Wall clock time and date at job start Mon Mar 30 2020 01:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30636 * 1 3 3 Si 1.86805 * 120.00192 * 2 1 4 4 H 1.48497 * 109.46759 * 269.99840 * 3 2 1 5 5 H 1.48497 * 109.46893 * 29.99799 * 3 2 1 6 6 H 1.48494 * 109.47184 * 149.99791 * 3 2 1 7 7 C 1.40309 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99826 * 189.79619 * 7 2 1 9 9 C 1.40537 * 120.00064 * 9.79024 * 7 2 1 10 10 C 1.44188 * 123.71232 * 23.63557 * 9 7 2 11 11 C 1.32772 * 114.42872 * 180.26621 * 10 9 7 12 12 S 1.75474 * 111.36015 * 359.75061 * 11 10 9 13 13 C 1.39544 * 123.71646 * 203.43319 * 9 7 2 14 14 C 1.46240 * 125.22674 * 0.03123 * 13 9 7 15 15 O 1.21765 * 120.00066 * 359.71145 * 14 13 9 16 16 N 1.34779 * 119.99886 * 179.71354 * 14 13 9 17 17 C 1.46500 * 119.99849 * 179.97438 * 16 14 13 18 18 H 1.09001 * 115.58030 * 350.77237 * 17 16 14 19 19 C 1.53125 * 117.51060 * 136.53975 * 17 16 14 20 20 C 1.52459 * 59.85725 * 107.44986 * 19 17 16 21 21 C 1.53251 * 128.58932 * 117.60032 * 20 19 17 22 22 C 1.53888 * 86.88934 * 165.11218 * 21 20 19 23 23 C 1.53258 * 128.58756 * 242.40413 * 20 19 17 24 24 H 0.97000 * 119.99977 * 359.97438 * 1 2 3 25 25 H 1.07996 * 122.78948 * 0.02562 * 10 9 7 26 26 H 1.07996 * 124.32048 * 179.75722 * 11 10 9 27 27 H 0.96996 * 120.00097 * 0.02562 * 16 14 13 28 28 H 1.08997 * 117.51133 * 0.02562 * 19 17 16 29 29 H 1.09000 * 117.54807 * 214.88109 * 19 17 16 30 30 H 1.09003 * 113.64970 * 279.61080 * 21 20 19 31 31 H 1.08998 * 113.64542 * 50.61142 * 21 20 19 32 32 H 1.08999 * 113.58782 * 89.60597 * 22 21 20 33 33 H 1.08997 * 113.58756 * 220.42897 * 22 21 20 34 34 H 1.09004 * 113.64117 * 309.38632 * 23 20 19 35 35 H 1.09004 * 113.64998 * 80.38384 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4879 2.0463 -1.4001 5 1 1.4379 2.6527 0.7000 6 1 3.5379 1.4402 0.7000 7 6 2.0079 -1.2151 0.0005 8 1 3.0761 -1.2219 0.1597 9 6 1.3205 -2.4234 -0.2059 10 6 0.0553 -2.5174 -0.8910 11 6 -0.4322 -3.7494 -0.9772 12 16 0.6389 -4.9151 -0.2203 13 6 1.7893 -3.6648 0.2260 14 6 3.0425 -3.8895 0.9454 15 8 3.7713 -2.9497 1.2069 16 7 3.3909 -5.1368 1.3188 17 6 4.6467 -5.3619 2.0389 18 1 5.3158 -4.5035 2.0980 19 6 4.6146 -6.3175 3.2350 20 6 5.2818 -6.7439 1.9321 21 6 6.7505 -7.1042 1.6836 22 6 6.2876 -7.7151 0.3492 23 6 4.9048 -7.8995 0.9987 24 1 -0.4850 0.8400 0.0004 25 1 -0.4555 -1.6568 -1.2967 26 1 -1.3685 -4.0019 -1.4526 27 1 2.8106 -5.8854 1.1101 28 1 3.6593 -6.7786 3.4855 29 1 5.2626 -6.0881 4.0809 30 1 7.3996 -6.2365 1.5654 31 1 7.1457 -7.8376 2.3865 32 1 6.2895 -7.0064 -0.4789 33 1 6.7833 -8.6545 0.1043 34 1 4.7862 -8.8543 1.5110 35 1 4.0741 -7.6694 0.3315 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874775158.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:17 Heat of formation + Delta-G solvation = 25.796084 kcal Electronic energy + Delta-G solvation = -18684.402150 eV Core-core repulsion = 15774.822187 eV Total energy + Delta-G solvation = -2909.579963 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.60005 -37.85768 -35.99853 -34.14025 -33.07569 -31.34220 -28.93205 -26.23817 -25.62636 -22.93967 -22.52193 -21.44574 -19.94397 -18.83632 -18.42320 -17.31395 -15.99311 -15.60850 -15.21252 -15.08160 -14.88841 -13.93690 -13.72858 -13.59864 -12.81835 -12.47575 -12.39027 -12.06313 -11.91873 -11.75776 -11.51311 -11.44987 -11.38103 -11.13678 -10.99780 -10.44385 -10.30539 -10.17785 -10.14862 -9.65596 -9.51425 -9.27049 -8.47116 -8.02737 -7.50122 -7.15646 -7.06159 -4.54672 2.13720 2.95468 2.99045 3.07370 3.11416 3.62366 3.73363 3.84133 3.87445 3.98769 4.48601 4.67117 4.78026 4.88672 5.01113 5.14287 5.30288 5.48939 5.71318 5.75287 5.84575 5.90511 5.95516 6.00941 6.10115 6.21068 6.40199 6.42203 6.70689 6.82450 7.15050 7.18729 7.32326 7.46965 7.69245 8.34576 8.43384 8.58605 8.76592 9.56342 9.84787 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.020672 B = 0.005223 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.140033 B = 5359.339516 C = 6324.169371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.067 3.933 3 Si 0.925 3.075 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.254 1.254 7 C -0.376 4.376 8 H 0.112 0.888 9 C 0.141 3.859 10 C -0.099 4.099 11 C -0.205 4.205 12 S -0.053 6.053 13 C -0.430 4.430 14 C 0.603 3.397 15 O -0.563 6.563 16 N -0.719 5.719 17 C 0.134 3.866 18 H 0.133 0.867 19 C -0.186 4.186 20 C -0.178 4.178 21 C -0.097 4.097 22 C -0.135 4.135 23 C -0.101 4.101 24 H 0.288 0.712 25 H 0.146 0.854 26 H 0.138 0.862 27 H 0.391 0.609 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.928 -8.748 0.813 10.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.155 4.155 3 Si 0.748 3.252 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.177 1.177 7 C -0.406 4.406 8 H 0.130 0.870 9 C 0.130 3.870 10 C -0.131 4.131 11 C -0.339 4.339 12 S 0.202 5.798 13 C -0.549 4.549 14 C 0.401 3.599 15 O -0.446 6.446 16 N -0.369 5.369 17 C 0.027 3.973 18 H 0.151 0.849 19 C -0.225 4.225 20 C -0.180 4.180 21 C -0.135 4.135 22 C -0.172 4.172 23 C -0.138 4.138 24 H 0.099 0.901 25 H 0.163 0.837 26 H 0.155 0.845 27 H 0.225 0.775 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.153 -9.433 1.179 10.813 hybrid contribution -0.269 1.673 -0.179 1.704 sum 4.884 -7.761 0.999 9.224 Atomic orbital electron populations 1.69669 1.08104 1.30421 1.31923 1.26392 0.94945 1.02628 0.91509 0.86001 0.80844 0.78713 0.79644 1.18886 1.19937 1.17693 1.20067 0.97804 0.88775 1.33998 0.87010 1.17931 0.89526 0.91785 0.87778 1.21731 0.96347 0.96063 0.98972 1.24944 1.03317 0.96969 1.08621 1.82704 1.17962 1.14166 1.64990 1.22522 1.05007 0.95660 1.31729 1.16848 0.84607 0.80996 0.77439 1.90648 1.53807 1.41503 1.58617 1.45257 1.21433 1.09573 1.60602 1.21226 0.88843 0.92147 0.95101 0.84906 1.23376 1.02060 1.04852 0.92209 1.22834 0.96716 0.98244 1.00216 1.22410 0.93749 1.00275 0.97051 1.22704 0.96757 1.00704 0.97054 1.22373 0.97726 0.96589 0.97141 0.90055 0.83700 0.84460 0.77491 0.88818 0.88509 0.91450 0.90062 0.90035 0.91657 0.90119 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.73 10.82 55.57 0.60 -18.13 16 2 C 0.07 1.63 5.39 -17.28 -0.09 1.54 16 3 Si 0.92 18.48 29.57 -169.99 -5.03 13.45 16 4 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 5 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 6 H -0.25 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.38 -10.14 8.52 -37.94 -0.32 -10.46 16 8 H 0.11 3.17 6.03 -52.49 -0.32 2.85 16 9 C 0.14 3.77 5.67 -106.21 -0.60 3.17 16 10 C -0.10 -2.41 9.04 -39.12 -0.35 -2.76 16 11 C -0.20 -4.45 11.07 28.86 0.32 -4.14 16 12 S -0.05 -1.14 22.25 -107.50 -2.39 -3.53 16 13 C -0.43 -10.97 6.51 -35.88 -0.23 -11.20 16 14 C 0.60 14.98 7.76 -13.05 -0.10 14.88 16 15 O -0.56 -15.49 14.01 5.13 0.07 -15.42 16 16 N -0.72 -14.38 5.54 -55.45 -0.31 -14.69 16 17 C 0.13 2.31 6.43 -68.14 -0.44 1.87 16 18 H 0.13 2.48 7.40 -51.93 -0.38 2.10 16 19 C -0.19 -2.60 10.46 -26.94 -0.28 -2.88 16 20 C -0.18 -2.43 3.01 -154.80 -0.47 -2.90 16 21 C -0.10 -1.12 8.10 -26.14 -0.21 -1.33 16 22 C -0.13 -1.53 8.08 -25.81 -0.21 -1.74 16 23 C -0.10 -1.24 8.08 -26.14 -0.21 -1.45 16 24 H 0.29 6.21 8.29 -40.82 -0.34 5.88 16 25 H 0.15 3.49 6.41 -52.49 -0.34 3.15 16 26 H 0.14 2.52 8.06 -52.49 -0.42 2.10 16 27 H 0.39 7.27 7.61 -40.82 -0.31 6.96 16 28 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.91 7.84 -51.93 -0.41 0.50 16 LS Contribution 310.27 15.07 4.68 4.68 Total: -1.00 -28.43 310.27 -9.85 -38.28 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -4.27 Total: 12.77 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -3.21 Total: -17.40 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.29 Total: -32.83 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.07 Total: -15.42 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Atomic # 16 Polarization: -1.14 SS G_CDS: -2.39 Total: -3.53 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.43 -9.85 -38.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874775158.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.081 kcal (2) G-P(sol) polarization free energy of solvation -28.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds