.163046 B = 8581.716017 C = 8893.890146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.040 4.040 3 C -0.091 4.091 4 C -0.077 4.077 5 C -0.081 4.081 6 C -0.004 4.004 7 C 0.267 3.733 8 N -0.450 5.450 9 C -0.100 4.100 10 S -0.149 6.149 11 C -0.083 4.083 12 C 0.076 3.924 13 O -0.405 6.405 14 C 0.209 3.791 15 C -0.555 4.555 16 H 0.065 0.935 17 C 0.007 3.993 18 N -0.930 5.930 19 Si 0.987 3.013 20 H -0.266 1.266 21 H -0.274 1.274 22 H -0.262 1.262 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.099 0.901 26 H 0.171 0.829 27 H 0.179 0.821 28 H 0.159 0.841 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.038 0.962 32 H 0.058 0.942 33 H -0.015 1.015 34 H -0.007 1.007 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.797 24.861 11.803 28.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.043 4.043 3 C -0.111 4.111 4 C -0.095 4.095 5 C -0.102 4.102 6 C -0.010 4.010 7 C -0.048 4.048 8 N -0.125 5.125 9 C -0.214 4.214 10 S 0.085 5.915 11 C -0.230 4.230 12 C -0.002 4.002 13 O -0.326 6.326 14 C 0.134 3.866 15 C -0.592 4.592 16 H 0.083 0.917 17 C -0.192 4.192 18 N -0.569 5.569 19 Si 0.809 3.191 20 H -0.191 1.191 21 H -0.199 1.199 22 H -0.186 1.186 23 H 0.096 0.904 24 H 0.092 0.908 25 H 0.118 0.882 26 H 0.188 0.812 27 H 0.197 0.803 28 H 0.176 0.824 29 H 0.121 0.879 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.002 0.998 34 H 0.011 0.989 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.276 22.605 12.545 27.145 hybrid contribution 0.014 -0.103 -1.410 1.414 sum 8.290 22.501 11.135 26.439 Atomic orbital electron populations 1.21109 0.89004 1.04925 1.03679 1.20461 0.97702 0.91308 0.94835 1.21771 0.94878 0.97917 0.96531 1.21735 0.94056 0.98882 0.94779 1.21562 1.01711 0.89687 0.97290 1.16564 0.90625 0.87864 1.05919 1.25938 0.92582 0.93029 0.93269 1.81244 1.10998 1.11011 1.09278 1.21752 0.93702 0.96673 1.09261 1.85443 1.73274 1.24353 1.08434 1.23286 1.03701 1.00464 0.95538 1.21969 0.99037 0.95045 0.84163 1.87787 1.78402 1.43706 1.22663 1.19901 0.89582 0.80615 0.96488 1.21355 1.38153 1.08126 0.91569 0.91724 1.26016 0.93925 0.94449 1.04810 1.70070 1.37468 1.11860 1.37481 0.85179 0.78905 0.78068 0.76931 1.19108 1.19854 1.18605 0.90396 0.90755 0.88248 0.81150 0.80338 0.82370 0.87857 0.90576 0.94322 0.92402 0.99758 0.98920 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 9.57 71.24 0.68 -1.07 16 2 C -0.04 -0.61 5.89 -19.75 -0.12 -0.72 16 3 C -0.09 -0.73 9.68 22.29 0.22 -0.52 16 4 C -0.08 -0.49 10.02 22.25 0.22 -0.27 16 5 C -0.08 -0.94 9.75 22.52 0.22 -0.72 16 6 C 0.00 -0.07 5.76 -21.13 -0.12 -0.19 16 7 C 0.27 7.24 14.28 88.33 1.26 8.50 16 8 N -0.45 -14.70 18.54 19.00 0.35 -14.35 16 9 C -0.10 -2.14 5.75 22.98 0.13 -2.01 16 10 S -0.15 -4.15 18.89 -56.49 -1.07 -5.22 16 11 C -0.08 -2.68 6.27 71.98 0.45 -2.23 16 12 C 0.08 3.07 5.95 71.98 0.43 3.50 16 13 O -0.41 -20.75 10.33 -148.98 -1.54 -22.29 16 14 C 0.21 12.20 5.69 71.24 0.41 12.61 16 15 C -0.55 -33.79 9.43 25.60 0.24 -33.55 16 16 H 0.06 3.86 7.81 -2.91 -0.02 3.84 16 17 C 0.01 0.40 5.46 84.65 0.46 0.86 16 18 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 19 Si 0.99 44.77 29.54 68.60 2.03 46.79 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 22 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 23 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.07 1.27 6.78 -2.39 -0.02 1.25 16 25 H 0.10 0.77 8.08 -2.39 -0.02 0.75 16 26 H 0.17 0.25 8.06 -2.91 -0.02 0.22 16 27 H 0.18 -0.23 8.06 -2.91 -0.02 -0.26 16 28 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 29 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 30 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 33 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 34 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 35 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 Total: -1.00 -75.07 327.56 5.63 -69.44 By element: Atomic # 1 Polarization: -3.11 SS G_CDS: 1.09 Total: -2.02 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: 4.48 Total: -15.81 kcal Atomic # 7 Polarization: -71.54 SS G_CDS: 0.64 Total: -70.90 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -1.54 Total: -22.29 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 16 Polarization: -4.15 SS G_CDS: -1.07 Total: -5.22 kcal Total: -75.07 5.63 -69.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871690904.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.964 kcal (2) G-P(sol) polarization free energy of solvation -75.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds