Wall clock time and date at job start Mon Mar 30 2020 01:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30636 * 1 3 3 Si 1.86805 * 120.00192 * 2 1 4 4 H 1.48497 * 109.46759 * 269.99840 * 3 2 1 5 5 H 1.48497 * 109.46893 * 29.99799 * 3 2 1 6 6 H 1.48494 * 109.47184 * 149.99791 * 3 2 1 7 7 C 1.40309 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99826 * 189.79619 * 7 2 1 9 9 C 1.40537 * 120.00064 * 9.79024 * 7 2 1 10 10 C 1.44188 * 123.71232 * 23.63557 * 9 7 2 11 11 C 1.32772 * 114.42872 * 180.26621 * 10 9 7 12 12 S 1.75474 * 111.36015 * 359.75061 * 11 10 9 13 13 C 1.39544 * 123.71646 * 203.43319 * 9 7 2 14 14 C 1.46240 * 125.22674 * 0.03123 * 13 9 7 15 15 O 1.21765 * 120.00066 * 359.71145 * 14 13 9 16 16 N 1.34779 * 119.99886 * 179.71354 * 14 13 9 17 17 C 1.46500 * 119.99849 * 179.97438 * 16 14 13 18 18 H 1.09001 * 115.58030 * 350.77237 * 17 16 14 19 19 C 1.53125 * 117.51060 * 136.53975 * 17 16 14 20 20 C 1.52459 * 59.85725 * 107.44986 * 19 17 16 21 21 C 1.53251 * 128.58932 * 117.60032 * 20 19 17 22 22 C 1.53888 * 86.88934 * 165.11218 * 21 20 19 23 23 C 1.53258 * 128.58756 * 242.40413 * 20 19 17 24 24 H 0.97000 * 119.99977 * 359.97438 * 1 2 3 25 25 H 1.07996 * 122.78948 * 0.02562 * 10 9 7 26 26 H 1.07996 * 124.32048 * 179.75722 * 11 10 9 27 27 H 0.96996 * 120.00097 * 0.02562 * 16 14 13 28 28 H 1.08997 * 117.51133 * 0.02562 * 19 17 16 29 29 H 1.09000 * 117.54807 * 214.88109 * 19 17 16 30 30 H 1.09003 * 113.64970 * 279.61080 * 21 20 19 31 31 H 1.08998 * 113.64542 * 50.61142 * 21 20 19 32 32 H 1.08999 * 113.58782 * 89.60597 * 22 21 20 33 33 H 1.08997 * 113.58756 * 220.42897 * 22 21 20 34 34 H 1.09004 * 113.64117 * 309.38632 * 23 20 19 35 35 H 1.09004 * 113.64998 * 80.38384 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4879 2.0463 -1.4001 5 1 1.4379 2.6527 0.7000 6 1 3.5379 1.4402 0.7000 7 6 2.0079 -1.2151 0.0005 8 1 3.0761 -1.2219 0.1597 9 6 1.3205 -2.4234 -0.2059 10 6 0.0553 -2.5174 -0.8910 11 6 -0.4322 -3.7494 -0.9772 12 16 0.6389 -4.9151 -0.2203 13 6 1.7893 -3.6648 0.2260 14 6 3.0425 -3.8895 0.9454 15 8 3.7713 -2.9497 1.2069 16 7 3.3909 -5.1368 1.3188 17 6 4.6467 -5.3619 2.0389 18 1 5.3158 -4.5035 2.0980 19 6 4.6146 -6.3175 3.2350 20 6 5.2818 -6.7439 1.9321 21 6 6.7505 -7.1042 1.6836 22 6 6.2876 -7.7151 0.3492 23 6 4.9048 -7.8995 0.9987 24 1 -0.4850 0.8400 0.0004 25 1 -0.4555 -1.6568 -1.2967 26 1 -1.3685 -4.0019 -1.4526 27 1 2.8106 -5.8854 1.1101 28 1 3.6593 -6.7786 3.4855 29 1 5.2626 -6.0881 4.0809 30 1 7.3996 -6.2365 1.5654 31 1 7.1457 -7.8376 2.3865 32 1 6.2895 -7.0064 -0.4789 33 1 6.7833 -8.6545 0.1043 34 1 4.7862 -8.8543 1.5110 35 1 4.0741 -7.6694 0.3315 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874775158.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:16 Heat of formation + Delta-G solvation = 9.711656 kcal Electronic energy + Delta-G solvation = -18685.099623 eV Core-core repulsion = 15774.822187 eV Total energy + Delta-G solvation = -2910.277436 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.88761 -39.54857 -37.82195 -35.57244 -34.93392 -32.86979 -30.77891 -28.09664 -26.59223 -24.52388 -23.66541 -22.98027 -21.66886 -20.66817 -19.84876 -18.80505 -17.78913 -17.28462 -16.69646 -16.34521 -16.10631 -15.51894 -15.44643 -15.37848 -14.28918 -14.21422 -13.80772 -13.65526 -13.29244 -13.22302 -13.05229 -12.91185 -12.77243 -12.50190 -12.44939 -12.10750 -12.04563 -11.52056 -11.44083 -11.18099 -11.08822 -10.66595 -10.39847 -9.63905 -9.32497 -8.96513 -8.87771 -6.48135 0.28019 1.32599 1.33564 1.35025 1.47148 1.75680 1.94455 2.16639 2.37038 2.42497 2.93360 3.30891 3.55772 3.70273 3.83058 3.93388 4.05760 4.32827 4.47086 4.51144 4.80241 4.84422 4.85425 4.86142 4.97945 5.05627 5.06936 5.15848 5.26192 5.37000 5.38409 5.51062 5.55047 5.74732 5.83879 6.37647 6.54957 6.69441 6.93542 7.69985 8.05505 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.020672 B = 0.005223 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.140033 B = 5359.339516 C = 6324.169371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.036 3.964 3 Si 0.990 3.010 4 H -0.249 1.249 5 H -0.253 1.253 6 H -0.273 1.273 7 C -0.416 4.416 8 H 0.083 0.917 9 C 0.112 3.888 10 C -0.128 4.128 11 C -0.190 4.190 12 S 0.005 5.995 13 C -0.469 4.469 14 C 0.593 3.407 15 O -0.604 6.604 16 N -0.705 5.705 17 C 0.086 3.914 18 H 0.107 0.893 19 C -0.165 4.165 20 C -0.165 4.165 21 C -0.092 4.092 22 C -0.133 4.133 23 C -0.100 4.100 24 H 0.302 0.698 25 H 0.143 0.857 26 H 0.178 0.822 27 H 0.399 0.601 28 H 0.100 0.900 29 H 0.114 0.886 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.673 -10.584 0.975 11.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.173 1.173 5 H -0.177 1.177 6 H -0.198 1.198 7 C -0.446 4.446 8 H 0.101 0.899 9 C 0.101 3.899 10 C -0.161 4.161 11 C -0.324 4.324 12 S 0.261 5.739 13 C -0.588 4.588 14 C 0.390 3.610 15 O -0.490 6.490 16 N -0.354 5.354 17 C -0.020 4.020 18 H 0.125 0.875 19 C -0.204 4.204 20 C -0.166 4.166 21 C -0.129 4.129 22 C -0.170 4.170 23 C -0.138 4.138 24 H 0.113 0.887 25 H 0.160 0.840 26 H 0.196 0.804 27 H 0.234 0.766 28 H 0.118 0.882 29 H 0.132 0.868 30 H 0.080 0.920 31 H 0.128 0.872 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.125 0.875 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.884 -11.337 1.347 12.418 hybrid contribution -0.194 2.090 -0.204 2.109 sum 4.690 -9.247 1.143 10.431 Atomic orbital electron populations 1.69643 1.08783 1.32018 1.31124 1.27060 0.95815 1.04854 0.90702 0.85078 0.78692 0.75010 0.80271 1.17317 1.17678 1.19762 1.20041 0.96897 0.90765 1.36944 0.89878 1.18394 0.90934 0.92352 0.88211 1.21623 0.96332 0.97227 1.00871 1.25455 1.04147 0.96114 1.06663 1.82299 1.15892 1.11860 1.63856 1.22996 1.06384 0.97326 1.32054 1.17042 0.84457 0.81988 0.77477 1.90606 1.55020 1.43126 1.60278 1.44980 1.22393 1.08070 1.59924 1.21345 0.88195 0.93644 0.98840 0.87532 1.23422 1.02716 1.02062 0.92183 1.22951 0.98607 0.95575 0.99496 1.22518 0.92044 1.00721 0.97653 1.22690 0.96407 1.01520 0.96408 1.22500 0.97714 0.96906 0.96644 0.88681 0.83994 0.80450 0.76625 0.88208 0.86751 0.92008 0.87228 0.91827 0.88992 0.87460 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.61 10.82 21.89 0.24 -38.37 16 2 C 0.04 1.79 5.39 85.37 0.46 2.26 16 3 Si 0.99 38.72 29.57 68.60 2.03 40.75 16 4 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16 5 H -0.25 -8.95 7.11 99.48 0.71 -8.25 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 7 C -0.42 -23.72 8.52 23.33 0.20 -23.52 16 8 H 0.08 5.10 6.03 -2.91 -0.02 5.08 16 9 C 0.11 6.25 5.67 -20.89 -0.12 6.14 16 10 C -0.13 -6.30 9.04 22.61 0.20 -6.10 16 11 C -0.19 -7.98 11.07 66.64 0.74 -7.24 16 12 S 0.01 0.23 22.25 -56.49 -1.26 -1.03 16 13 C -0.47 -24.66 6.51 24.67 0.16 -24.50 16 14 C 0.59 30.93 7.76 86.32 0.67 31.60 16 15 O -0.60 -35.67 14.01 -4.55 -0.06 -35.74 16 16 N -0.70 -28.98 5.54 -447.53 -2.48 -31.46 16 17 C 0.09 3.03 6.43 44.86 0.29 3.32 16 18 H 0.11 4.28 7.40 -2.39 -0.02 4.26 16 19 C -0.17 -4.37 10.46 30.46 0.32 -4.05 16 20 C -0.16 -4.23 3.01 -52.37 -0.16 -4.39 16 21 C -0.09 -1.89 8.10 30.98 0.25 -1.64 16 22 C -0.13 -2.71 8.08 31.19 0.25 -2.46 16 23 C -0.10 -2.21 8.08 30.98 0.25 -1.96 16 24 H 0.30 12.89 8.29 -92.71 -0.77 12.12 16 25 H 0.14 6.94 6.41 -2.91 -0.02 6.92 16 26 H 0.18 5.91 8.06 -2.91 -0.02 5.89 16 27 H 0.40 14.82 7.61 -92.71 -0.71 14.12 16 28 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.05 1.35 7.84 -2.39 -0.02 1.33 16 Total: -1.00 -65.54 310.27 2.39 -63.15 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: 0.41 Total: 35.26 kcal Atomic # 6 Polarization: -36.08 SS G_CDS: 3.52 Total: -32.56 kcal Atomic # 7 Polarization: -67.58 SS G_CDS: -2.24 Total: -69.83 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -0.06 Total: -35.74 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Atomic # 16 Polarization: 0.23 SS G_CDS: -1.26 Total: -1.03 kcal Total: -65.54 2.39 -63.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874775158.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.861 kcal (2) G-P(sol) polarization free energy of solvation -65.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds